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  1. Ampelopsideae J. Wen & Z.L. Nie is a small-sized tribe of Vitaceae Juss., including ca. 47 species from four genera showing a disjunct distribution worldwide across all the continents except Antarctica. There ...

    Authors: Lei Zhang, Ying Meng, Da Wang, Guan-Hao He, Jun-Ming Zhang, Jun Wen and Ze-Long Nie
    Citation: BMC Genomics 2024 25:247
  2. We investigated whole blood and hepatic mRNA expressions of immune genes and rumen microbiome of crossbred beef steers with divergent residual feed intake phenotype to identify relevant biological processes un...

    Authors: Godstime Taiwo, Olanrewaju B. Morenikeji, Modoluwamu Idowu, Taylor Sidney, Ajiboye Adekunle, Andres Pech Cervantes, Sunday Peters and Ibukun M. Ogunade
    Citation: BMC Genomics 2024 25:245
  3. Vitamin A and retinoic acid (RA, a metabolite of vitamin A), are inextricably involved to the development of skeletal muscle in animals. However, the mechanisms regulating skeletal muscle development by vitami...

    Authors: Pengkang Song, Jiamin Zhao, Weipeng Zhang, Xuying Li, Bingzhen Ji and Junxing Zhao
    Citation: BMC Genomics 2024 25:244
  4. Mosaic loss of chromosome Y (LOY) in leukocytes is the most prevalent somatic aneuploidy in aging humans. Men with LOY have increased risks of all-cause mortality and the major causes of death, including many ...

    Authors: Jonas Mattisson, Jonatan Halvardson, Hanna Davies, Bożena Bruhn-Olszewska, Paweł Olszewski, Marcus Danielsson, Josefin Bjurling, Amanda Lindberg, Ammar Zaghlool, Edyta Rychlicka-Buniowska, Jan P. Dumanski and Lars A. Forsberg
    Citation: BMC Genomics 2024 25:243
  5. Authors: Daniel Gaspar, Catarina Ginja, Nuno Carolino, Célia Leão, Helena Monteiro, Lino Tábuas, Sandra Branco, Ludovina Padre, Pedro Caetano, Ricardo Romão, Claudino Matos, António Marcos Ramos, Elisa Bettencourt and Ana Usié
    Citation: BMC Genomics 2024 25:241

    The original article was published in BMC Genomics 2024 25:100

  6. Lumpy skin disease (LSD) is a transboundary viral disease of cattle and water buffaloes caused by the LSD virus, leading to high morbidity, low mortality, and a significant economic impact. Initially endemic t...

    Authors: Indrawati Sendow, Irene Kasindi Meki, Ni Luh Putu Indi Dharmayanti, Heri Hoerudin, Atik Ratnawati, Tirumala Bharani K. Settypalli, Hatem Ouled Ahmed, Harimurti Nuradji, Muharam Saepulloh, Rahmat Setya Adji, Nuha Fairusya, Faralinda Sari, Katamtama Anindita, Giovanni Cattoli and Charles Euloge Lamien
    Citation: BMC Genomics 2024 25:240
  7. Acute diarrhea, dehydration and death in piglets are all symptoms of transmissible gastroenteritis virus (TGEV), which results in significant financial losses in the pig industry. It is important to understand...

    Authors: Yajing Zhou, Chao Xu, Shanshen Gu, Yeyi Xiao, Shenglong Wu, Haifei Wang and Wenbin Bao
    Citation: BMC Genomics 2024 25:239
  8. The caffeoyl-CoA-O methyltransferase (CCoAOMT) family plays a crucial role in the oxidative methylation of phenolic substances and is involved in various plant processes, including growth, development, and stress...

    Authors: Yiqing Wang, Tao Wang, Siyu Qi, Jiamin Zhao, Jiumei Kong, Zhihui Xue, Weijiang Sun and Wen Zeng
    Citation: BMC Genomics 2024 25:238
  9. Here, we investigated the underlying transcriptional-level evidence behind phytochemical differences between two metabolically extreme genotypes of Thymus daenensis. The genotypes ‘Zagheh-11’ (thymol/carvacrol ty...

    Authors: Hosein Ahmadi, Reza Fatahi, Zabihollah Zamani, Majid Shokrpour, Morteza Sheikh-Assadi and Peter Poczai
    Citation: BMC Genomics 2024 25:237
  10. The pathogenesis of vitiligo remains unclear. The genes encoding vitiligo-related RNA-binding proteins (RBPs) and their underlying pathogenic mechanism have not been determined.

    Authors: Jingzhan Zhang, Fang Xiang, Yuan Ding, Wen Hu, Hongjuan Wang, Xiangyue Zhang, Zixian Lei, Tingting Li, Peng Wang and Xiaojing Kang
    Citation: BMC Genomics 2024 25:236
  11. Orchardgrass (Dactylis glomerata L.), a perennial forage, has the advantages of rich leaves, high yield, and good quality and is one of the most significant forage for grassland animal husbandry and ecological ma...

    Authors: Guangyan Feng, Yongjuan Jiao, Huizhen Ma, Haoyang Bian, Gang Nie, Linkai Huang, Zheni Xie, Qifan Ran, Wenwen Fan, Wei He and Xinquan Zhang
    Citation: BMC Genomics 2024 25:235
  12. Provision of feed is a major determinant of overall profitability in beef production systems, accounting for up to 75% of the variable costs. Thus, improving cattle feed efficiency, by way of determining the u...

    Authors: Kate Keogh, D. A. Kenny, P. A. Alexandre, M. McGee and A. Reverter
    Citation: BMC Genomics 2024 25:234
  13. Patagonian toothfish (Dissostichus eleginoides) is an economically and ecologically important fish species in the family Nototheniidae. Juveniles occupy progressively deeper waters as they mature and grow, and ad...

    Authors: David Ryder, David Stone, Diana Minardi, Ainsley Riley, Justin Avant, Lisa Cross, Marta Soeffker, Deborah Davidson, Andrew Newman, Peter Thomson, Chris Darby and Ronny van Aerle
    Citation: BMC Genomics 2024 25:233
  14. The rose is one of the most important ornamental flowers in the world for its aesthetic beauty but can be attacked by many pests such as aphids. Aphid infestation causes tremendous damage on plant tissues lead...

    Authors: Wenqi Dong, Lei Sun, Bo Jiao, Pu Zhao, Chunhong Ma, Junping Gao and Shuo Zhou
    Citation: BMC Genomics 2024 25:232
  15. Krüppel-like factor 1 (KLF1), a crucial erythroid transcription factor, plays a significant role in various erythroid changes and haemolytic diseases. The rare erythrocyte Lutheran inhibitor (In(Lu)) blood gro...

    Authors: Luyi Ye, Chen Wang, Aijing Li, Minghao Li, Yan Pi, Jingmin Yang, Ziyan Zhu and Daru Lu
    Citation: BMC Genomics 2024 25:230
  16. Alfalfa (Medicago sativa. L) is one of the best leguminous herbage in China and even in the world, with high nutritional and ecological value. However, one of the drawbacks of alfalfa is its sensitivity to dry co...

    Authors: Qian Ruan, Xiaoming Bai, Yizhen Wang, Xiaofang Zhang, Baoqiang Wang, Ying Zhao, Xiaolin Zhu and Xiaohong Wei
    Citation: BMC Genomics 2024 25:229
  17. Late embryogenesis abundant (LEA) proteins play important roles in plant growth and development, as well as stresses responsiveness. Nowadays, it has been found that LEAs also have function in fruit ripening. ...

    Authors: Yuanxiu Lin, Musha She, Mantong Zhao, Hong Yu, Wenfei Xiao, Yunting Zhang, Mengyao Li, Qing Chen, Yong Zhang, Yan Wang, Wen He, Xiaorong Wang, Haoru Tang and Ya Luo
    Citation: BMC Genomics 2024 25:228
  18. Hybridization capture-based targeted next generation sequencing (NGS) is gaining importance in routine cancer clinical practice. DNA library preparation is a fundamental step to produce high-quality sequencing...

    Authors: HuiJuan Chen, YiRan Zhang, Bing Wang, Rui Liao, XiaoHong Duan, ChunYan Yang, Jing Chen, YanTong Hao, YingShuang Shu, LiLi Cai, Xue Leng, Nian-Song Qian, DaWei Sun, Beifang Niu and Qiming Zhou
    Citation: BMC Genomics 2024 25:227
  19. Long-read sequencing is revolutionizing de-novo genome assemblies, with continued advancements making it more readily available for previously understudied, non-model organisms. Stony corals are one such example,...

    Authors: Benjamin D. Young, Olivia M. Williamson, Nicholas S. Kron, Natalia Andrade Rodriguez, Lys M. Isma, Nicholas J. MacKnight, Erinn M. Muller, Stephanie M. Rosales, Stephanie M. Sirotzke, Nikki Traylor-Knowles, Sara D. Williams and Michael S. Studivan
    Citation: BMC Genomics 2024 25:226
  20. In epigenetic modification, histone modification and DNA methylation coordinate the regulation of spermatogonium. Not only can methylcytosine dioxygenase 1 (TET1) function as a DNA demethylase, converting 5-me...

    Authors: Jin Wang, Lingling Liu, Zebin Li, Haoyu Wang, Yuanyuan Ren, Kaisheng Wang, Yang Liu, Xinjie Tao and Liming Zheng
    Citation: BMC Genomics 2024 25:225
  21. Switchgrass (Panicum virgatum L.) is a warm-season perennial (C4) grass identified as an important biofuel crop in the United States. It is well adapted to the marginal environment where heat and moisture stre...

    Authors: Vasudevan Ayyappan, Venkateswara R. Sripathi, Shaojun Xie, Malay C. Saha, Rita Hayford, Desalegn D. Serba, Mayavan Subramani, Jyothi Thimmapuram, Antonette Todd and Venu Kal Kalavacharla
    Citation: BMC Genomics 2024 25:223
  22. Shepherd's crook (Geodorum) is a genus of protected orchids that are valuable both medicinally and ornamentally. Geodorum eulophioides (GE) is an endangered and narrowly distributed species, and Geodorum densiflo...

    Authors: Jianxiu Liu, Danjuan Zeng, Yang Huang, Lisha Zhong, Jialin Liao, Yuxing Shi, Haidu Jiang, Yajin Luo, Yu Liang and Shengfeng Chai
    Citation: BMC Genomics 2024 25:222
  23. Wheat streak mosaic virus (WSMV) and Triticum mosaic virus (TriMV) are components of the wheat streak mosaic virus disease complex in the Great Plains region of the U.S.A. and elsewhere. Co-infection of wheat ...

    Authors: Inanc Soylu, Dilip K. Lakshman, Satyanarayana Tatineni, Leny C. Galvez and Amitava Mitra
    Citation: BMC Genomics 2024 25:221
  24. The appropriate mineral nutrients are essential for sheep growth and reproduction. However, traditional grazing sheep often experience mineral nutrient deficiencies, especially copper (Cu), due to inadequate m...

    Authors: Xiwei Jin, Lingbo Meng, Zhi Qi and Lan Mi
    Citation: BMC Genomics 2024 25:220
  25. Intramuscular fat (IMF) is an important factor in meat quality, and triglyceride (TG) and Phospholipids (PLIP), as the main components of IMF, are of great significance to the improvement of meat quality.

    Authors: Jinmei Zhu, Yongli Wang, Yongchun Su, Maiqing Zheng, Huanxian Cui and Zhiwu Chen
    Citation: BMC Genomics 2024 25:219
  26. The majority of CAKUT-associated CNVs overlap at least one miRNA gene, thus affecting the cellular levels of the corresponding miRNA. We aimed to investigate the potency of restitution of CNV-affected miRNA le...

    Authors: Kristina Mitrovic, Ivan Zivotic, Ivana Kolic, Jelena Zakula, Maja Zivkovic, Aleksandra Stankovic and Ivan Jovanovic
    Citation: BMC Genomics 2024 25:218
  27. The genomic region that lies between the telomere and chromosome body, termed the subtelomere, is heterochromatic, repeat-rich, and frequently undergoes rearrangement. Within this region, large-scale structura...

    Authors: T Brann, A Beltramini, C Chaparro, M Berriman, SR Doyle and AV Protasio
    Citation: BMC Genomics 2024 25:217
  28. Shewanella xiamenensis, widely distributed in natural environments, has long been considered as opportunistic pathogen. Recently, significant changes in the resistance spectrum have been observed in S. xiamenens...

    Authors: Haichen Wang, Fengjun Xia, Yubing Xia, Jun Li, Yongmei Hu, Yating Deng and Mingxiang Zou
    Citation: BMC Genomics 2024 25:216
  29. Phylogenetic gaps of public databases of reference sequences are a major obstacle for comparative genomics and management of marine resources, particularly in the Global South, where economically important fis...

    Authors: Marcela Alvarenga, Ananda Krishna Pereira D’Elia, Graciane Rocha, Clara Alvarez Arantes, Frederico Henning, Ana Tereza Ribeiro de Vasconcelos and Antonio Mateo Solé-Cava
    Citation: BMC Genomics 2024 25:215
  30. Peach bacterial shot hole, caused by Xanthomonas arboricola pv pruni (Xap), is a global bacterial disease that poses a threat to the yield and quality of cultivated peach trees (Prunus persica).

    Authors: Pengxiang Zhu, Haiyan Li, Tailiang Lu, Ruizheng Liang and Baoxiong Wan
    Citation: BMC Genomics 2024 25:214
  31. The stria vascularis (SV), located in the lateral wall of the cochlea, maintains cochlear fluid homeostasis and mechanoelectrical transduction (MET) activity required for sound wave conduction. The pathogenesi...

    Authors: Xi Gu, Kanglun Jiang, Ruru Chen, Zhifeng Chen, Xianmin Wu, Haijie Xiang, Xinsheng Huang and Benyu Nan
    Citation: BMC Genomics 2024 25:213
  32. Geoherb usually represents high-quality medicinal herbs with better clinical therapeutic effects, and elucidating the geoherbalism is essential for the quality improvement of traditional Chinese Medicine. Howe...

    Authors: Tao Zhou, Yadi Tang, Lipan Zhou, Jie Liu, Yang Pu, Fan Jiang, Jian Wang and Xumei Wang
    Citation: BMC Genomics 2024 25:212
  33. Due to its enormous biomass, Antarctic krill (Euphausia superba) plays a crucial role in the Antarctic Ocean ecosystem. In recent years, Antarctic krill has found extensive application in aquaculture, emerging as...

    Authors: Mengya Wang, Shaoxuan Wu, Hui Ding, Mingyi Wang, Jiayi Ma, Jie Xiao, Bo Wang, Zhenmin Bao and Jingjie Hu
    Citation: BMC Genomics 2024 25:210
  34. The sucrose nonfermenting-1-related protein kinase 2 (SnRK2) plays a crucial role in responses to diverse biotic/abiotic stresses. Currently, there are reports on these genes in Haynaldia villosa, a diploid wild ...

    Authors: Jia Liu, Luyang Wei, Yirong Wu, Zongkuan Wang, Haiyan Wang, Jin Xiao, Xiue Wang and Li Sun
    Citation: BMC Genomics 2024 25:209
  35. Polycystic ovary syndrome (PCOS) is a complex multifactorial disorder with a substantial genetic component. However, the clinical manifestations of PCOS are heterogeneous with notable differences between lean ...

    Authors: Kharis Burns, Benjamin H. Mullin, Loes M. E. Moolhuijsen, Triin Laisk, Jaakko S. Tyrmi, Jinrui Cui, Ky’Era V. Actkins, Yvonne V. Louwers, Lea K. Davis, Frank Dudbridge, Ricardo Azziz, Mark O. Goodarzi, Hannele Laivuori, Reedik Mägi, Jenny A. Visser, Joop S. E. Laven…
    Citation: BMC Genomics 2024 25:208
  36. Darjeeling tea is a globally renowned beverage, which faces numerous obstacles in sexual reproduction, such as self-incompatibility, poor seed germination, and viability, as well as issues with vegetative prop...

    Authors: Vivek Kumar Awon, Debabrata Dutta, Saptadipa Banerjee, Soumili Pal and Gaurab Gangopadhyay
    Citation: BMC Genomics 2024 25:207
  37. Pancreatic ductal adenocarcinoma (PDAC) is a lethal malignancy with a five-year survival rate of approximately 10%. Genetic mutations are pivotal drivers in PDAC pathogenesis, but recent investigations also re...

    Authors: Wenrui Han, Detong Shi, Qiu Yang, Xinxin Li, Jian Zhang, Cheng Peng and Fang Yan
    Citation: BMC Genomics 2024 25:206
  38. Immunogenic cell death (ICD) has been identified as regulated cell death, which is sufficient to activate the adaptive immune response. This study aimed to research ICD-related genes and create a gene model to...

    Authors: Xiaobo Wang, Tianxiang Ren, Chuting Liao, Yong Xie and Jing Cao
    Citation: BMC Genomics 2024 25:205
  39. Medicago truncatula, model legume and alfalfa relative, has served as an essential resource for advancing our understanding of legume physiology, functional genetics, and crop improvement traits. Necrotrophic fun...

    Authors: Jacob R. Botkin, Andrew D. Farmer, Nevin D. Young and Shaun J. Curtin
    Citation: BMC Genomics 2024 25:204
  40. Firmiana danxiaensis is a critically endangered and ecologically important tree currently only found in four locations in Danxia or Karst habitats in northern Guangdong Province, China. The specialized habitat pr...

    Authors: Ya-li Li, Li-yun Nie, Shuang-wen Deng, Lei Duan, Zheng-feng Wang, Joseph L.M. Charboneau, Boon-Chuan Ho and Hong-feng Chen
    Citation: BMC Genomics 2024 25:203
  41. Transitions from sexual to asexual reproduction are common in eukaryotes, but the underlying mechanisms remain poorly known. The pea aphid—Acyrthosiphon pisum—exhibits reproductive polymorphism, with cyclical par...

    Authors: M. D. Huguet, S. Robin, S. Hudaverdian, S. Tanguy, N. Leterme-Prunier, R. Cloteau, S. Baulande, P. Legoix-Né, F. Legeai, J.-C. Simon, J. Jaquiéry, D. Tagu and G. Le Trionnaire
    Citation: BMC Genomics 2024 25:202
  42. To gain a deeper understanding of the metabolic differences within and outside the body, as well as changes in transcription levels following estrus in yaks, we conducted transcriptome and metabolome analyses ...

    Authors: Huangqing Zhao, Yongzhen Huang, Shi Shu, Guowen Wang, Changqi Fu, Rong Huang, Jun Zhang, Huawei Su, Yang He, Chuzhao Lei, Lei Du, Jiahao Zhao and Wei Peng
    Citation: BMC Genomics 2024 25:201

    The Correction to this article has been published in BMC Genomics 2024 25:351

  43. Calmodulins (CaMs)/CaM-like proteins (CMLs) are crucial Ca2+-binding sensors that can decode and transduce Ca2+ signals during plant development and in response to various stimuli. The CaM/CML gene family has bee...

    Authors: Dong Yang, Ting Chen, Yushuang Wu, Huiquan Tang, Junyi Yu, Xiaoqiu Dai, Yixiong Zheng, Xiaorong Wan, Yong Yang and Xiaodan Tan
    Citation: BMC Genomics 2024 25:200
  44. Abiotic stresses in plants include all the environmental conditions that significantly reduce yields, like drought and heat. One of the most significant effects they exert at the cellular level is the accumula...

    Authors: Marco Moroldo, Nicolas Blanchet, Harold Duruflé, Stéphane Bernillon, Thierry Berton, Olivier Fernandez, Yves Gibon, Annick Moing and Nicolas B. Langlade
    Citation: BMC Genomics 2024 25:199
  45. Cervical cancer (CC) causes more than 311,000 deaths annually worldwide. The integration of human papillomavirus (HPV) is a crucial genetic event that contributes to cervical carcinogenesis. Despite HPV DNA in...

    Authors: Zhijie Wang, Chen Liu, Wanxin Liu, Xinyi Lv, Ting Hu, Fan Yang, Wenhui Yang, Liang He and Xiaoyuan Huang
    Citation: BMC Genomics 2024 25:198
  46. Non-alcoholic fatty liver disease (NAFLD) has rapidly become the most common cause of chronic liver disease in children and adolescents, but its etiology remains largely unknown. Adrenarche is a critical phase...

    Authors: Haoqing Li, Yingyu Liu, Fengyan Meng, Junan Chen and Xingfa Han
    Citation: BMC Genomics 2024 25:190

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