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  1. The tumor immune microenvironment (TIME) of colon cancer (CC) has been associated with extensive immune cell infiltration (IMI). Increasing evidence demonstrated that plasma cells (PC) have an extremely import...

    Authors: Qi Zhang, Xiao Feng, Mingming Zhang, Wenjing Sun, Yuqing Zhai, Shuangshuang Qing, Ying Liu, Haoran Zhao, Jing Sun, Yi Zhang and Chaoqun Ma
    Citation: BMC Genomics 2023 24:430
  2. The adaptive evolution of plateau indigenous animals is a current research focus. However, phenotypic adaptation is complex and may involve the interactions between multiple genes or pathways, many of which re...

    Authors: Cuiling Wu, Shengchao Ma, Bingru Zhao, Chongkai Qin, Yujiang Wu, Jiang Di, Langda Suo and Xuefeng Fu
    Citation: BMC Genomics 2023 24:428
  3. The study of the host-microbiome by the collection of non-invasive samples has the potential to become a powerful tool for conservation monitoring and surveillance of wildlife. However, multiple factors can bi...

    Authors: Alejandro Oliveros, Julien Terraube, Alexis L. Levengood, Daniel Powell and Céline H. Frère
    Citation: BMC Genomics 2023 24:427
  4. Comprehensive analysis of multiple data sets can identify potential driver genes for various cancers. In recent years, driver gene discovery based on massive mutation data and gene interaction networks has att...

    Authors: Xin Chu, Boxin Guan, Lingyun Dai, Jin-xing Liu, Feng Li and Junliang Shang
    Citation: BMC Genomics 2023 24:426
  5. Growing evidence indicates that RNA methylation plays a fundamental role in epigenetic regulation, which is associated with the tumorigenesis and drug resistance. Among them, acute myeloid leukemia (AML), as t...

    Authors: Jingyi Han, Qinqin Liu, Yao Zhou, Dong Li and Ran Wang
    Citation: BMC Genomics 2023 24:425
  6. Non-coding RNAs (ncRNAs) draw much attention from studies widely in recent years because they play vital roles in life activities. As a good complement to wet experiment methods, computational prediction metho...

    Authors: Ning Ai, Yong Liang, Haoliang Yuan, Dong Ouyang, Shengli Xie and Xiaoying Liu
    Citation: BMC Genomics 2023 24:424
  7. Long terminal repeat (LTR)-retrotransposons (LTR-RTs) are ubiquitous and make up the majority of nearly all sequenced plant genomes, whereas their pivotal roles in genome evolution, gene expression regulation ...

    Authors: Long-Long Yang, Xin-Yu Zhang, Li-Ying Wang, Yan-Ge Li, Xiao-Ting Li, Yi Yang, Qing Su, Ning Chen, Yu-Lan Zhang, Ning Li, Chuan-Liang Deng, Shu-Fen Li and Wu-Jun Gao
    Citation: BMC Genomics 2023 24:423
  8. Microcephaly is caused by reduced brain volume and most usually associated with a variety of neurodevelopmental disorders (NDDs). To provide an overview of the diagnostic yield of whole exome sequencing (WES) ...

    Authors: Chunli Wang, Wei Zhou, Luyan Zhang, Luhan Fu, Wei Shi, Yan Qing, Fen Lu, Jian Tang, Xiucheng Gao, Aihua Zhang, Zhanjun Jia, Yue Zhang, Xiaoke Zhao and Bixia Zheng
    Citation: BMC Genomics 2023 24:422
  9. Peanut is an economically-important oilseed crop and needs a large amount of calcium for its normal growth and development. Calcium deficiency usually leads to embryo abortion and subsequent abnormal pod devel...

    Authors: Kang Tang, Lin Li, Bowen Zhang, Wei Zhang, Ningbo Zeng, Hao Zhang, Dengwang Liu and Zinan Luo
    Citation: BMC Genomics 2023 24:421
  10. The interaction networks between coding and non-coding RNAs (ncRNAs) including long non-coding RNA (lncRNA), covalently closed circular RNA (circRNA) and miRNA are significant to elucidate molecular processes ...

    Authors: Zigang Shen, Qiong Yang, Lie Luo, Tangxin Li, Zhuojun Ke, Tian Li, Jie Chen, Xianzhi Meng, Heng Xiang, Chunfeng Li, Zeyang Zhou, Ping Chen and Guoqing Pan
    Citation: BMC Genomics 2023 24:420
  11. Calcific aortic valve disease (CAVD) is a common valve disease with an increasing incidence, but no effective drugs as of yet. With the development of sequencing technology, non-coding RNAs have been found to ...

    Authors: Yuqi Zheng, Shuyu Wen, Shijiu Jiang, Shaolin He, Weihua Qiao, Yi Liu, Wenling Yang, Jin Zhou, Boyuan Wang, Dazhu Li and Jibin Lin
    Citation: BMC Genomics 2023 24:419
  12. Sepsis is a life-threatening condition characterized by a harmful host response to infection with organ dysfunction. Annually about 20 million people are dead owing to sepsis and its mortality rates is as high...

    Authors: Xiaojun Liu, Chengying Hong, Yichun Jiang, Wei Li, Youlian Chen, Yonghui Ma, Pengfei Zhao, Tiyuan Li, Huaisheng Chen, Xueyan Liu and Lixin Cheng
    Citation: BMC Genomics 2023 24:418
  13. Non-coding RNAs play important roles in liver regeneration; however, their functions and mechanisms of action in the regeneration of fibrotic liver have not been elucidated. We aimed to clarify the expression ...

    Authors: Qian Wang, Zhangtao Long, Fengfeng Zhu, Huajian Li, Zhiqiang Xiang, Hao Liang, Yachen Wu, Xiaoming Dai and Zhu Zhu
    Citation: BMC Genomics 2023 24:417
  14. Diaphorina citri Kuwayama is an important citrus pest. It serves as the vector for the transmission of Candidatus Liberibacter asiaticus (CLas), which induced a destructive disease, Huanglongbing, and caused huge...

    Authors: Jinghua Dai, Xueming Cai, Luyang Liu, Yanzheng Lin, Yuting Huang, Jintian Lin and Benshui Shu
    Citation: BMC Genomics 2023 24:416
  15. Skeletal muscle is the largest tissue in the body, and it affects motion, metabolism and homeostasis. Skeletal muscle development comprises myoblast proliferation, fusion and differentiation to form myotubes, ...

    Authors: Haigang Cao, Tianning Du, Chenchen Li, Lingling Wu, Jieming Liu, Yuan Guo, Xiao Li, Gongshe Yang, Jianjun Jin and Xin’e Shi
    Citation: BMC Genomics 2023 24:415
  16. Nonalcoholic fatty liver disease (NAFLD) is characterized by excessive liver fat deposition, and progresses to liver cirrhosis, and even hepatocellular carcinoma. However, the invasive diagnosis of NAFLD with ...

    Authors: Zhengmao Song, Yun Wang, Pingli Lin, Kaichun Yang, Xilin Jiang, Junchen Dong, Shangjin Xie, Rong Rao, Lishan Cui, Feng Liu and Xuefeng Huang
    Citation: BMC Genomics 2023 24:414
  17. Sugar beet (Beta vulgaris L.) is an economically essential sugar crop worldwide. Its agronomic traits are highly diverse and phenotypically plastic, influencing taproot yield and quality. The National Beet Medium...

    Authors: Dali Liu, Wenbo Tan, Hao Wang, Wangsheng Li, Jingjing Fu, Jiajia Li, Yuanhang Zhou, Ming Lin and Wang Xing
    Citation: BMC Genomics 2023 24:413
  18. One of the most critical periods for the loss of pig embryos is the 12th day of gestation when implantation begins. Recent studies have shown that non-coding RNAs (ncRNAs) play important regulatory roles durin...

    Authors: Chen Zhou, Xinyan Cheng, Fanming Meng, Yongzhong Wang, Wanyun Luo, Enqin Zheng, Gengyuan Cai, Zhenfang Wu, Zicong Li and Linjun Hong
    Citation: BMC Genomics 2023 24:412
  19. The comorbidities of coronary artery disease (CAD) and rheumatoid arthritis (RA) are mutual risk factors, which lead to higher mortality, but the biological mechanisms connecting the two remain unclear. Here, ...

    Authors: Siqi Zhang, Qikai Niu, Lin Tong, Sihong Liu, Pengqian Wang, Haiyu Xu, Bing Li and Huamin Zhang
    Citation: BMC Genomics 2023 24:411
  20. The global dairy industry is currently facing the challenge of heat stress (HS). Despite the implementation of various measures to mitigate the negative impact of HS on milk production, the cellular response o...

    Authors: Guangsheng Li, Xingtan Yu, Ananda B. Portela Fontoura, Awais Javaid, Víctor Sáinz de la Maza-Escolà, Nia S. Salandy, Susan L. Fubini, Ester Grilli, Joseph. W. McFadden and Jingyue Ellie Duan
    Citation: BMC Genomics 2023 24:410
  21. Muscadine grape (Vitis rotundifolia) is resistant to many of the pathogens that negatively impact the production of common grape (V. vinifera), including the bacterial pathogen Xylell...

    Authors: Matthew Huff, Amanda M. Hulse-Kemp, Brian E Scheffler, Ramey C Youngblood, Sheron A Simpson, Ebrahiem Babiker and Margaret Staton
    Citation: BMC Genomics 2023 24:409
  22. The group of > 40 cryptic whitefly species called Bemisia tabaci sensu lato are amongst the world’s worst agricultural pests and plant-virus vectors. Outbreaks of B. tabaci s.l. and the associated plant-virus dis...

    Authors: Lahcen I. Campbell, Joachim Nwezeobi, Sharon L. van Brunschot, Tadeo Kaweesi, Susan E. Seal, Rekha A. R. Swamy, Annet Namuddu, Gareth L. Maslen, Habibu Mugerwa, Irina M. Armean, Leanne Haggerty, Fergal J. Martin, Osnat Malka, Diego Santos-Garcia, Ksenia Juravel, Shai Morin…
    Citation: BMC Genomics 2023 24:408
  23. Autosomal dominant polycystic kidney disease (ADPKD) is a common monogenic multisystem disease caused primarily by mutations in the PKD1 gene or PKD2 gene. There is increasing evidence that some of these variants...

    Authors: Xuyan Liu, Xiaomeng Shi, Qing Xin, Zhiying Liu, Fengjiao Pan, Dan Qiao, Mengke Chen, Yiyin Zhang, Wencong Guo, Changying Li, Yan Zhang, Leping Shao and Ruixiao Zhang
    Citation: BMC Genomics 2023 24:407
  24. A Disintegrin and Metalloproteinase (ADAM) and A Disintegrin and Metalloproteinase with Thrombospondin Motif (ADAMTS) have been reported potentially involved in bone metabolism and related to bone mineral dens...

    Authors: Xin Lv, Yuhong Lin, Zhilei Zhang, Bo Li, Ziliang Zeng, Xu Jiang, Qiancheng Zhao, Wenpeng Li, Zheyu Wang, Canchun Yang, Haolin Yan, Qiwei Wang, Renyuan Huang, Xumin Hu and Liangbin Gao
    Citation: BMC Genomics 2023 24:406
  25. Preterm labor syndrome is associated with high perinatal morbidity and mortality, and intra-amniotic infection is a cause of preterm labor. The standard identification of causative microorganisms is based on t...

    Authors: Pisut Pongchaikul, Roberto Romero, Paninee Mongkolsuk, Pornpun Vivithanaporn, Thidathip Wongsurawat, Piroon Jenjaroenpun, Perapon Nitayanon, Iyarit Thaipisuttikul, Threebhorn Kamlungkuea, Arunee Singsaneh, Pitak Santanirand and Piya Chaemsaithong
    Citation: BMC Genomics 2023 24:405
  26. Genome-wide dysregulation of CpG methylation accompanies tumor progression and characteristic states of cancer cells, prompting a rationale for biomarker development. Understanding how the archetypic epigeneti...

    Authors: A-Reum Nam, Min Heo, Kang-Hoon Lee, Ji-Yoon Kim, Sung-Ho Won and Je-Yoel Cho
    Citation: BMC Genomics 2023 24:403
  27. Self-incompatibility (SI) is a reproductive protection mechanism that plants acquired during evolution to prevent self-recession. As the female determinant of SI specificity, SRK has been shown to be the only rec...

    Authors: Chenggang Xiang, Hongzheng Tao, Tiantao Wang, Hengling Meng, Dejun Guan, He Li, Xiang Wei and Wei Zhang
    Citation: BMC Genomics 2023 24:402
  28. Bacteria of the Borrelia burgdorferi sensu lato (s.l.) complex can cause Lyme borreliosis. Different B. burgdorferi s.l. genospecies vary in their host and vector associations and human pathogenicity but the gene...

    Authors: Sabrina Hepner, Konstantin Kuleshov, Ave Tooming-Kunderud, Nikolas Alig, Alexander Gofton, Sherwood Casjens, Robert E. Rollins, Alexandra Dangel, Evangelos Mourkas, Samuel K. Sheppard, Andreas Wieser, Johannes Hübner, Andreas Sing, Volker Fingerle and Gabriele Margos
    Citation: BMC Genomics 2023 24:401
  29. Drug resistant Mycobacterium tuberculosis prevention and care is a major challenge in Ethiopia. The World health organization has designated Ethiopia as one of the 30 high burden multi-drug resistant tuberculosis...

    Authors: Agumas Shibabaw, Baye Gelaw, Mostafa Ghanem, Noah Legall, Angie M. Schooley, Marty K. Soehnlen, Liliana C.M. Salvador, Wondwossen Gebreyes, Shu-Hua Wang and Belay Tessema
    Citation: BMC Genomics 2023 24:400
  30. Quinoa is a highly nutritious and novel crop that is resistant to various abiotic stresses. However, its growth and development is restricted due to its limited utilization of soil phosphorus. Studies on the l...

    Authors: Shan Zhang, Jian Liu, Lian Shi, Qianchao Wang, Ping Zhang, Hongxin Wang, Junna Liu, Hanxue Li, Li Li, Xinyi Li, Liubin Huang and Peng Qin
    Citation: BMC Genomics 2023 24:399
  31. Chimerism is the phenomenon when several genotypes coexist in a single individual. Used to understand plant ontogenesis they also have been valorised through new cultivar breeding. Viticulture has been taking ...

    Authors: V. Sichel, G. Sarah, N. Girollet, V. Laucou, C. Roux, M. Roques, P. Mournet, L. Le Cunff, P.F. Bert, P. This and T. Lacombe
    Citation: BMC Genomics 2023 24:396
  32. Sheep genomes undergo numerous genes losses, gains and mutation that generates genome variability among breeds of the same species after long time natural and artificial selection. However, the microevolution ...

    Authors: Mengting Zhu, Yonglin Yang, Hua Yang, Zongsheng Zhao, Hongmei Zhang, Hugh T. Blair, Wei Zheng, Mingyuan Wang, Chenhui Fang, Qian Yu, Huaqian Zhou and Hangdong Qi
    Citation: BMC Genomics 2023 24:392
  33. Whole-genome doubling (WGD) has been observed in 30% of cancers, followed by a highly complex rearranged karyotype unfavourable to breast cancer's outcome. However, the macro-alterations that characterise live...

    Authors: Yu Fan, Linglin Zou, Xiaorong Zhong, Zhu Wang, Yu Wang, Chuanxu Luo, Hong Zheng and Yanping Wang
    Citation: BMC Genomics 2023 24:391
  34. The mountain pine beetle, Dendroctonus ponderosae, is an irruptive bark beetle that causes extensive mortality to many pine species within the forests of western North America. Driven by climate change and wildfi...

    Authors: Janet X. Li, Kleinberg X. Fernandez, Carol Ritland, Sharon Jancsik, Daniel B. Engelhardt, Lauren Coombe, René L. Warren, Marco J. van Belkum, Allan L. Carroll, John C. Vederas, Joerg Bohlmann and Inanc Birol
    Citation: BMC Genomics 2023 24:390
  35. The development of asymmetric chick gonads involves separate developmental programs in the left and right gonads. In contrast to the left ovary developing into a fully functional reproductive organ, the right ...

    Authors: Mingxia Ran, Qingyuan Ouyang, Xuejian Li, Shenqiang Hu, Bo Hu, Jiwei Hu, Dan Dong, Liang Li, Hua He, Hehe Liu and Jiwen Wang
    Citation: BMC Genomics 2023 24:389
  36. Authors: Elena V. Demidova, Ilya G. Serebriiskii, Ramilia Vlasenkova, Simon Kelow, Mark D. Andrake, Tiffiney R. Hartman, Tatiana Kent, James Virtucio, Gail L. Rosen, Richard T. Pomerantz, Roland L. Dunbrack Jr., Erica A. Golemis, Michael J. Hall, David Y. T. Chen, Mary B. Daly and Sanjeevani Arora
    Citation: BMC Genomics 2023 24:388

    The original article was published in BMC Genomics 2023 24:212

  37. Accessory proteins have diverse roles in coronavirus pathobiology. One of them in SARS-CoV (the causative agent of the severe acute respiratory syndrome outbreak in 2002–2003) is encoded by the open reading fr...

    Authors: Anastassia Bykova, Andreu Saura, Galina V. Glazko, Abiel Roche-Lima, Vyacheslav Yurchenko and Igor B. Rogozin
    Citation: BMC Genomics 2023 24:387
  38. The development of abdominal fat and meat quality are closely related and can impact economic efficiency. In this study, we conducted transcriptome sequencing of the abdominal fat tissue of Gushi chickens at 6...

    Authors: Bin Zhai, Hongtai Li, Shuaihao Li, Jinxing Gu, Hongyuan Zhang, Yanhua Zhang, Hong Li, Yadong Tian, Guoxi Li and Yongcai Wang
    Citation: BMC Genomics 2023 24:386
  39. The chlorophyll content (CC) is a key factor affecting maize photosynthetic efficiency and the final yield. However, its genetic basis remains unclear. The development of statistical methods has enabled resear...

    Authors: Xuehang Xiong, Jianxin Li, Pingping Su, Haiyang Duan, Li Sun, Shuhao Xu, Yan Sun, Haidong Zhao, Xiaoyang Chen, Dong Ding, Xuehai Zhang and Jihua Tang
    Citation: BMC Genomics 2023 24:384
  40. Biological mechanisms affecting gametogenesis, embryo development and postnatal viability have the potential to alter Mendelian inheritance expectations resulting in observable transmission ratio distortion (T...

    Authors: Samir Id-Lahoucine, Joaquim Casellas, Aroa Suárez-Vega, Pablo A. S. Fonseca, Flavio S. Schenkel, Mehdi Sargolzaei and Angela Cánovas
    Citation: BMC Genomics 2023 24:383
  41. Systematic description of library quality and sequencing performance of single-cell RNA sequencing (scRNA-seq) data is imperative for subsequent downstream modules, including re-pooling libraries. While severa...

    Authors: Isar Nassiri, Benjamin Fairfax, Angela Lee, Yanxia Wu, David Buck and Paolo Piazza
    Citation: BMC Genomics 2023 24:381
  42. Dendrobium officinale Kimura et Migo (D. officinale) is a well-known traditional Chinese medicine with high content polysaccharides in stems. The SWEET (Sugars Will Eventually be Exported Transporters) family is ...

    Authors: Li Hao, Xin Shi, Shunwang Qin, Jiahong Dong, Huan Shi, Yuehua Wang and Yi Zhang
    Citation: BMC Genomics 2023 24:378

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