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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 11 of 128

  1. Leaf pigment content is an important trait involved in environmental interactions. In order to determine its impact on drought tolerance in wheat, we characterized a pale-green durum wheat mutant (Triticum turgid...

    Authors: Ariadna Peremarti, Caterina Marè, Alessio Aprile, Enrica Roncaglia, Luigi Cattivelli, Dolors Villegas and Conxita Royo
    Citation: BMC Genomics 2014 15:125
    Content type: Research article Published on:

  2. The radiation bystander effect is an important component of the overall biological response of tissues and organisms to ionizing radiation, but the signaling mechanisms between irradiated and non-irradiated by...

    Authors: Shanaz A Ghandhi, Anshu Sinha, Marianthi Markatou and Sally A Amundson
    Citation: BMC Genomics 2011 12:2
    Content type: Research article Published on:

  3. It is well known that in the rhizosphere soluble Fe sources available for plants are mainly represented by a mixture of complexes between the micronutrient and organic ligands such as carboxylates and phytosid...

    Authors: Anita Zamboni, Laura Zanin, Nicola Tomasi, Linda Avesani, Roberto Pinton, Zeno Varanini and Stefano Cesco
    Citation: BMC Genomics 2016 17:35
    Content type: Research article Published on:

  4. Mammalian hepatic lipase (HL) genes are transcribed almost exclusively in hepatocytes. The basis for this liver-restricted expression is not completely understood. We hypothesized that the responsible cis-acti...

    Authors: Diederik van Deursen, Gert-Jan Botma, Hans Jansen and Adrie JM Verhoeven
    Citation: BMC Genomics 2007 8:99
    Content type: Research article Published on:

  5. As important female reproductive tissues, the rice (Oryza sativa L.) ovule and female gametophyte is significant in terms of their fertility. Long noncoding RNAs (lncRNAs) play important and wide-ranging roles in...

    Authors: Helian Liu, Ruihua Wang, Bigang Mao, Bingran Zhao and Jianbo Wang
    Citation: BMC Genomics 2019 20:90
    Content type: Research article Published on:

  6. Butterflies are popular model organisms to study physiological mechanisms underlying variability in oogenesis and egg provisioning in response to environmental conditions. Nothing is known, however, about; the...

    Authors: Jean-Michel Carter, Simon C Baker, Ryan Pink, David RF Carter, Aiden Collins, Jeremie Tomlin, Melanie Gibbs and Casper J Breuker
    Citation: BMC Genomics 2013 14:283
    Content type: Research article Published on:

  7. MiRNAs play essential roles in plant development and response to biotic and abiotic stresses through interaction with their target genes. The expression level of miRNAs shows great variations among different p...

    Authors: Shu-Yun Chen, Mei-Hsiu Su, Karl A. Kremling, Nicholas K. Lepak, M. Cinta Romay, Qi Sun, Peter J. Bradbury, Edward S. Buckler and Hsin-Mei Ku
    Citation: BMC Genomics 2020 21:689
    Content type: Research article Published on:

  8. As transcription factors, the TCP genes are considered to be promising targets for crop enhancement for their responses to abiotic stresses. However, information on the systematic characterization and functional ...

    Authors: Mingfang Yang, Guandi He, Qiandong Hou, Yu Fan, Lili Duan, Kuiyin Li, Xiaoliao Wei, Zhilang Qiu, Erjuan Chen and Tengbing He
    Citation: BMC Genomics 2022 23:415
    Content type: Research Published on:

  9. Gerbera hybrida is one of the most popular cut flowers in the world; however, stem bending, which always happens when gerbera flower harvested from the field, greatly limits its vase life. To date the molecular m...

    Authors: Yafei Ge, Qixian Lai, Ping Luo, Xiaojing Liu and Wen Chen
    Citation: BMC Genomics 2019 20:600
    Content type: Research article Published on:

  10. Cellular reprogramming in response to environmental stress involves alteration of gene expression, changes in the protein and metabolite profile for ensuring better stress management in plants. Similar to othe...

    Authors: Pratiti Dasgupta, Abhishek Das, Sambit Datta, Ishani Banerjee, Sucheta Tripathy and Shubho Chaudhuri
    Citation: BMC Genomics 2020 21:425
    Content type: Research article Published on:

  11. Alfalfa (Medicago sativa L.) is a forage legume with significant agricultural value worldwide. MicroRNAs (miRNAs) are key components of post-transcriptional gene regulation and essentially regulate many aspects o...

    Authors: Robert Pokoo, Shuchao Ren, Qingyi Wang, Christy M. Motes, Timothy D. Hernandez, Sayvan Ahmadi, Maria J. Monteros, Yun Zheng and Ramanjulu Sunkar
    Citation: BMC Genomics 2018 19(Suppl 10):913
    Content type: Research Published on:

    This article is part of a Supplement: Volume 19 Supplement 10

  12. Brassica seeds are important as basic units of plant growth and sources of vegetable oil. Seed development is regulated by many dynamic metabolic processes controlled by complex networks of spatially and temporal...

    Authors: Ram Kumar Basnet, Natalia Moreno-Pachon, Ke Lin, Johan Bucher, Richard G F Visser, Chris Maliepaard and Guusje Bonnema
    Citation: BMC Genomics 2013 14:840
    Content type: Research article Published on:

  13. It is well known that mushrooms produce defense proteins and secondary metabolites against predators and competitors; however, less is known about the correlation between the tissue-specific expression and the...

    Authors: David Fernando Plaza, Chia-Wei Lin, Niels Sebastiaan Johannes van der Velden, Markus Aebi and Markus Künzler
    Citation: BMC Genomics 2014 15:492
    Content type: Research article Published on:

  14. Cell-specific gene expression is controlled by epigenetic modifications and transcription factor binding. While genome-wide maps for these protein-DNA interactions have become widely available, quantitative co...

    Authors: Gabriele Schweikert, Botond Cseke, Thomas Clouaire, Adrian Bird and Guido Sanguinetti
    Citation: BMC Genomics 2013 14:826
    Content type: Methodology article Published on:

  16. Calcium ion is tightly regulated in body fluids and for euryhaline fish, which are exposed to rapid changes in environmental [Ca2+], homeostasis is especially challenging. The gill is the main organ of active cal...

    Authors: Patrícia IS Pinto, Hideo Matsumura, Michael AS Thorne, Deborah M Power, Ryohei Terauchi, Richard Reinhardt and Adelino VM Canário
    Citation: BMC Genomics 2010 11:476
    Content type: Research article Published on:

  17. Defining cell type-specific transcriptomes in mammals can be challenging, especially for unannotated regions of the genome. We have developed an analytical pipeline called groHMM for annotating primary transcr...

    Authors: Xin Luo, Minho Chae, Raga Krishnakumar, Charles G Danko and W Lee Kraus
    Citation: BMC Genomics 2014 15:155
    Content type: Research article Published on:

  18. Glucocorticoids (GCs) control expression of a large number of genes via binding to the GC receptor (GR). Transcription may be regulated either by binding of the GR dimer to DNA regulatory elements or by protei...

    Authors: Raoul Frijters, Wilco Fleuren, Erik JM Toonen, Jan P Tuckermann, Holger M Reichardt, Hans van der Maaden, Andrea van Elsas, Marie-Jose van Lierop, Wim Dokter, Jacob de Vlieg and Wynand Alkema
    Citation: BMC Genomics 2010 11:359
    Content type: Research article Published on:

  19. Many lines of evidence suggest that poly(ADP-ribose) polymerase-1 (Parp-1) is involved in transcriptional regulation of various genes as a coactivator or a corepressor by modulating chromatin structure. Howeve...

    Authors: Hideki Ogino, Tadashige Nozaki, Akemi Gunji, Miho Maeda, Hiroshi Suzuki, Tsutomu Ohta, Yasufumi Murakami, Hitoshi Nakagama, Takashi Sugimura and Mitsuko Masutani
    Citation: BMC Genomics 2007 8:41
    Content type: Research article Published on:

  20. Mammalian target of rapamycin (mTOR) is an evolutionarily conserved serine/threonine kinase that is a central regulator of cell growth and metabolism. CCI-779 is a specific inhibitor of the mTORC1 signaling pa...

    Authors: Yuting Fu, Xu Zheng, Xiaoyang Jia, Uyanga Binderiya, Yanfeng Wang, Wenlei Bao, Lili Bao, Keyu Zhao, Yu Fu, Huifang Hao and Zhigang Wang
    Citation: BMC Genomics 2016 17:879
    Content type: Research article Published on:

  22. Strand specific RNA sequencing is rapidly replacing conventional cDNA sequencing as an approach for assessing information about the transcriptome. Alongside improved laboratory protocols the development of bio...

    Authors: Benjamín Sigurgeirsson, Olof Emanuelsson and Joakim Lundeberg
    Citation: BMC Genomics 2014 15:631
    Content type: Methodology article Published on:

  23. Crustacean female sex hormone (CFSH) controls gradually developing adult female-specific morphological features essential for mating and brood care. Specifically, ovigerous hairs are developed during the prepu...

    Authors: Tao Wang, Tsvetan Bachvaroff and J. Sook Chung
    Citation: BMC Genomics 2023 24:764
    Content type: Research Published on:

  24. Initiation and elongation of RNA polymerase II (RNAPII) transcription is regulated by both DNA sequence and chromatin signals. Recent breakthroughs make it possible to measure the chromatin state and activity ...

    Authors: Yun Chen, Mette Jørgensen, Raivo Kolde, Xiaobei Zhao, Brian Parker, Eivind Valen, Jiayu Wen and Albin Sandelin
    Citation: BMC Genomics 2011 12:544
    Content type: Research article Published on:

  25. During murine hypothalamic development, different neuroendocrine cell phenotypes are generated in overlapping periods; this suggests that cell-type specific developmental programs operate to achieve complete m...

    Authors: Magdalena Guerra-Crespo, Carlos Pérez-Monter, Sarath Chandra Janga, Santiago Castillo-Ramírez, Rosa María Gutiérrez-Rios, Patricia Joseph-Bravo, Leonor Pérez-Martínez and Jean-Louis Charli
    Citation: BMC Genomics 2011 12:222
    Content type: Research article Published on:

  26. Human Mesenchymal Stromal/Stem Cells (MSCs) are adult multipotent cells that behave in a highly plastic manner, inhabiting the stroma of several tissues. The potential utility of MSCs is nowadays strongly inve...

    Authors: Beatriz Roson-Burgo, Fermin Sanchez-Guijo, Consuelo Del Cañizo and Javier De Las Rivas
    Citation: BMC Genomics 2014 15:910
    Content type: Research article Published on:

  27. Gilts experiencing sustained hyperprolactinemia from d 90 to 109 of gestation showed an early onset of lactogenesis coupled with premature mammary involution. To better understand the molecular mechanisms unde...

    Authors: Marie-France Palin, Anouk Caron and Chantal Farmer
    Citation: BMC Genomics 2023 24:40
    Content type: Research article Published on:

  28. During decidualization in endometrial stromal cells (ESCs), expressions of a number of genes and epigenetic modifications of histones are altered. However, there is little information about whether DNA methyla...

    Authors: Ryo Maekawa, Isao Tamura, Masahiro Shinagawa, Yumiko Mihara, Shun Sato, Maki Okada, Toshiaki Taketani, Hiroshi Tamura and Norihiro Sugino
    Citation: BMC Genomics 2019 20:324
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2024 25:343

  29. Neutrophils are the first effectors of inflammatory response triggered by mastitis infection, and are important defense cells against pathogenic Escherichia coli (E. coli). DNA methylation, as a critical epigenet...

    Authors: Zhihua Ju, Qiang Jiang, Jinpeng Wang, Xiuge Wang, Chunhong Yang, Yan Sun, Yaran Zhang, Changfa Wang, Yaping Gao, Xiaochao Wei, Minghai Hou and Jinming Huang
    Citation: BMC Genomics 2020 21:102
    Content type: Research article Published on:

  30. Interferons (IFNs) are potent antiviral cytokines capable of reprogramming the macrophage phenotype through the induction of interferon-stimulated genes (ISGs). Here we have used targeted RNA interference to s...

    Authors: Paul Lacaze, Sobia Raza, Garwin Sing, David Page, Thorsten Forster, Petter Storm, Marie Craigon, Tarif Awad, Peter Ghazal and Tom C Freeman
    Citation: BMC Genomics 2009 10:372
    Content type: Research article Published on:

  31. Dynamic transcriptional regulation is critical for an organism’s response to environmental signals and yet remains elusive to capture. Such transcriptional regulation is mediated by master transcription factor...

    Authors: Joan Doidy, Ying Li, Benjamin Neymotin, Molly B. Edwards, Kranthi Varala, David Gresham and Gloria M. Coruzzi
    Citation: BMC Genomics 2016 17:92
    Content type: Research article Published on:

  32. Rose is recognized as an important ornamental plant worldwide, and it is also one of the most widely used flowers in gardens. At present, the improvement of rose traits is still difficult and uncertain, and mo...

    Authors: Li Du, Xiaoling Kang, Haoran Guo, Zhongfeng Zhu, Rui Wu, Meijing Yuan and Chuanyu Ding
    Citation: BMC Genomics 2024 25:362
    Content type: Research Published on:

  33. The highest rates of cervical cancer are found in developing countries. Frontline monitoring has reduced these rates in developed countries and present day screening programs primarily identify precancerous le...

    Authors: Ashleen Shadeo, Raj Chari, Kim M Lonergan, Andrea Pusic, Dianne Miller, Tom Ehlen, Dirk Van Niekerk, Jasenka Matisic, Rebecca Richards-Kortum, Michele Follen, Martial Guillaud, Wan L Lam and Calum MacAulay
    Citation: BMC Genomics 2008 9:64
    Content type: Research article Published on:

  34. The composition of intramuscular fat depends on genetic and environmental factors, including the diet. In pigs, we identified a haplotype of three SNP mutations in the stearoyl-coA desaturase (SCD) gene promoter ...

    Authors: Emma Solé, Rayner González-Prendes, Yelyzaveta Oliinychenko, Marc Tor, Roger Ros-Freixedes, Joan Estany and Ramona N. Pena
    Citation: BMC Genomics 2022 23:16
    Content type: Research Published on:

  35. Tungsten carbide (WC) and tungsten carbide cobalt (WC-Co) nanoparticles are of occupational health relevance because of the increasing usage in hard metal industries. Earlier studies showed an enhanced toxic p...

    Authors: Wibke Busch, Dana Kühnel, Kristin Schirmer and Stefan Scholz
    Citation: BMC Genomics 2010 11:65
    Content type: Research article Published on:

  36. Iron deficiency is a common childhood micronutrient deficiency that results in altered hippocampal function and cognitive disorders. However, little is known about the mechanisms through which neonatal iron de...

    Authors: Kyle M. Schachtschneider, Yingkai Liu, Laurie A. Rund, Ole Madsen, Rodney W. Johnson, Martien A. M. Groenen and Lawrence B. Schook
    Citation: BMC Genomics 2016 17:856
    Content type: Research article Published on:

  37. Lysosomes play important roles in multiple aspects of physiology, but the problem of how the transcription of lysosomal genes is coordinated remains incompletely understood. The goal of this study was to illum...

    Authors: Louise M Brignull, Zsolt Czimmerer, Hafida Saidi, Bence Daniel, Izabel Villela, Nathan W Bartlett, Sebastian L Johnston, Lisiane B Meira, Laszlo Nagy and Axel Nohturfft
    Citation: BMC Genomics 2013 14:853
    Content type: Research article Published on:

  38. In recent years, various types of cellular networks have penetrated biology and are nowadays used omnipresently for studying eukaryote and prokaryote organisms. Still, the relation and the biological overlap a...

    Authors: Ricardo de Matos Simoes, Matthias Dehmer and Frank Emmert-Streib
    Citation: BMC Genomics 2013 14:324
    Content type: Research article Published on:

  39. Spots in pierid butterflies and eyespots in nymphalid butterflies are likely non-homologous wing colour pattern elements, yet they share a few features in common. Both develop black scales that depend on the f...

    Authors: Jocelyn Liang Qi Wee, Suriya Narayanan Murugesan, Christopher W. Wheat and Antónia Monteiro
    Citation: BMC Genomics 2023 24:169
    Content type: Research Published on:

  41. The progress in mapping RNA-protein and RNA-RNA interactions at the transcriptome-wide level paves the way to decipher possible combinatorial patterns embedded in post-transcriptional regulation of gene expres...

    Authors: Gianluca Corrado, Toma Tebaldi, Giulio Bertamini, Fabrizio Costa, Alessandro Quattrone, Gabriella Viero and Andrea Passerini
    Citation: BMC Genomics 2014 15:304
    Content type: Methodology article Published on:

  43. Herbivorous insects can have a profound impact on plant growth performance. In some years, canopy damage in poplar plantations exceeds 50% of the total leaf surface, thereby possibly compromising carbon fixati...

    Authors: Niels A. Müller, Birgit Kersten, Matthias Fladung and Hilke Schroeder
    Citation: BMC Genomics 2019 20:673
    Content type: Research article Published on:

  44. Aggression is an evolutionarily conserved behavior critical for animal survival. In the fish Betta splendens, across different stages of fighting interactions, fighting opponents suffer from various stressors, es...

    Authors: Trieu-Duc Vu, Kenshiro Oshima, Kenya Matsumura, Yuki Iwasaki, Ming-Tzu Chiu, Masato Nikaido and Norihiro Okada
    Citation: BMC Genomics 2022 22(Suppl 5):920
    Content type: Research Published on:

    This article is part of a Supplement: Volume 22 Supplement 5

    The Correction to this article has been published in BMC Genomics 2022 23:464

  45. Identifying associations between genotypes and gene expression levels using microarrays has enabled systematic interrogation of regulatory variation underlying complex phenotypes. This approach has vast potent...

    Authors: Tomas Babak, Philip Garrett-Engele, Christopher D Armour, Christopher K Raymond, Mark P Keller, Ronghua Chen, Carol A Rohl, Jason M Johnson, Alan D Attie, Hunter B Fraser and Eric E Schadt
    Citation: BMC Genomics 2010 11:473
    Content type: Methodology article Published on:

  46. Trichophyton rubrum (T. rubrum) is an important model organism of dermatophytes, which are the most common fungal pathogens worldwide. Despite the severity and prevalence of the infection caused by these pathogen...

    Authors: Lingling Wang, Xingye Xu, Jian Yang, Lihong Chen, Bo Liu, Tao Liu and Qi Jin
    Citation: BMC Genomics 2018 19:933
    Content type: Research article Published on:

  48. Secretion stress is caused by compromised folding, modification or transport of proteins in the secretory pathway. In fungi, induction of genes in response to secretion stress is mediated mainly by the unfolde...

    Authors: Mikko Arvas, Tiina Pakula, Karin Lanthaler, Markku Saloheimo, Mari Valkonen, Tapani Suortti, Geoff Robson and Merja Penttilä
    Citation: BMC Genomics 2006 7:32
    Content type: Research article Published on:

  49. The promoter is a critical necessary transcriptional cis-regulatory element. In addition to its role as an assembly site for the basal transcriptional apparatus, the promoter plays a key part in mediating tempora...

    Authors: Qianqian Zhu and Marc S Halfon
    Citation: BMC Genomics 2009 10:9
    Content type: Research article Published on:

  50. Cassava is an important tropical root crop adapted to a wide range of environmental stimuli such as drought and acid soils. Nevertheless, it is an extremely cold-sensitive tropical species. Thus far, there is ...

    Authors: Dong An, Jun Yang and Peng Zhang
    Citation: BMC Genomics 2012 13:64
    Content type: Research article Published on:

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