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6357 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Cosmoscartini (Hemiptera: Cercopoidea: Cercopidae) is a large and brightly colored Old World tropical tribe, currently containing over 310 phytophagous species (including some economically important pests of e...

    Authors: Tianjuan Su, Bo He, Kui Li and Aiping Liang
    Citation: BMC Genomics 2018 19:961
    Content type: Research article Published on:

  2. Duck hepatitis A virus type 3 (DHAV-3) is one of the most harmful pathogens in the duck industry. However, the molecular mechanism underlying DHAV-3 infection in ducklings remains poorly understood. To study t...

    Authors: Fengyao Wu, Fengying Lu, Xin Fan, Jin Chao, Chuanmin Liu, Qunxing Pan, Huawei Sun and Xiaofei Zhang
    Citation: BMC Genomics 2020 21:123
    Content type: Research article Published on:

  3. The ongoing COVID-19 outbreak has caused devastating mortality and posed a significant threat to public health worldwide. Despite the severity of this illness and 2.3 million worldwide deaths, the disease mech...

    Authors: Yue Li, Ashley Duche, Michael R. Sayer, Don Roosan, Farid G. Khalafalla, Rennolds S. Ostrom, Jennifer Totonchy and Moom R. Roosan
    Citation: BMC Genomics 2021 22:125
    Content type: Research article Published on:

  4. Non-targeted whole genome sequencing is a powerful tool to comprehensively identify constituents of microbial communities in a sample. There is no need to direct the analysis to any identification before seque...

    Authors: Klaudia Chrzastek, Chandana Tennakoon, Dagmara Bialy, Graham Freimanis, John Flannery and Holly Shelton
    Citation: BMC Genomics 2022 23:406
    Content type: Research Published on:

  5. The completion and reporting of baculovirus genomes is extremely important as it advances our understanding of gene function and evolution. Due to the large number of viral genomes now sequenced it is very imp...

    Authors: Zuo-Ming Nie, Zhi-Fang Zhang, Dan Wang, Ping-An He, Cai-Ying Jiang, Li Song, Fang Chen, Jie Xu, Ling Yang, Lin-Lin Yu, Jian Chen, Zheng-Bing Lv, Jing-Jing Lu, Xiang-Fu Wu and Yao-Zhou Zhang
    Citation: BMC Genomics 2007 8:248
    Content type: Research article Published on:

  6. ‘Honeycrisp’ is an apple cultivar that is susceptible to soft scald, a chilling injury expressed as necrotic patches on the peel. Improved understanding of metabolism associated with the disorder would improve...

    Authors: Rachel S. Leisso, Nigel E. Gapper, James P. Mattheis, Nathanael L. Sullivan, Christopher B. Watkins, James J. Giovannoni, Robert J. Schaffer, Jason W. Johnston, Ines Hanrahan, Maarten L. A. T. M. Hertog, Bart M. Nicolaï and David R. Rudell
    Citation: BMC Genomics 2016 17:798
    Content type: Research article Published on:

  7. Brain and immune system are linked in a bi-directional manner. To date, it remained largely unknown why immune components become suppressed, enhanced, or remain unaffected in relation to psychosocial stress. T...

    Authors: Michael Oster, Eduard Muráni, Siriluck Ponsuksili, Richard B D’Eath, Simon P Turner, Gary Evans, Ludger Thölking, Esra Kurt, Ronald Klont, Aline Foury, Pierre Mormède and Klaus Wimmers
    Citation: BMC Genomics 2014 15:967
    Content type: Research article Published on:

  8. Human endogenous retroviruses (HERVs) have received much attention for their implications in the etiology of many human diseases and their profound effect on evolution. Notably, recent studies have highlighted...

    Authors: Jérémie Becker, Philippe Pérot, Valérie Cheynet, Guy Oriol, Nathalie Mugnier, Marine Mommert, Olivier Tabone, Julien Textoris, Jean-Baptiste Veyrieras and François Mallet
    Citation: BMC Genomics 2017 18:286
    Content type: Methodology article Published on:

  9. At present, very little is known about how Burkholderia pseudomallei (B. pseudomallei) interacts with its host to elicit melioidosis symptoms. We established a murine acute-phase melioidosis model and used DNA mi...

    Authors: Chui-Yoke Chin, Denise M Monack and Sheila Nathan
    Citation: BMC Genomics 2010 11:672
    Content type: Research article Published on:

  10. The plant growth promoting rhizobacterium Paenibacillus riograndensis SBR5 is a promising candidate to serve as crop inoculant. Despite its potential in providing environmental and economic benefits, the species

    Authors: Luciana Fernandes Brito, Marta Irla, Jörn Kalinowski and Volker F. Wendisch
    Citation: BMC Genomics 2017 18:846
    Content type: Research article Published on:

  11. Plant breeding for resistance to agricultural pests is an essential element in the development of integrated crop management systems; however, the molecular and genetic mechanisms underlying resistance are poo...

    Authors: Xiongbing Tu, Zhongkuan Liu and Zehua Zhang
    Citation: BMC Genomics 2018 19:116
    Content type: Research article Published on:

  12. Drosophila albomicans is a unique model organism for studying both sex chromosome and B chromosome evolution. A pair of its autosomes comprising roughly 40% of the whole genome has fused to the ancient X and Y ch...

    Authors: Qi Zhou, Hong-mei Zhu, Quan-fei Huang, Li Zhao, Guo-jie Zhang, Scott W Roy, Beatriz Vicoso, Zhao-lin Xuan, Jue Ruan, Yue Zhang, Ruo-ping Zhao, Chen Ye, Xiu-qing Zhang, Jun Wang, Wen Wang and Doris Bachtrog
    Citation: BMC Genomics 2012 13:109
    Content type: Research article Published on:

  13. Although primarily known as the site of ribosome subunit production, the nucleolus is involved in numerous and diverse cellular processes. Recent large-scale proteomics projects have identified thousands of hu...

    Authors: Michelle S Scott, François-Michel Boisvert, Angus I Lamond and Geoffrey J Barton
    Citation: BMC Genomics 2011 12:74
    Content type: Research article Published on:

  14. Long-term space travel simulation experiments enabled to discover different aspects of human metabolism such as the complexity of NaCl salt balance. Detailed proteomics data were collected during the Mars105 i...

    Authors: Hans Binder, Henry Wirth, Arsen Arakelyan, Kathrin Lembcke, Evgeny S Tiys, Vladimir A Ivanisenko, Nikolay A Kolchanov, Alexey Kononikhin, Igor Popov, Evgeny N Nikolaev, Lyudmila Kh Pastushkova and Irina M Larina
    Citation: BMC Genomics 2014 15(Suppl 12):S2
    Content type: Research Published on:

    This article is part of a Supplement: Volume 15 Supplement 12

  15. Sheep have developed the ability to store fat in their tails, which is a unique way of reserving energy to survive a harsh environment. However, the mechanism underlying this adaptive trait remains largely uns...

    Authors: Zhangyuan Pan, Shengdi Li, Qiuyue Liu, Zhen Wang, Zhengkui Zhou, Ran Di, Xuejiao An, Benpeng Miao, Xiangyu Wang, Wenping Hu, Xiaofei Guo, Shenjin Lv, Fukuan Li, Guohui Ding, Mingxing Chu and Yixue Li
    Citation: BMC Genomics 2019 20:261
    Content type: Research article Published on:

  16. The genus Acidithiobacillus has been widely concerned due to its superior survival and oxidation ability in acid mine drainage (AMD). However, the contribution of insertion sequence (IS) to their biological evolu...

    Authors: Shanshan Huang, Huiying Li, Liyuan Ma, Rui Liu, Yiran Li, Hongmei Wang, Xiaolu Lu, Xinping Huang, Xinhong Wu and Xueduan Liu
    Citation: BMC Genomics 2023 24:282
    Content type: Research Published on:

  17. Fusarium head blight is a disease of global concern that reduces crop yields and renders grains unfit for consumption due to mycotoxin contamination. Fusarium poae is frequently associated with cereal crops showi...

    Authors: Thomas E. Witte, Linda J. Harris, Hai D. T. Nguyen, Anne Hermans, Anne Johnston, Amanda Sproule, Jeremy R. Dettman, Christopher N. Boddy and David P. Overy
    Citation: BMC Genomics 2021 22:591
    Content type: Research Published on:

  18. Members of the heat shock protein 90 (Hsp90) class of proteins are evolutionarily conserved molecular chaperones. They are involved in protein folding, assembly, stabilization, activation, and degradation in m...

    Authors: Jin Zhang, Jianbo Li, Bobin Liu, Li Zhang, Jun Chen and Mengzhu Lu
    Citation: BMC Genomics 2013 14:532
    Content type: Research article Published on:

  19. Subterranean rodents have evolved many features to adapt to their hypoxic environment. The brain is an organ that is particularly vulnerable to damage caused by exposure to hypoxic conditions. To investigate t...

    Authors: Qianqian Dong, Luye Shi, Yangwei Li, Mengwan Jiang, Hong Sun, Baishi Wang, Han Cheng, Yifeng Zhang, Tian Shao, Yuhua Shi and Zhenlong Wang
    Citation: BMC Genomics 2018 19:901
    Content type: Research article Published on:

  21. Aquaculture represents the most sustainable alternative of seafood supply to substitute for the declining marine fisheries, but severe production bottlenecks remain to be solved. The application of genomic tec...

    Authors: Serena Ferraresso, Nicola Vitulo, Alba N Mininni, Chiara Romualdi, Barbara Cardazzo, Enrico Negrisolo, Richard Reinhardt, Adelino VM Canario, Tomaso Patarnello and Luca Bargelloni
    Citation: BMC Genomics 2008 9:580
    Content type: Research article Published on:

  22. To study the role of microRNA (miRNA) in the regulation of Chinese hamster ovary (CHO) cell growth, qPCR, microarray and quantitative LC-MS/MS analysis were utilised for simultaneous expression profiling of mi...

    Authors: Colin Clarke, Michael Henry, Padraig Doolan, Shane Kelly, Sinead Aherne, Noelia Sanchez, Paul Kelly, Paula Kinsella, Laura Breen, Stephen F Madden, Lin Zhang, Mark Leonard, Martin Clynes, Paula Meleady and Niall Barron
    Citation: BMC Genomics 2012 13:656
    Content type: Research article Published on:

  23. We present a report of the 2012 International Conference on Intelligent Biology and Medicine (ICIBM 2012) and the editorial report of the supplement to BMC Genomics that includes 22 research papers selected from ...

    Authors: Zhongming Zhao, Yufei Huang, Bing Zhang, Yu Shyr and Hua Xu
    Citation: BMC Genomics 2012 13(Suppl 8):S1
    Content type: Introduction Published on:

    This article is part of a Supplement: Volume 13 Supplement 8

  24. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) is an environmental contaminant that elicits a broad spectrum of toxic effects in a species-specific manner. Current risk assessment practices routinely extrapolate resu...

    Authors: Edward Dere, Andrea W Lee, Lyle D Burgoon and Timothy R Zacharewski
    Citation: BMC Genomics 2011 12:193
    Content type: Research article Published on:

  25. A chicken egg contains several biotin-binding proteins (BBPs), whose complete DNA and amino acid sequences are not known. In order to identify and characterise these genes and proteins we studied chicken cDNAs...

    Authors: Einari A Niskanen, Vesa P Hytönen, Alessandro Grapputo, Henri R Nordlund, Markku S Kulomaa and Olli H Laitinen
    Citation: BMC Genomics 2005 6:41
    Content type: Research article Published on:

  26. Scant genomic information from non-avian reptile sex chromosomes is available, and for only a few lizards, several snakes and one turtle species, and it represents only a small fraction of the total sex chromo...

    Authors: Tariq Ezaz, Bhumika Azad, Denis O’Meally, Matthew J Young, Kazumi Matsubara, Melanie J Edwards, Xiuwen Zhang, Clare E Holleley, Janine E Deakin, Jennifer A Marshall Graves, Arthur Georges, Scott V Edwards and Stephen D Sarre
    Citation: BMC Genomics 2013 14:899
    Content type: Research article Published on:

  30. A body distribution with high intramuscular fat and low abdominal fat is the ideal goal for broiler breeding. Preadipocytes with different origins have differences in terms of metabolism and gene expression. T...

    Authors: Zheng Ma, Na Luo, Lu Liu, Huanxian Cui, Jing Li, Hai Xiang, Huimin Kang, Hua Li and Guiping Zhao
    Citation: BMC Genomics 2021 22:232
    Content type: Research article Published on:

  31. Superoxide dismutases (SODs) are a key antioxidant enzyme family, which have been implicated in protecting plants against the toxic effects of reactive oxygen species. Despite current studies have shown that t...

    Authors: Wei Wang, Xiaopei Zhang, Fenni Deng, Rui Yuan and Fafu Shen
    Citation: BMC Genomics 2017 18:376
    Content type: Research article Published on:

  32. Chromatin immunoprecipitation combined with massive parallel sequencing (ChIP-seq) is widely used to study protein-chromatin interactions or chromatin modifications at genome-wide level. Sequence reads that ac...

    Authors: Marco-Antonio Mendoza-Parra, Malgorzata Nowicka, Wouter Van Gool and Hinrich Gronemeyer
    Citation: BMC Genomics 2013 14:834
    Content type: Software Published on:

  33. Plant transcriptome profiling has provided a tool for understanding the mechanisms by which plants respond to stress conditions. Analysis of genome-wide transcriptome will provides a useful dataset of drought ...

    Authors: Pil Joong Chung, Harin Jung, Dong-Hoon Jeong, Sun-Hwa Ha, Yang Do Choi and Ju-Kon Kim
    Citation: BMC Genomics 2016 17:563
    Content type: Research article Published on:

  34. MicroRNAs (miRNAs) are short non-coding RNAs that are emerging as important post-transcriptional regulators of neuronal and synaptic development. The precise impact of miRNAs on presynaptic function and neurot...

    Authors: Vivian Y. Poon, Minxia Gu, Fang Ji, Antonius M. VanDongen and Marc Fivaz
    Citation: BMC Genomics 2016 17:777
    Content type: Research article Published on:

  35. Adherent and invasive Escherichia coli (AIEC) are commonly found in ileal lesions of Crohn's Disease (CD) patients, where they adhere to intestinal epithelial cells and invade into and survive in epithelial cells...

    Authors: John HE Nash, Andre Villegas, Andrew M Kropinski, Renan Aguilar-Valenzuela, Paulina Konczy, Mariola Mascarenhas, Kim Ziebell, Alfredo G Torres, Mohamed A Karmali and Brian K Coombes
    Citation: BMC Genomics 2010 11:667
    Content type: Research article Published on:

  36. Fusarium crown rot (FCR) is a chronic and severe disease in cereal production in semi-arid regions worldwide. A putative quantitative trait locus conferring FCR resistance, Qcrs.cpi-1H, had previously been mapped...

    Authors: Shang Gao, Zhi Zheng, Jonathan Powell, Ahsan Habib, Jiri Stiller, Meixue Zhou and Chunji Liu
    Citation: BMC Genomics 2019 20:650
    Content type: Research article Published on:

  37. MicroRNAs (miRNAs) are small non-coding RNAs that play critical roles in diverse biological processes via regulation of gene expression including in skeletal muscles. In the current study, miRNA expression pro...

    Authors: Xuan Liu, Nares Trakooljul, Frieder Hadlich, Eduard Muráni, Klaus Wimmers and Siriluck Ponsuksili
    Citation: BMC Genomics 2016 17:531
    Content type: Research article Published on:

  38. Plant and animal pathogenic fungus Cochliobolus lunatus cause great economic damages worldwide every year. C. lunatus displays an increased temperature dependent-virulence to a wide range of hosts. Nonetheless, t...

    Authors: Bengyella Louis, Sayanika Devi Waikhom, Pranab Roy, Pardeep Kumar Bhardwaj, Mohendro Wakambam Singh, Sailendra Goyari, Chandradev K Sharma and Narayan Chandra Talukdar
    Citation: BMC Genomics 2014 15:213
    Content type: Research article Published on:

    The Erratum to this article has been published in BMC Genomics 2015 16:347

  39. Phylogenetic and functional analysis was conducted on an Anopheles gambiae gene, ENSANGG00000017398. Based on phylogenetic analysis, this gene belongs to the same lineage as Heat shock protein cognate 70-4 (Hsc70...

    Authors: Cheolho Sim, Young S Hong, Konstantin A Tsetsarkin, Dana L Vanlandingham, Stephen Higgs and Frank H Collins
    Citation: BMC Genomics 2007 8:231
    Content type: Research article Published on:

  40. Xanthomonas oryzae pv. oryzae causes bacterial blight of rice (Oryza sativa L.), a major disease that constrains production of this staple crop in many parts of the world. We report here on the complete genome se...

    Authors: Steven L Salzberg, Daniel D Sommer, Michael C Schatz, Adam M Phillippy, Pablo D Rabinowicz, Seiji Tsuge, Ayako Furutani, Hirokazu Ochiai, Arthur L Delcher, David Kelley, Ramana Madupu, Daniela Puiu, Diana Radune, Martin Shumway, Cole Trapnell, Gudlur Aparna…
    Citation: BMC Genomics 2008 9:204
    Content type: Research article Published on:

  41. Next-generation sequencing now allows for total RNA extracts to be sequenced in non-model organisms such as bamboos, an economically and ecologically important group of grasses. Bamboos are divided into three ...

    Authors: William P. Wysocki, Eduardo Ruiz-Sanchez, Yanbin Yin and Melvin R. Duvall
    Citation: BMC Genomics 2016 17:384
    Content type: Research article Published on:

  42. Colletotrichum truncatum is a haploid, hemibiotrophic, ascomycete fungal pathogen that causes anthracnose disease on many economically important leguminous crops. This pathogen exploits sequential biotrophic- and...

    Authors: Vijai Bhadauria, Sabine Banniza, Albert Vandenberg, Gopalan Selvaraj and Yangdou Wei
    Citation: BMC Genomics 2011 12:327
    Content type: Research article Published on:

  43. The genus Silene is widely used as a model system for addressing ecological and evolutionary questions in plants, but advances in using the genus as a model system are impeded by the lack of available resources f...

    Authors: Nicolas Blavet, Delphine Charif, Christine Oger-Desfeux, Gabriel AB Marais and Alex Widmer
    Citation: BMC Genomics 2011 12:376
    Content type: Research article Published on:

  44. Listeria (L.) monocytogenes strains show a high diversity regarding stress tolerance and virulence potential. Genome studies have mainly focused on specific sequence types (STs) predominantly associated with eith...

    Authors: Eva Wagner, Andreas Zaiser, Rebekka Leitner, Narciso M. Quijada, Nadja Pracser, Ariane Pietzka, Werner Ruppitsch, Stephan Schmitz-Esser, Martin Wagner and Kathrin Rychli
    Citation: BMC Genomics 2020 21:847
    Content type: Research article Published on:

  45. MicroRNAs (miRNAs) play an important regulatory role in mammalian reproduction. Currently, most studies are primarily concentrated on ovarian miRNAs, ignoring the influence of endometrial miRNAs on the fecundi...

    Authors: Jihong Dong, Xuecheng Jiang, Nan Liu, Hegang Li, Jinshan Zhao, Jianning He and Xiaoxiao Gao
    Citation: BMC Genomics 2023 24:600
    Content type: Research Published on:

  46. Alternative splicing (AS) is a major source of variability in the transcriptome of eukaryotes. There is an increasing interest in its role in different pathologies. Before sequencing technology appeared, AS wa...

    Authors: Juan P. Romero, Ander Muniategui, Fernando J. De Miguel, Ander Aramburu, Luis Montuenga, Ruben Pio and Angel Rubio
    Citation: BMC Genomics 2016 17:467
    Content type: Methodology article Published on:

  47. Paeonia veitchii Lynch, a well-known herb from the Qinghai-Tibet Plateau south of the Himalayas, can synthesize specific monoterpene glycosides (PMGs) with multiple pharmacological activities, and its rhizome ha...

    Authors: Shaoshan Zhang, Jun-zhang Qu-Bie, Ming-kang Feng, A-xiang Qu-Bie, Yanfei Huang, Zhi-feng Zhang, Xin-jia Yan and Yuan Liu
    Citation: BMC Genomics 2023 24:45
    Content type: Research Published on:

  48. MicroRNAs (miRNAs) are small regulatory molecules which post-transcriptionally regulate mRNA stability and translation. Several microRNAs have received attention due to their role as key metabolic regulators. ...

    Authors: Jan A Mennigen, Christopher J Martyniuk, Iban Seiliez, Stéphane Panserat and Sandrine Skiba-Cassy
    Citation: BMC Genomics 2014 15:70
    Content type: Research article Published on:

  49. Biocides and antibiotics are used to eradicate or prevent the growth of microbial species on surfaces (occasionally on catheters), or infected sites, either in combination or sequentially, raising concerns abo...

    Authors: Tânia Curiao, Emmanuela Marchi, Denis Grandgirard, Ricardo León-Sampedro, Carlo Viti, Stephen L. Leib, Fernando Baquero, Marco R. Oggioni, José Luis Martinez and Teresa M. Coque
    Citation: BMC Genomics 2016 17:491
    Content type: Research article Published on:

  50. Reactive oxygen species (ROS) are involved in the regulation of diverse physiological processes in plants, including various biotic and abiotic stress responses. Thus, oxidative stress tolerance mechanisms in ...

    Authors: Vaibhav Srivastava, Ogonna Obudulu, Joakim Bygdell, Tommy Löfstedt, Patrik Rydén, Robert Nilsson, Maria Ahnlund, Annika Johansson, Pär Jonsson, Eva Freyhult, Johanna Qvarnström, Jan Karlsson, Michael Melzer, Thomas Moritz, Johan Trygg, Torgeir R Hvidsten…
    Citation: BMC Genomics 2013 14:893
    Content type: Research article Published on:

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