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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Prasinophytes are widespread marine green algae that are related to plants. Cellular abundance of the prasinophyte Micromonas has reportedly increased in the Arctic due to climate-induced changes. Thus, studies o...

    Authors: Marijke J. van Baren, Charles Bachy, Emily Nahas Reistetter, Samuel O. Purvine, Jane Grimwood, Sebastian Sudek, Hang Yu, Camille Poirier, Thomas J. Deerinck, Alan Kuo, Igor V. Grigoriev, Chee-Hong Wong, Richard D. Smith, Stephen J. Callister, Chia-Lin Wei, Jeremy Schmutz…
    Citation: BMC Genomics 2016 17:267
    Content type: Research article Published on:

  2. Auxin responsive factor (ARF) family is one of core components in auxin signalling pathway, which governs diverse developmental processes and stress responses. Blueberry is an economically important berry-bear...

    Authors: Xuyan Li, Xiaoyi Zhang, Tianran Shi, Min Chen, Chengguo Jia, Jingying Wang, Zhixia Hou, Junyou Han and Shaomin Bian
    Citation: BMC Genomics 2022 23:329
    Content type: Research Published on:

  3. Diatoms are able to acclimate to frequent and large light fluctuations in the surface ocean waters. However, the molecular mechanisms underlying these acclimation responses of diaotms remain elusive.

    Authors: Hong-Po Dong, Yue-Lei Dong, Lei Cui, Srinivasan Balamurugan, Jian Gao, Song-Hui Lu and Tao Jiang
    Citation: BMC Genomics 2016 17:994
    Content type: Research article Published on:

  4. Genome-scale RNA-interference (RNAi) screens are becoming ever more common gene discovery tools. However, whilst every screen identifies interacting genes, less attention has been given to how factors such as ...

    Authors: Katherine H Fisher, Victoria M Wright, Amy Taylor, Martin P Zeidler and Stephen Brown
    Citation: BMC Genomics 2012 13:506
    Content type: Research article Published on:

  5. Novosphingobium sp. strain PP1Y is a marine α-proteobacterium adapted to grow at the water/fuel oil interface. It exploits the aromatic fraction of fuel oils as a carbon and energy source. PP1Y is able to grow on...

    Authors: Valeria D’Argenio, Eugenio Notomista, Mauro Petrillo, Piergiuseppe Cantiello, Valeria Cafaro, Viviana Izzo, Barbara Naso, Luca Cozzuto, Lorenzo Durante, Luca Troncone, Giovanni Paolella, Francesco Salvatore and Alberto Di Donato
    Citation: BMC Genomics 2014 15:384
    Content type: Research article Published on:

  6. Diversity among phenology-related genes is predicted to be a contributing factor in local adaptations seen in widely distributed plant species that grow in climatically variable geographic areas, such as fores...

    Authors: Joanna Meger, Bartosz Ulaszewski and Jaroslaw Burczyk
    Citation: BMC Genomics 2021 22:583
    Content type: Research Published on:

  7. Although, oocytes from prepubertal donors are known to be less developmentally competent than those from adult donors it does not restrain their ability to produce full-term pregnancies. The transcriptomic pro...

    Authors: Milena Traut, Ilona Kowalczyk-Zieba, Dorota Boruszewska, Joanna Jaworska, Sandra Gąsiorowska, Krzysztof Lukaszuk, Katarzyna Ropka-Molik, Katarzyna Piórkowska, Tomasz Szmatoła and Izabela Woclawek-Potocka
    Citation: BMC Genomics 2024 25:632
    Content type: Research Published on:

  8. Nicotiana rustica (Aztec tobacco), like common tobacco (Nicotiana tabacum), is an allotetraploid formed through a recent hybridization event; however, it originated from completely different progenitor species. H...

    Authors: N. Sierro, J. N. D. Battey, L. Bovet, V. Liedschulte, S. Ouadi, J. Thomas, H. Broye, H. Laparra, A. Vuarnoz, G. Lang, S. Goepfert, M. C. Peitsch and N. V. Ivanov
    Citation: BMC Genomics 2018 19:855
    Content type: Research article Published on:

  9. Bats are an extremely successful group of mammals and possess a variety of unique characteristics, including their ability to co-exist with a diverse range of pathogens. The major histocompatibility complex (M...

    Authors: Justin H. J. Ng, Mary Tachedjian, Lin-Fa Wang and Michelle L. Baker
    Citation: BMC Genomics 2017 18:388
    Content type: Research article Published on:

  10. Insect mitochondrial genomes (mitogenomes) are the most extensively used genetic marker for evolutionary and population genetics studies of insects. The Pentatomoidea superfamily is economically important and ...

    Authors: Ming-Long Yuan, Qi-Lin Zhang, Zhong-Long Guo, Juan Wang and Yu-Ying Shen
    Citation: BMC Genomics 2015 16:460
    Content type: Research article Published on:

  11. White spot syndrome (WSS) is a viral disease that affects most of the commercially important shrimps and causes serious economic losses to the shrimp farming industry worldwide. However, little information is ...

    Authors: Jiann-Horng Leu, Chih-Chin Chang, Jin-Lu Wu, Chun-Wei Hsu, Ikuo Hirono, Takashi Aoki, Hsueh-Fen Juan, Chu-Fang Lo, Guang-Hsiung Kou and Hsuan-Cheng Huang
    Citation: BMC Genomics 2007 8:120
    Content type: Research article Published on:

  12. Parasitoid wasps are well-known natural enemies of major agricultural pests and arthropod borne diseases. The parasitoid wasp Macrocentrus cingulum (Hymenoptera: Braconidae) has been widely used to control the no...

    Authors: Chuanlin Yin, Meizhen Li, Jian Hu, Kun Lang, Qiming Chen, Jinding Liu, Dianhao Guo, Kang He, Yipei Dong, Jiapeng Luo, Zhenkun Song, James R. Walters, Wenqing Zhang, Fei Li and Xuexin Chen
    Citation: BMC Genomics 2018 19:420
    Content type: Research article Published on:

  13. The oral cavity is inhabited by complex microbial communities forming biofilms that can cause caries and periodontitis. Cell-cell communication might play an important role in modulating the physiologies of in...

    Authors: Szymon P. Szafrański, Zhi-Luo Deng, Jürgen Tomasch, Michael Jarek, Sabin Bhuju, Manfred Rohde, Helena Sztajer and Irene Wagner-Döbler
    Citation: BMC Genomics 2017 18:238
    Content type: Research article Published on:

  15. Salmonella bongori infect mainly cold-blooded hosts, but infections by S. bongori in warm-blooded hosts have been reported. We hypothesized that S. bongori might have diverged into distinct phylogenetic lineages,...

    Authors: Xiaoyu Wang, Songling Zhu, Jian-Hua Zhao, Hong-Xia Bao, Huidi Liu, Tie-Min Ding, Gui-Rong Liu, Yong-Guo Li, Randal N. Johnston, Feng-Lin Cao, Le Tang and Shu-Lin Liu
    Citation: BMC Genomics 2019 20:930
    Content type: Research article Published on:

  16. The chicken eggshell is a natural mechanical barrier to protect egg components from physical damage and microbial penetration. Its integrity and strength is critical for the development of the embryo or to ens...

    Authors: Aurélien Brionne, Yves Nys, Christelle Hennequet-Antier and Joël Gautron
    Citation: BMC Genomics 2014 15:220
    Content type: Research article Published on:

  17. Shiga toxin-producing Escherichia coli O157:H7 is a foodborne pathogen that causes severe human diseases including hemolytic uremic syndrome (HUS). The virulence factor that mediates HUS, Shiga toxin (Stx), is en...

    Authors: Shuang Yin, Brigida Rusconi, Fatemeh Sanjar, Kakolie Goswami, Lingzi Xiaoli, Mark Eppinger and Edward G. Dudley
    Citation: BMC Genomics 2015 16:733
    Content type: Research article Published on:

  19. Many studies on long chain non-coding RNAs (lncRNAs) are published in recent years. But the roles of lncRNAs in aortic dissection (AD) are still unclear and should be further examined. The present work focused...

    Authors: Hao Zhang, Ce Bian, Simei Tu, Fanxing Yin, Panpan Guo, Jian Zhang, Xiaotong Song, Qingyang Liu, Chen Chen and Yanshuo Han
    Citation: BMC Genomics 2021 22:724
    Content type: Research Published on:

  20. Genetic progress for fertility and reproduction traits in dairy cattle has been limited due to the low heritability of most indicator traits. Moreover, most of the quantitative trait loci (QTL) and candidate g...

    Authors: Shi-Yi Chen, Flavio S. Schenkel, Ana L. P. Melo, Hinayah R. Oliveira, Victor B. Pedrosa, Andre C. Araujo, Melkaye G. Melka and Luiz F. Brito
    Citation: BMC Genomics 2022 23:331
    Content type: Research Published on:

  21. Recent advances in CRISPR technology have enabled us to perform gene knock-in in various species and cell lines. CRISPR-mediated knock-in requires donor DNA which serves as a template for homology-directed rep...

    Authors: Akira Mabuchi, Shoji Hata, Mariya Genova, Chiharu Tei, Kei K. Ito, Masayasu Hirota, Takuma Komori, Masamitsu Fukuyama, Takumi Chinen, Atsushi Toyoda and Daiju Kitagawa
    Citation: BMC Genomics 2023 24:289
    Content type: Research Published on:

  22. Prosopis alba (Fabaceae) is an important native tree adapted to arid and semiarid regions of north-western Argentina which is of great value as multipurpose species. Despite its importance, the genomic resources ...

    Authors: Susana L Torales, Máximo Rivarola, María F Pomponio, Sergio Gonzalez, Cintia V Acuña, Paula Fernández, Diego L Lauenstein, Aníbal R Verga, H Esteban Hopp, Norma B Paniego and Susana N Marcucci Poltri
    Citation: BMC Genomics 2013 14:705
    Content type: Research article Published on:

  23. One fundamental question in biology is how the evolution of eukaryotic signaling networks has taken place. “Loss of function” (lof) mutants from components of the high osmolarity glycerol (HOG) signaling pathw...

    Authors: Stefan Bohnert, Luis Antelo, Christiane Grünewald, Alexander Yemelin, Karsten Andresen and Stefan Jacob
    Citation: BMC Genomics 2019 20:763
    Content type: Research article Published on:

  24. A-to-I RNA editing is a co−/post-transcriptional modification catalyzed by ADAR enzymes, that deaminates Adenosines (A) into Inosines (I). Most of known editing events are located within inverted ALU repeats, ...

    Authors: Edoardo Giacopuzzi, Massimo Gennarelli, Chiara Sacco, Alice Filippini, Jessica Mingardi, Chiara Magri and Alessandro Barbon
    Citation: BMC Genomics 2018 19:963
    Content type: Research article Published on:

  25. The Western honey bee (Apis mellifera L.) is a critical component of human agriculture through its pollination activities. For years, beekeepers have controlled deadly pathogens such as Paenibacillus larvae, Nose...

    Authors: Maria Marta Guarna, Andony P Melathopoulos, Elizabeth Huxter, Immacolata Iovinella, Robert Parker, Nikolay Stoynov, Amy Tam, Kyung-Mee Moon, Queenie WT Chan, Paolo Pelosi, Rick White, Stephen F Pernal and Leonard J Foster
    Citation: BMC Genomics 2015 16:63
    Content type: Research article Published on:

  26. Gastric cancer is the fourth most common cancer and the second leading cause of cancer death worldwide. In order to understand the genetic background, we sequenced the whole exome and the whole genome of one m...

    Authors: Daniela Esser, Niklas Holze, Jochen Haag, Stefan Schreiber, Sandra Krüger, Viktoria Warneke, Philip Rosenstiel and Christoph Röcken
    Citation: BMC Genomics 2017 18:517
    Content type: Research article Published on:

  27. Agricultural environments have long presented an opportunity to study evolution in action, and genomic approaches are opening doors for testing hypotheses about adaptation to crops, pesticides, and fertilizers...

    Authors: Kristin L. Sikkink, Megan E. Kobiela and Emilie C. Snell-Rood
    Citation: BMC Genomics 2017 18:412
    Content type: Research article Published on:

  28. The European sea bass (Dicentrarchus labrax) is a marine fish of great importance for fisheries and aquaculture. Functional genomics offers the possibility to discover the molecular mechanisms underlying producti...

    Authors: Serena Ferraresso, Massimo Milan, Caterina Pellizzari, Nicola Vitulo, Richard Reinhardt, Adelino VM Canario, Tomaso Patarnello and Luca Bargelloni
    Citation: BMC Genomics 2010 11:354
    Content type: Research article Published on:

  29. Copy number variations (CNVs) are important and widely distributed in the genome. CNV detection opens a new avenue for exploring genes associated with complex traits in humans, animals and plants. Herein, we p...

    Authors: Yahui Gao, Jianping Jiang, Shaohua Yang, Yali Hou, George E Liu, Shengli Zhang, Qin Zhang and Dongxiao Sun
    Citation: BMC Genomics 2017 18:265
    Content type: Research article Published on:

  30. The MRL/MpJ mouse is a laboratory inbred strain known for regenerative abilities which are manifested by scarless closure of ear pinna punch holes. Enhanced healing responses have been reported in other organs...

    Authors: Justyna Podolak-Popinigis, Bartosz Górnikiewicz, Anna Ronowicz and Paweł Sachadyn
    Citation: BMC Genomics 2015 16:926
    Content type: Research article Published on:

  31. Candida species are the most common cause of opportunistic fungal infection worldwide. Recent sequencing efforts have provided a wealth of Candida genomic data. We have developed the Candida Gene Order Browser (C...

    Authors: David A Fitzpatrick, Peadar O'Gaora, Kevin P Byrne and Geraldine Butler
    Citation: BMC Genomics 2010 11:290
    Content type: Research article Published on:

  32. Traumatic brain injury (TBI) induces arachidonic acid (ArA) release from cell membranes. ArA metabolites form a class of over 50 bioactive eicosanoids that can induce both adaptive and/or maladaptive brain res...

    Authors: Matthew Birnie, Ryan Morrison, Ramatoulie Camara and Kenneth I Strauss
    Citation: BMC Genomics 2013 14:303
    Content type: Research article Published on:

  34. Genetic polymorphisms are known to influence milk production and composition. However, the genomic mechanisms involved in the genetic regulation of milk component synthesis are not completely understood. Micro...

    Authors: P. A. Billa, Y. Faulconnier, T. Ye, M. Chervet, F. Le Provost, J. A. A. Pires and C. Leroux
    Citation: BMC Genomics 2019 20:621
    Content type: Research article Published on:

  35. The white rot fungus Phlebia radiata, a type species of the genus Phlebia, is an efficient decomposer of plant cell wall polysaccharides, modifier of softwood and hardwood lignin, and is able to produce ethanol f...

    Authors: Mari Mäkinen, Jaana Kuuskeri, Pia Laine, Olli-Pekka Smolander, Andriy Kovalchuk, Zhen Zeng, Fred O. Asiegbu, Lars Paulin, Petri Auvinen and Taina Lundell
    Citation: BMC Genomics 2019 20:430
    Content type: Research article Published on:

  36. Argonaute proteins (AGOs) are important players in the regulation of plant development by directing sRNAs to target mRNAs. In maize (Zea mays), AGO18b is a tassel-enriched and grass-specific AGO. Previous studies...

    Authors: Wei Sun, Dong Chen, Yaqiang Xue, Lihong Zhai, Dan Zhang, Zheng Cao, Lei Liu, Chao Cheng, Yi Zhang and Zuxin Zhang
    Citation: BMC Genomics 2019 20:656
    Content type: Research article Published on:

  37. Microsporidia, parasitic fungi-related eukaryotes infecting many cell types in a wide range of animals (including humans), represent a serious health threat in immunocompromised patients. The 2.9 Mb genome of ...

    Authors: Diego Miranda-Saavedra, Michael JR Stark, Jeremy C Packer, Christian P Vivares, Christian Doerig and Geoffrey J Barton
    Citation: BMC Genomics 2007 8:309
    Content type: Research article Published on:

  38. MicroRNA (miRNA) which can act as post-transcriptional regulators of mRNAs via base-pairing with complementary sequences within mRNAs is involved in processes of the complex interaction between immune system a...

    Authors: Cheng Liu, Chun Yu, Guoxin Song, Xingchen Fan, Shuang Peng, Shiyu Zhang, Xin Zhou, Cheng zhang, Xiangnan Geng, Tongshan Wang, Wenfang Cheng and Wei Zhu
    Citation: BMC Genomics 2023 24:724
    Content type: Research Published on:

  39. The genetic diversity and gene pool characteristics must be clarified for efficient genome-wide association studies, genomic selection, and hybrid breeding. The aim of this study was to evaluate the genetic st...

    Authors: Mirosław Tyrka, Monika Mokrzycka, Beata Bakera, Dorota Tyrka, Magdalena Szeliga, Stefan Stojałowski, Przemysław Matysik, Michał Rokicki, Monika Rakoczy-Trojanowska and Paweł Krajewski
    Citation: BMC Genomics 2021 22:81
    Content type: Research article Published on:

  40. MicroRNAs (miRNA) are ~19–25 nucleotide long RNA molecules that fine tune gene expression through the inhibition of translation or degradation of the mRNA through incorporation into the RNA induced silencing c...

    Authors: Aaron Smith, John Calley, Sachin Mathur, Hui-Rong Qian, Han Wu, Mark Farmen, Florian Caiment, Pierre R. Bushel, Jianying Li, Craig Fisher, Patrick Kirby, Erik Koenig, David G. Hall and David E Watson
    Citation: BMC Genomics 2016 17:694
    Content type: Research article Published on:

  41. Amyloid-β plaques are a defining characteristic of Alzheimer Disease. However, Amyloid-β deposition is also found in other forms of dementia and in non-pathological contexts. Amyloid-β deposition is variable a...

    Authors: William G Tharp and Indra Neil Sarkar
    Citation: BMC Genomics 2013 14:290
    Content type: Research article Published on:

  42. Studies of non-model species are important for understanding the molecular processes underpinning phenotypic variation under natural ecological conditions. The common buzzard (Buteo buteo; Aves: Accipitriformes) ...

    Authors: Martina Pauli, Nayden Chakarov, Oliver Rupp, Jörn Kalinowski, Alexander Goesmann, Michael D. Sorenson, Oliver Krüger and Joseph Ivan Hoffman
    Citation: BMC Genomics 2015 16:1038
    Content type: Research article Published on:

  43. We performed whole human genome expression analysis in placenta tissue (normal and T21) samples in order to investigate gene expression into the pathogenesis of trisomy 21 (T21) placenta. We profiled the whole...

    Authors: Ji Hyae Lim, You Jung Han, Hyun Jin Kim, Dong Wook Kwak, So Yeon Park, Sun-Hee Chun and Hyun Mee Ryu
    Citation: BMC Genomics 2017 18:720
    Content type: Research article Published on:

  45. Flavonoids are important components that confer upon tea plants a unique flavour and health functions. However, the traditional breeding method for selecting a cultivar with a high or unique flavonoid content ...

    Authors: Li-Yi Xu, Li-Yuan Wang, Kang Wei, Li-Qiang Tan, Jing-Jing Su and Hao Cheng
    Citation: BMC Genomics 2018 19:955
    Content type: Research article Published on:

  46. Brazil is the third country most affected by Coronavirus disease-2019 (COVID-19), but viral evolution in municipality resolution is still poorly understood in Brazil and it is crucial to understand the epidemi...

    Authors: Vinícius Bonetti Franceschi, Gabriel Dickin Caldana, Amanda de Menezes Mayer, Gabriela Bettella Cybis, Carla Andretta Moreira Neves, Patrícia Aline Gröhs Ferrareze, Meriane Demoliner, Paula Rodrigues de Almeida, Juliana Schons Gularte, Alana Witt Hansen, Matheus Nunes Weber, Juliane Deise Fleck, Ricardo Ariel Zimerman, Lívia Kmetzsch, Fernando Rosado Spilki and Claudia Elizabeth Thompson
    Citation: BMC Genomics 2021 22:371
    Content type: Research Published on:

  47. The filamentous fungus Trichoderma harzianum is used as biological control agent of several plant-pathogenic fungi. In order to study the genome of this fungus, a functional genomics project called "TrichoEST" wa...

    Authors: Juan Antonio Vizcaíno, Francisco Javier González, M Belén Suárez, José Redondo, Julian Heinrich, Jesús Delgado-Jarana, Rosa Hermosa, Santiago Gutiérrez, Enrique Monte, Antonio Llobell and Manuel Rey
    Citation: BMC Genomics 2006 7:193
    Content type: Research article Published on:

  48. Massive mortality outbreaks affecting Pacific oyster (Crassostrea gigas) spat in various countries have been associated with the detection of a herpesvirus called ostreid herpesvirus type 1 (OsHV-1). However, few...

    Authors: Amélie Segarra, Florian Mauduit, Nicole Faury, Suzanne Trancart, Lionel Dégremont, Delphine Tourbiez, Philippe Haffner, Valérie Barbosa-Solomieu, Jean-François Pépin, Marie-Agnès Travers and Tristan Renault
    Citation: BMC Genomics 2014 15:580
    Content type: Research article Published on:

  49. Gene expression analysis by reverse transcription quantitative PCR (qPCR) is the most widely used method for analyzing the expression of a moderate number of genes and also for the validation of microarray res...

    Authors: Diego Robledo, Jorge Hernández-Urcera, Rosa M Cal, Belén G Pardo, Laura Sánchez, Paulino Martínez and Ana Viñas
    Citation: BMC Genomics 2014 15:648
    Content type: Research article Published on:

  50. Drug resistance in the malaria parasite Plasmodium falciparum severely compromises the treatment and control of malaria. A knowledge of the critical mutations conferring resistance to particular drugs is importan...

    Authors: Katarzyna Kinga Modrzynska, Alison Creasey, Laurence Loewe, Timothee Cezard, Sofia Trindade Borges, Axel Martinelli, Louise Rodrigues, Pedro Cravo, Mark Blaxter, Richard Carter and Paul Hunt
    Citation: BMC Genomics 2012 13:106
    Content type: Research article Published on:

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