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6356 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. The development of skeletal muscle is closely related to the efficiency of meat production and meat quality. Chicken skeletal muscle development depends on myogenesis and adipogenesis and occurs in two phases—...

    Authors: Jinghui Li, Siyuan Xing, Guiping Zhao, Maiqing Zheng, Xinting Yang, Jiahong Sun, Jie Wen and Ranran Liu
    Citation: BMC Genomics 2020 21:752
    Content type: Research article Published on:

  2. Lysine acetylation in proteins is a ubiquitous and conserved post-translational modification, playing a critical regulatory role in almost every aspect of living cells. Although known for many years, its funct...

    Authors: Shanyue Zhou, Qianqian Yang, Changfa Yin, Lin Liu and Wenxing Liang
    Citation: BMC Genomics 2016 17:1019
    Content type: Research article Published on:

  3. Linkage of DNA markers with phenotypic traits provides essential information to dissect clustered genes with potential phenotypic contributions in a target genome region. Pinus flexilis E. James (limber pine) is ...

    Authors: Jun-Jun Liu, Anna W. Schoettle, Richard A. Sniezko, Rona N. Sturrock, Arezoo Zamany, Holly Williams, Amanda Ha, Danelle Chan, Bob Danchok, Douglas P. Savin and Angelia Kegley
    Citation: BMC Genomics 2016 17:753
    Content type: Research article Published on:

  4. Suppression Subtractive Hybridization PCR (SSH PCR) is a sophisticated cDNA subtraction method to enrich and isolate differentially expressed genes. Despite its popularity, the method has not been thoroughly s...

    Authors: Wan Ji, Matthew B Wright, Li Cai, Angel Flament and Klaus Lindpaintner
    Citation: BMC Genomics 2002 3:12
    Content type: Research article Published on:

  5. MicroRNAs (miRNAs) are small, non-coding 21–25 nt RNA molecules that play an important role in regulating gene expression. Little is known about the expression profiles and functions of miRNAs in skin and thei...

    Authors: Xue Tian, Junbing Jiang, Ruiwen Fan, Haidong Wang, Xiaolin Meng, Xiaoyan He, Junping He, Hongquan Li, Jianjun Geng, Xiuju Yu, Yunfei Song, Danli Zhang, Jianbo Yao, George W Smith and Changsheng Dong
    Citation: BMC Genomics 2012 13:555
    Content type: Research article Published on:

  6. During mitosis the cell depends on proper attachment and segregation of replicated chromosomes to generate two identical progeny. In cancers defined by overexpression or dysregulation of the MYC oncogene this pro...

    Authors: Sarah A. Streeter, Alexandria G. Williams, James R. Evans, Jing Wang, Alissa D. Guarnaccia, Andrea C. Florian, Rafet Al-Tobasei, Qi Liu, William P. Tansey and April M. Weissmiller
    Citation: BMC Genomics 2024 25:360
    Content type: Research Published on:

  7. Calcium-dependent protein kinases (CDPKs) have been shown to play important roles in various physiological processes, including plant growth and development, abiotic and biotic stress responses and plant hormo...

    Authors: Xiangpei Kong, Wei Lv, Shanshan Jiang, Dan Zhang, Guohua Cai, Jiaowen Pan and Dequan Li
    Citation: BMC Genomics 2013 14:433
    Content type: Research article Published on:

  8. Jatropha curcas L. is promoted as an important non-edible biodiesel crop worldwide. Jatropha oil, which is a triacylglycerol, can be directly blended with petro-diesel or transesterified with methanol and used as...

    Authors: Purushothaman Natarajan, Deepa Kanagasabapathy, Gnanasekaran Gunadayalan, Jasintha Panchalingam, Noopur shree, Priyanka Annabel Sugantham, Kavita Kumari Singh and Parani Madasamy
    Citation: BMC Genomics 2010 11:606
    Content type: Research article Published on:

  9. Our previous studies revealed that a new disease form of streptococcal toxic shock syndrome (STSS) is associated with specific Streptococcus suis serotype 2 (SS2) strains. To achieve a better understanding of the...

    Authors: Zuowei Wu, Ming Li, Changjun Wang, Jing Li, Na Lu, Ruifen Zhang, Yongqiang Jiang, Ruifu Yang, Cuihua Liu, Hui Liao, George F Gao, Jiaqi Tang and Baoli Zhu
    Citation: BMC Genomics 2011 12:219
    Content type: Research article Published on:

  10. Purpose of study is revealing significant differences in serum proteomes in schizophrenia and bipolar disorder (BD).

    Authors: Liudmila Smirnova, Alexander Seregin, Irina Boksha, Elena Dmitrieva, German Simutkin, Elena Kornetova, Olga Savushkina, Anastasia Letova, Nikolay Bokhan, Svetlana Ivanova and Victor Zgoda
    Citation: BMC Genomics 2019 20(Suppl 7):535
    Content type: Research Published on:

    This article is part of a Supplement: Volume 20 Supplement 7

  11. Cashmere goats are a heterogeneous hairy mammal. The fineness of cashmere can affect its economic value. Therefore, in this study, we used transcriptome sequencing techniques to analyze the gene expression pro...

    Authors: Cuiling Wu, Jianying Li, Xinming Xu, Qi Xu, Chongkai Qin, Guifen Liu, Chen Wei, Guoping Zhang, Kechuan Tian and Xuefeng Fu
    Citation: BMC Genomics 2022 23:527
    Content type: Research Published on:

  13. The plant bug, Pachypeltis micranthus Mu et Liu (Hemiptera: Miridae), is an effective potential biological control agent for Mikania micrantha H.B.K. (Asteraceae; one of the most notorious invasive weeds worldwid...

    Authors: Xiafei Wang, Ning Zhao, Liqiong Cai, Naiyong Liu, Jiaying Zhu and Bin Yang
    Citation: BMC Genomics 2023 24:339
    Content type: Research Published on:

  14. To explore the long non-coding RNA (lncRNA) expression pattern of congenital lung malformations on a genome-wide scale and investigate their potential biological function in four subtypes of congenital lung ma...

    Authors: Weili Yang, Pu Zhao, Yun Liu, Ping Cao, Xiang Ji, Ya Gao, Peng Li and Jiwen Cheng
    Citation: BMC Genomics 2021 22:861
    Content type: Research Published on:

  15. Asian corn borer (ACB), Ostrinia furnacalis (Guenée), is the major insect pest of maize in China and countries of East and Southeast Asia, the Pacific and Australasia. ACB can develop strong resistance to the tra...

    Authors: Li-Na Xu, Yue-Qin Wang, Zhen-Ying Wang, Ben-Jin Hu, Ying-Hui Ling and Kang-Lai He
    Citation: BMC Genomics 2015 16:173
    Content type: Research article Published on:

  16. Bread wheat (Triticum aestivum L.) is one of the most important cereal food crops for the global population. Spike-layer uniformity (the consistency of the spike distribution in the vertical space)-related traits...

    Authors: Parveen Malik, Jitendra Kumar, Shiveta Sharma, Rajiv Sharma and Shailendra Sharma
    Citation: BMC Genomics 2021 22:597
    Content type: Research article Published on:

  17. Cashmere growth is a seasonal and cyclic phenomenon under the control of photoperiod and multiple stimulatory and inhibitory signals. Beyond relevant coding genes, microRNA (miRNA) and long non coding RNA (lnc...

    Authors: Shanhe Wang, Wei Ge, Zhixin Luo, Yang Guo, Beilei Jiao, Lei Qu, Zhiying Zhang and Xin Wang
    Citation: BMC Genomics 2017 18:767
    Content type: Research article Published on:

  18. Myxobacteria harbor numerous biosynthetic gene clusters that can produce a diverse range of secondary metabolites. Minicystis rosea DSM 24000T is a soil-dwelling myxobacterium belonging to the suborderSorangiinea...

    Authors: Shilpee Pal, Gaurav Sharma and Srikrishna Subramanian
    Citation: BMC Genomics 2021 22:655
    Content type: Research Published on:

  19. Proximity ligation based techniques, like Hi-C, involve restriction digestion followed by ligation of formaldehyde cross-linked chromatin. Distinct chromatin states can impact the restriction digestion, and he...

    Authors: Keerthivasan Raanin Chandradoss, Prashanth Kumar Guthikonda, Srinivas Kethavath, Monika Dass, Harpreet Singh, Rakhee Nayak, Sreenivasulu Kurukuti and Kuljeet Singh Sandhu
    Citation: BMC Genomics 2020 21:175
    Content type: Research article Published on:

  20. Acute hepatopancreatic necrosis disease (AHPND) has emerged as a major debilitating disease that causes massive shrimp death resulting in substantial economic losses in shrimp aquaculture. Given that several d...

    Authors: Zhihong Zheng, Jude Juventus Aweya, Fan Wang, Defu Yao, Jingsheng Lun, Shengkang Li, Hongyu Ma and Yueling Zhang
    Citation: BMC Genomics 2018 19:335
    Content type: Research article Published on:

  21. Deciphering the hereditary mechanism of seed iron (Fe) and zinc (Zn) content in soybean is important and sustainable to address the “hidden hunger” that presently affects approximately 2 billion people worldwi...

    Authors: Huan Wang, Jia Jia, Zhandong Cai, Mingming Duan, Ze Jiang, Qiuju Xia, Qibin Ma, Tengxiang Lian and Hai Nian
    Citation: BMC Genomics 2022 23:146
    Content type: Research Published on:

  22. In food animal agriculture, there is a need to identify the mechanisms that can improve the efficiency of muscle growth and protein accretion. Callipyge sheep provide excellent machinery since the up-regulatio...

    Authors: Hui Yu, Jolena N. Waddell, Shihuan Kuang, Ross L. Tellam, Noelle E. Cockett and Christopher A. Bidwell
    Citation: BMC Genomics 2018 19:283
    Content type: Research article Published on:

  23. Apoptosis is regulated in an orderly fashion by a series of genes, and has a crucial role in important physiological processes such as growth development, immunological response and so on. Recently, substantia...

    Authors: Jin-Ye Zhang, Min-Hui Pan, Zhi-Ya Sun, Shu-Jing Huang, Zi-Shu Yu, Di Liu, Dan-Hong Zhao and Cheng Lu
    Citation: BMC Genomics 2010 11:611
    Content type: Research article Published on:

  24. Providing double-stranded RNA (dsRNA) to insects has been proven to silence target genes, and this approach has emerged as a potential method to control agricultural pests by engineering plants to express inse...

    Authors: Roberto de A. Camargo, Roberto H. Herai, Luana N. Santos, Flavia M M Bento, Joni E. Lima, Henrique Marques-Souza and Antonio Figueira
    Citation: BMC Genomics 2015 16:635
    Content type: Research article Published on:

  25. Reliable indicators for the onset of flowering are not available for most perennial monocarpic species, representing a drawback for crops such as bamboo, agave and banana. The ability to predict and control th...

    Authors: Emmanuel Avila de Dios, Luis Delaye and June Simpson
    Citation: BMC Genomics 2019 20:473
    Content type: Research article Published on:

  26. A major goal in the post-genomic era is to identify and characterise disease susceptibility genes and to apply this knowledge to disease prevention and treatment. Rodents and humans have remarkably similar gen...

    Authors: Diego G Silva, Christian Schönbach, Vladimir Brusic, Luis A Socha, Takeshi Nagashima and Nikolai Petrovsky
    Citation: BMC Genomics 2004 5:28
    Content type: Research article Published on:

  27. Genetic resistance of soybean [Glycine max (L.) Merr] against Aphis glycines provides effective management of this invasive pest, though the underlying molecular mechanisms are largely unknown. This study aimed t...

    Authors: Sungwoo Lee, Bryan J. Cassone, Asela Wijeratne, Tae-Hwan Jun, Andrew P. Michel and M.A. Rouf Mian
    Citation: BMC Genomics 2017 18:472
    Content type: Research article Published on:

  28. The mammalian inner ear contains sensory organs, the organ of Corti in the cochlea and cristae and maculae in the vestibule, with each comprised of patterned sensory epithelia that are responsible for hearing ...

    Authors: Anya Rudnicki, Ofer Isakov, Kathy Ushakov, Shaked Shivatzki, Inbal Weiss, Lilach M Friedman, Noam Shomron and Karen B Avraham
    Citation: BMC Genomics 2014 15:484
    Content type: Research article Published on:

  29. DNA methylation plays important biological roles in plants and animals. To examine the rice genomic methylation landscape and assess its functional significance, we generated single-base resolution DNA methylo...

    Authors: Xin Li, Jingde Zhu, Fengyi Hu, Song Ge, Mingzhi Ye, Hui Xiang, Guojie Zhang, Xiaoming Zheng, Hongyu Zhang, Shilai Zhang, Qiong Li, Ruibang Luo, Chang Yu, Jian Yu, Jingfeng Sun, Xiaoyu Zou…
    Citation: BMC Genomics 2012 13:300
    Content type: Research article Published on:

  30. Intramuscular fat content is an important index reflecting the quality of mutton, which directly affects the flavor and tenderness of mutton. Livestock and poultry intramuscular fat content is influenced by ge...

    Authors: Xuwen Shao, Xintan Lu, Xinming Sun, Huaizhi Jiang and Yang Chen
    Citation: BMC Genomics 2024 25:592
    Content type: Research Published on:

  31. Feed efficiency is one of the most important parameters that affect beef production costs. The energy metabolism of skeletal muscle greatly contributes to variations in feed efficiency. However, information re...

    Authors: Elisa B. Carvalho, Mateus P. Gionbelli, Rafael T. S. Rodrigues, Sarah F. M. Bonilha, Charles J. Newbold, Simone E. F. Guimarães, Walmir Silva, Lucas L. Verardo, Fabyano F. Silva, Edenio Detmann and Marcio S. Duarte
    Citation: BMC Genomics 2019 20:501
    Content type: Research article Published on:

  32. Biological networks describes the mechanisms which govern cellular functions. Temporal networks show how these networks evolve over time. Studying the temporal progression of network topologies is of utmost im...

    Authors: Rasha Elhesha, Aisharjya Sarkar, Christina Boucher and Tamer Kahveci
    Citation: BMC Genomics 2019 20(Suppl 6):434
    Content type: Research Published on:

    This article is part of a Supplement: Volume 20 Supplement 6

  33. The Amazonian rainforest is predicted to suffer from ongoing environmental changes. Despite the need to evaluate the impact of such changes on tree genetic diversity, we almost entirely lack genomic resources.

    Authors: Louise Brousseau, Alexandra Tinaut, Caroline Duret, Tiange Lang, Pauline Garnier-Gere and Ivan Scotti
    Citation: BMC Genomics 2014 15:238
    Content type: Research article Published on:

  34. The soybean cyst nematode (SCN), Heterodera glycines, is one of the most devastating diseases limiting soybean production worldwide. It is known that small RNAs, including microRNAs (miRNAs) and small interfering...

    Authors: Bin Tian, Shichen Wang, Timothy C. Todd, Charles D. Johnson, Guiliang Tang and Harold N. Trick
    Citation: BMC Genomics 2017 18:572
    Content type: Research article Published on:

  35. Shaziling pig is a well-known indigenous breed in China who has superior meat quality traits. However, the genetic mechanism and genomic evidence underlying meat quality characteristics of Shaziling pigs are s...

    Authors: Shuaihan He, Yubei Wang, Yabiao Luo, Mingming Xue, Maisheng Wu, Hong Tan, Yinglin Peng, Kejun Wang and Meiying Fang
    Citation: BMC Genomics 2024 25:30
    Content type: Research Published on:

  36. Potential functional variants (PFVs) can be defined as genetic variants responsible for a given phenotype. Ultimately, these are the best DNA markers for animal breeding and selection, especially for polygenic...

    Authors: Gabriela Ribeiro, Fernando Baldi, Aline S. M. Cesar, Pâmela A. Alexandre, Elisa Peripolli, José B. S. Ferraz and Heidge Fukumasu
    Citation: BMC Genomics 2022 23:774
    Content type: Research Published on:

  37. Transcriptome expression analysis in peanut to date has been limited to a relatively small set of genes and only recently has a significant number of ESTs been released into the public domain. Utilization of t...

    Authors: Paxton Payton, Kameswara Rao Kottapalli, Diane Rowland, Wilson Faircloth, Baozhu Guo, Mark Burow, Naveen Puppala and Maria Gallo
    Citation: BMC Genomics 2009 10:265
    Content type: Research article Published on:

  38. Clonostachys rosea strain IK726 is a mycoparasitic fungus capable of controlling mycotoxin-producing Fusarium species, including F. graminearum and F. culmorum, known to produce Zearalenone (ZEA) and Deoxynivalen...

    Authors: Chatchai Kosawang, Magnus Karlsson, Dan Funck Jensen, Adiphol Dilokpimol and David B Collinge
    Citation: BMC Genomics 2014 15:55
    Content type: Research article Published on:

  40. Copy number variations (CNVs) are structural variants consisting of large-scale insertions and deletions of genomic fragments. Exploring CNVs and estimating their effects on phenotypes are useful for genome se...

    Authors: Mei Liu, Lingzhao Fang, Shuli Liu, Michael G. Pan, Eyal Seroussi, John B. Cole, Li Ma, Hong Chen and George E. Liu
    Citation: BMC Genomics 2019 20:181
    Content type: Research article Published on:

  41. The Per-Arnt-Sim (PAS) domain represents a ubiquitous structural fold that is involved in bacterial sensing and adaptation systems, including several virulence related functions. Although PAS domains and the s...

    Authors: Neethu Shah, Rosmarie Gaupp, Hideaki Moriyama, Kent M Eskridge, Etsuko N Moriyama and Greg A Somerville
    Citation: BMC Genomics 2013 14:524
    Content type: Research article Published on:

  43. Bacillus Calmette–Guérin (BCG) refers to a group of vaccine strains with unique genetic characteristics. BCG is the only available vaccine for preventing tuberculosis (TB). Genetic and biochemical variations a...

    Authors: Mahla Asadian, Seyed Mehdi Hassanzadeh, Azadeh Safarchi and Masoumeh Douraghi
    Citation: BMC Genomics 2022 23:609
    Content type: Research Published on:

  44. Texture quality is impotent for melon (Cucumis melo L.) fruit. β-galactosidase (β-Gal, EC 3.2.1.23) is an important cell wall glycosyl hydrolase involved in fruit softening, However, the β-Gal gene (BGALs) family...

    Authors: Haobin Pan, Yinhan Sun, Miaomiao Qiao and Hongyan Qi
    Citation: BMC Genomics 2022 23:795
    Content type: Research Published on:

  45. Cultivated rice consists of two subspecies, Indica and Japonica, that exhibit well-characterized differences at the morphological and genetic levels. However, the differences between these subspecies at the trans...

    Authors: Malachy T. Campbell, Qian Du, Kan Liu, Sandeep Sharma, Chi Zhang and Harkamal Walia
    Citation: BMC Genomics 2020 21:394
    Content type: Research Article Published on:

  46. In flowering plants it has been shown that de novo genome assemblies of different species and genera show a significant drop in the proportion of alignable sequence. Within a plant species, however, it is assumed...

    Authors: Jan M de Boer, Erwin Datema, Xiaomin Tang, Theo J A Borm, Erin H Bakker, Herman J van Eck, Roeland C H J van Ham, Hans de Jong, Richard G F Visser and Christian W B Bachem
    Citation: BMC Genomics 2015 16:374
    Content type: Research article Published on:

  47. In the present study, we sequenced the complete genomes of three novel bacteriophages v_B-Bak1, v_B-Bak6, v_B-Bak10 previously isolated from historical anthrax burial sites in the South Caucasus country of Geo...

    Authors: J. Farlow, D. Bolkvadze, L. Leshkasheli, I. Kusradze, A. Kotorashvili, N. Kotaria, N. Balarjishvili, L. Kvachadze, M. Nikolich and M. Kutateladze
    Citation: BMC Genomics 2018 19:685
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2018 19:713

  48. Malnutrition is a major factor affecting animal health, resistance to disease and survival. In honey bees (Apis mellifera), pollen, which is the main dietary source of proteins, amino acids and lipids, is essenti...

    Authors: Cédric Alaux, Christelle Dantec, Hughes Parrinello and Yves Le Conte
    Citation: BMC Genomics 2011 12:496
    Content type: Research article Published on:

  49. The Mycoplasma mycoides cluster consists of five species or subspecies that are ruminant pathogens. One subspecies, Mycoplasma mycoides subspecies mycoides Small Colony (MmmSC), is the causative agent of contagio...

    Authors: Francois Thiaucourt, Lucia Manso-Silvan, Woubit Salah, Valérie Barbe, Benoit Vacherie, Daniel Jacob, Marc Breton, Virginie Dupuy, Anne Marie Lomenech, Alain Blanchard and Pascal Sirand-Pugnet
    Citation: BMC Genomics 2011 12:114
    Content type: Research article Published on:

  50. Porcine Circovirus Type 2 (PCV2) is a pathogen that has the ability to cause often devastating disease manifestations in pig populations with major economic implications. How PCV2 establishes subclinical persi...

    Authors: Nicolaas Van Renne, Ruifang Wei, Nathalie Pochet and Hans J. Nauwynck
    Citation: BMC Genomics 2018 19:831
    Content type: Research article Published on:

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