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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. The lycophyte Selaginella moellendorffii is a member of one of the oldest lineages of vascular plants on Earth. Fossil records show that the lycophyte clade arose 400 million years ago, 150–200 million years earl...

    Authors: Jing-Ke Weng, Milos Tanurdzic and Clint Chapple
    Citation: BMC Genomics 2005 6:85
    Content type: Research article Published on:

  2. For Asian seabass (Lates calcarifer, Bloch 1790) cultured at sea cages various aquatic pathogens, complex environmental and stress factors are considered as leading causes of disease, causing tens of millions of ...

    Authors: Xueyan Shen, Yong Chao Niu, Joseph Angelo V. Uichanco, Norman Phua, Pranjali Bhandare, Natascha May Thevasagayam, Sai Rama Sridatta Prakki and László Orbán
    Citation: BMC Genomics 2023 24:449
    Content type: Research Published on:

  3. Alternative splicing (AS) regulation is extensive and shapes the functional complexity of higher organisms. However, the contribution of alternative splicing to fungal biology is not well studied.

    Authors: Lirong Jin, Guanglin Li, Dazhao Yu, Wei Huang, Chao Cheng, Shengjie Liao, Qijia Wu and Yi Zhang
    Citation: BMC Genomics 2017 18:130
    Content type: Research article Published on:

  4. Complex traits, which are under the influence of multiple and possibly interacting genes, have become a subject of new statistical methodological research. One of the greatest challenges facing human geneticis...

    Authors: Vessela N Kristensen, Anya Tsalenko, Jurgen Geisler, Anne Faldaas, Grethe Irene Grenaker, Ole Christian Lingjærde, Ståle Fjeldstad, Zohar Yakhini, Per Eystein Lønning and Anne-Lise Børresen-Dale
    Citation: BMC Genomics 2006 7:5
    Content type: Methodology article Published on:

  5. Because the gene expression patterns of nonobese hepatic steatosis in affected patients remain unclear, we sought to explore these patterns using an animal model of nonobese hepatic steatosis.

    Authors: Ming-Ling Chang, Chau-Ting Yeh, Jeng-Chang Chen, Chau-Chun Huang, Shi-Ming Lin, I-Shyan Sheen, Dar-In Tai, Chia-Ming Chu, Wei-Pin Lin, Ming-Yu Chang, Chun-Kai Liang, Cheng-Tang Chiu and Deng-Yn Lin
    Citation: BMC Genomics 2008 9:109
    Content type: Research article Published on:

  6. Mosquito saliva is a complex cocktail whose pharmacological properties play an essential role in blood feeding by counteracting host physiological response to tissue injury. Moreover, vector borne pathogens ar...

    Authors: Bruno Arcà, Fabrizio Lombardo, Claudio J. Struchiner and José M. C. Ribeiro
    Citation: BMC Genomics 2017 18:153
    Content type: Research article Published on:

  7. Argeia pugettensis is an isopod species that parasitizes other crustaceans. Its huge native geographic range spans the Pacific from China to California, but molecular data are available only for a handful of spec...

    Authors: Jianmei An, Wanrui Zheng, Jielong Liang, Qianqian Xi, Ruru Chen, Junli Jia, Xia Lu and Ivan Jakovlić
    Citation: BMC Genomics 2020 21:607
    Content type: Research article Published on:

  8. The increase in temperatures due to the current climate change dramatically affects crop cultivation, resulting in yield losses and altered fruit quality. Tomato is one of the most extensively grown and consum...

    Authors: Salvatore Graci, Riccardo Aiese Cigliano and Amalia Barone
    Citation: BMC Genomics 2024 25:509
    Content type: Research Published on:

  9. Marine bacteriophages play key roles in the community structure of microorganisms, biogeochemical cycles, and the mediation of genetic diversity through horizontal gene transfer. Recently, traditional isolatio...

    Authors: Wenjing Zhang, Yantao Liang, Kaiyang Zheng, Chengxiang Gu, Yundan Liu, Ziyue Wang, Xinran Zhang, Hongbing Shao, Yong Jiang, Cui Guo, Hui He, Hualong Wang, Yeong Yik Sung, Wen Jye Mok, Yuzhong Zhang, Andrew McMinn…
    Citation: BMC Genomics 2021 22:675
    Content type: Research Published on:

  10. T. fasciatus (Takifugu fasciatus) faces the same problem as most warm water fish: the water temperature falls far below the optimal growth temperature in winter, causing a massive death of T. fasciatus and large ...

    Authors: Xin Wen, Yadong Hu, Xinyu Zhang, Xiaozhen Wei, Tao Wang and Shaowu Yin
    Citation: BMC Genomics 2019 20:563
    Content type: Research article Published on:

  11. Non-coding RNAs (ncRNAs) draw much attention from studies widely in recent years because they play vital roles in life activities. As a good complement to wet experiment methods, computational prediction metho...

    Authors: Ning Ai, Yong Liang, Haoliang Yuan, Dong Ouyang, Shengli Xie and Xiaoying Liu
    Citation: BMC Genomics 2023 24:424
    Content type: Research Published on:

  12. Intestinal microbes play significant roles in fish and can be possibly used as probiotics in aquaculture. In our previous study, Flaviramulus ichthyoenteri Th78T, a novel species in the family Flavobacteriaceae, ...

    Authors: Yunhui Zhang, Jiwen Liu, Kaihao Tang, Min Yu, Tom Coenye and Xiao-Hua Zhang
    Citation: BMC Genomics 2015 16:38
    Content type: Research article Published on:

  13. Vitellogenin is a well established biomarker for estrogenic exposure in fish. However, effects on gonadal differentiation at concentrations of estrogen not sufficient to give rise to a measurable vitellogenin ...

    Authors: Lina Gunnarsson, Erik Kristiansson, Lars Förlin, Olle Nerman and D G Joakim Larsson
    Citation: BMC Genomics 2007 8:149
    Content type: Research article Published on:

  14. Cucurbita pepo is a member of the Cucurbitaceae family, the second- most important horticultural family in terms of economic importance after Solanaceae. The "summer squash" types, including Zucchini and Scallop,...

    Authors: Cristina Esteras, Pedro Gómez, Antonio J Monforte, José Blanca, Nelly Vicente-Dólera, Cristina Roig, Fernando Nuez and Belén Picó
    Citation: BMC Genomics 2012 13:80
    Content type: Research article Published on:

  15. Transcription is arrested in the late stage oocyte and therefore the maternal transcriptome stored in the oocyte provides nearly all the mRNA required for oocyte maturation, fertilization, and early cleavage o...

    Authors: Gregory M. Weber, Jill Birkett, Kyle Martin, Doug Dixon II, Guangtu Gao, Timothy D. Leeds, Roger L. Vallejo and Hao Ma
    Citation: BMC Genomics 2021 22:448
    Content type: Research article Published on:

  16. Rhazya stricta is native to arid regions in South Asia and the Middle East and is used extensively in folk medicine to treat a wide range of diseases. In addition to generating genomic resources for this medicina...

    Authors: Seongjun Park, Tracey A Ruhlman, Jamal SM Sabir, Mohammed HZ Mutwakil, Mohammed N Baeshen, Meshaal J Sabir, Nabih A Baeshen and Robert K Jansen
    Citation: BMC Genomics 2014 15:405
    Content type: Research article Published on:

  17. ATP-binding cassette (ABC) transporter proteins constitute a plant gene superfamily crucial for growth, development, and responses to environmental stresses. Despite their identification in various plants like...

    Authors: Xiaobing Kou, Zhen Zhao, Xinqi Xu, Chang Li, Juyou Wu and Shaoling Zhang
    Citation: BMC Genomics 2024 25:169
    Content type: Research Published on:

  18. Oxidative stress (OS) plays an essential role in chronic diseases such as colorectal cancer (CRC). In this study, we aimed to explore the relation between oxidative stress-related genes and CRC prognosis and t...

    Authors: Leilei Yang, Chengfeng Fang, Ruili Zhang and Shenkang Zhou
    Citation: BMC Genomics 2024 25:8
    Content type: Research Published on:

  19. Nucleomorphs are residual nuclei derived from eukaryotic endosymbionts in chlorarachniophyte and cryptophyte algae. The endosymbionts that gave rise to nucleomorphs and plastids in these two algal groups were ...

    Authors: Goro Tanifuji, Naoko T Onodera, Matthew W Brown, Bruce A Curtis, Andrew J Roger, Gane Ka-Shu Wong, Michael Melkonian and John M Archibald
    Citation: BMC Genomics 2014 15:374
    Content type: Research article Published on:

  20. Interactions between fish and pathogens, that may be harmless under natural conditions, often result in serious diseases in aquaculture systems. This is especially important due to the fact that the strains us...

    Authors: Silvia T Rodríguez-Ramilo, Miguel A Toro, Carmen Bouza, Miguel Hermida, Belén G Pardo, Santiago Cabaleiro, Paulino Martínez and Jesús Fernández
    Citation: BMC Genomics 2011 12:541
    Content type: Research article Published on:

  21. Genome mining tools have enabled us to predict biosynthetic gene clusters that might encode compounds with valuable functions for industrial and medical applications. With the continuously increasing number of...

    Authors: Martina Adamek, Mohammad Alanjary, Helena Sales-Ortells, Michael Goodfellow, Alan T. Bull, Anika Winkler, Daniel Wibberg, Jörn Kalinowski and Nadine Ziemert
    Citation: BMC Genomics 2018 19:426
    Content type: Research article Published on:

  22. Aneuploidy, or abnormal chromosome numbers, severely alters cell physiology and is widespread in cancers and other pathologies. Using model cell lines engineered to carry one or more extra chromosomes, it has ...

    Authors: Milena Dürrbaum, Christine Kruse, K. Julia Nieken, Bianca Habermann and Zuzana Storchová
    Citation: BMC Genomics 2018 19:197
    Content type: Research article Published on:

  23. Cleft lip (CL), one of the most common congenital birth defects, shows considerable geographic and ethnic variation, with contribution of both genetic and environmental factors. Mouse genetic studies have iden...

    Authors: Akiko Suzuki, Hiroki Yoshioka, Dima Summakia, Neha G. Desai, Goo Jun, Peilin Jia, David S. Loose, Kenichi Ogata, Mona V. Gajera, Zhongming Zhao and Junichi Iwata
    Citation: BMC Genomics 2019 20:852
    Content type: Research article Published on:

  24. Machine learning can effectively nominate novel genes for various research purposes in the laboratory. On a genome-wide scale, we implemented multiple databases and algorithms to predict and prioritize the human

    Authors: Masoud Arabfard, Mina Ohadi, Vahid Rezaei Tabar, Ahmad Delbari and Kaveh Kavousi
    Citation: BMC Genomics 2019 20:832
    Content type: Research article Published on:

  25. Aohan fine wool sheep (AFWS) is a historically bred fine wool sheep, cultivated in China. The wool has excellent quality and good textile performance. Investigating the molecular mechanisms that regulate wool ...

    Authors: Ranran Zhao, Nan Liu, Fuhui Han, Hegang Li, Jifeng Liu, Lanlan Li, Guoyi Wang and Jianning He
    Citation: BMC Genomics 2020 21:187
    Content type: Research article Published on:

  26. The Lolium-Festuca complex incorporates species from the Lolium genera and the broad leaf fescues, both belonging to the subfamily Pooideae. This subfamily also includes wheat, barley, oat and rye, making it extr...

    Authors: Adrian Czaban, Sapna Sharma, Stephen L Byrne, Manuel Spannagl, Klaus FX Mayer and Torben Asp
    Citation: BMC Genomics 2015 16:249
    Content type: Research Article Published on:

  27. A better understanding of the genetic architecture underlying complex traits (e.g., the distribution of causal variants and their effects) may aid in the genomic prediction. Here, we hypothesized that the geno...

    Authors: Lingzhao Fang, Goutam Sahana, Peipei Ma, Guosheng Su, Ying Yu, Shengli Zhang, Mogens Sandø Lund and Peter Sørensen
    Citation: BMC Genomics 2017 18:604
    Content type: Research article Published on:

  28. Eucalyptus species and interspecific hybrids exhibit valuable growth and wood properties that make them a highly desirable commodity. However, these trees are challenged by a wide array of biot...

    Authors: Ronishree Mangwanda, Alexander A Myburg and Sanushka Naidoo
    Citation: BMC Genomics 2015 16:319
    Content type: Research article Published on:

  29. A subset of breast cancer cells displays increased ability to self-renew and reproduce breast cancer heterogeneity. The characterization of these so-called putative breast tumor-initiating cells (BT-ICs) may o...

    Authors: Maria Ouzounova, Tri Vuong, Pierre-Benoit Ancey, Mylène Ferrand, Geoffroy Durand, Florence Le-Calvez Kelm, Carlo Croce, Chantal Matar, Zdenko Herceg and Hector Hernandez-Vargas
    Citation: BMC Genomics 2013 14:139
    Content type: Research article Published on:

  30. Bacteria of the genus Arthrobacter are ubiquitous in soil environments and can be considered as true survivalists. Arthrobacter sp. strain Rue61a is an isolate from sewage sludge able to utilize quinaldine (2-met...

    Authors: Heiko Niewerth, Jörg Schuldes, Katja Parschat, Patrick Kiefer, Julia A Vorholt, Rolf Daniel and Susanne Fetzner
    Citation: BMC Genomics 2012 13:534
    Content type: Research article Published on:

  31. Sepsis is a life-threatening syndrome resulting from immune system dysfunction that is caused by infection. It is of great importance to analyze the immune characteristics of sepsis, identify the key immune sy...

    Authors: Haiyan Xue, Ziyan Xiao, Xiujuan Zhao, Shu Li, Zhenzhou Wang, Jie Zhao and Fengxue Zhu
    Citation: BMC Genomics 2023 24:794
    Content type: Research Published on:

  32. The cynomolgus monkey (Macaca fascicularis) is one of the most widely used surrogate animal models for an increasing number of human diseases and vaccines, especially immune-system-related ones. Towards a better ...

    Authors: Wei-Hua Chen, Xue-Xia Wang, Wei Lin, Xiao-Wei He, Zhen-Qiang Wu, Ying Lin, Song-Nian Hu and Xiao-Ning Wang
    Citation: BMC Genomics 2006 7:82
    Content type: Research article Published on:

  35. Penicillium chrysogenum is a filamentous fungus that is employed as an industrial producer of β–lactams. The high β–lactam titers of current strains is the result of a classical strain...

    Authors: Oleksandr V. Salo, Marco Ries, Marnix H. Medema, Peter P. Lankhorst, Rob J. Vreeken, Roel A. L. Bovenberg and Arnold J. M. Driessen
    Citation: BMC Genomics 2015 16:937
    Content type: Research article Published on:

  36. The Mozambique tilapia Oreochromis mossambicus has the ability to adapt to a broad range of environmental salinities and has long been used for investigating iono-osmoregulation. However, to date most studies hav...

    Authors: Siew Hong Lam, Eei Yin Lui, Zhengjun Li, Shaojiang Cai, Wing-Kin Sung, Sinnakaruppan Mathavan, Toong Jin Lam and Yuen Kwong Ip
    Citation: BMC Genomics 2014 15:921
    Content type: Research article Published on:

  37. Genome-wide saturation mutagenesis and subsequent phenotype-driven screening has been central to a comprehensive understanding of complex biological processes in classical model organisms such as flies, nemato...

    Authors: Masahiro Tokunaga, Chikara Kokubu, Yusuke Maeda, Jun Sese, Kyoji Horie, Nakaba Sugimoto, Taroh Kinoshita, Kosuke Yusa and Junji Takeda
    Citation: BMC Genomics 2014 15:1016
    Content type: Research article Published on:

  38. Cashmere is a keratinized product derived from the secondary hair follicles (SHFs) of cashmere goat skins. The cashmere fiber stops growing following the transition from the actively proliferating anagen stage...

    Authors: Guangxian Zhou, Danju Kang, Sen Ma, Xingtao Wang, Ye Gao, Yuxin Yang, Xiaolong Wang and Yulin Chen
    Citation: BMC Genomics 2018 19:222
    Content type: Research article Published on:

  39. Xanthomonas translucens pathovars differ in their individual host ranges among Poaceae. As the causal agent of bacterial wilt in Italian ryegrass (Lolium multiflorum Lam.), X. transluc...

    Authors: Lena Hersemann, Daniel Wibberg, Jochen Blom, Alexander Goesmann, Franco Widmer, Frank-Jörg Vorhölter and Roland Kölliker
    Citation: BMC Genomics 2017 18:35
    Content type: Research Article Published on:

  40. Degradation is essential for RNA maturation, turnover, and quality control. RNA degradome sequencing that integrates a modified 5′-rapid amplification of cDNA ends protocol with next-generation sequencing tech...

    Authors: Cheng-Yu Hou, Ming-Tsung Wu, Shin-Hua Lu, Yue-Ie Hsing and Ho-Ming Chen
    Citation: BMC Genomics 2014 15:15
    Content type: Research article Published on:

  41. Drug treatments and vaccine designs against the opportunistic human pathogen Pseudomonas aeruginosa have multiple issues, all associated with the diverse genetic traits present in this pathogen, ranging from mult...

    Authors: Jeanneth Mosquera-Rendón, Ana M. Rada-Bravo, Sonia Cárdenas-Brito, Mauricio Corredor, Eliana Restrepo-Pineda and Alfonso Benítez-Páez
    Citation: BMC Genomics 2016 17:45
    Content type: Research article Published on:

  42. Food security is important for the ever-growing global population. Soybean, Glycine max (L.) Merr., is cultivated worldwide providing a key source of food, protein and oil. Hence, it is imperative to maintain or ...

    Authors: Chade Li, Wenyan Nong, Delbert Almerick T. Boncan, Wai Lok So, Ho Yin Yip, Thomas Swale, Qi Jia, Ignacio G. Vicentin, Gyuhwa Chung, William G. Bendena, Jacky C. K. Ngo, Ting Fung Chan, Hon-Ming Lam and Jerome H. L. Hui
    Citation: BMC Genomics 2024 25:327
    Content type: Research Published on:

  43. UnTranslated Regions (UTRs) of mRNAs contain regulatory elements for various aspects of mRNA metabolism, such as mRNA localization, translation, and mRNA stability. Several RNA stem-loop structures in UTRs hav...

    Authors: Mugdha Khaladkar, Jianghui Liu, Dongrong Wen, Jason TL Wang and Bin Tian
    Citation: BMC Genomics 2008 9:189
    Content type: Research article Published on:

  45. ADP-ribosylation is an enzyme-catalyzed posttranslational protein modification in which mono(ADP-ribosyl)transferases (mARTs) and poly(ADP-ribosyl)transferases (pARTs) transfer the ADP-ribose moiety from NAD o...

    Authors: Helge Otto, Pedro A Reche, Fernando Bazan, Katharina Dittmar, Friedrich Haag and Friedrich Koch-Nolte
    Citation: BMC Genomics 2005 6:139
    Content type: Research article Published on:

  46. Climatic and edaphic conditions over geological timescales have generated enormous diversity of adaptive traits and high speciation within the genus Eucalyptus (L. Hér.). Eucalypt species occur from high rainfall...

    Authors: Antanas V. Spokevicius, Josquin Tibbits, Philippe Rigault, Marc-Alexandre Nolin, Caroline Müller and Andrew Merchant
    Citation: BMC Genomics 2017 18:284
    Content type: Research article Published on:

  47. Algorithms designed to predict protein disorder play an important role in structural and functional genomics, as disordered regions have been reported to participate in important cellular processes. Consequent...

    Authors: Fernanda L Sirota, Hong-Sain Ooi, Tobias Gattermayer, Georg Schneider, Frank Eisenhaber and Sebastian Maurer-Stroh
    Citation: BMC Genomics 2010 11(Suppl 1):S15
    Content type: Research Published on:

    This article is part of a Supplement: Volume 11 Supplement 1

  48. Snake venom is shaped by the ecology and evolution of venomous species, and signals of positive selection in toxins have been consistently documented, reflecting the role of venoms as an ecologically critical ...

    Authors: Mark J Margres, Karalyn Aronow, Jacob Loyacano and Darin R Rokyta
    Citation: BMC Genomics 2013 14:531
    Content type: Research article Published on:

  50. Zinc finger protein 143(ZNF143), a member of the Krüppel C2H2-type zinc finger protein family, is strongly associated with cell cycle regulation and cancer development. A recent study suggested that ZNF143 pla...

    Authors: Bingyu Ye, Wenlong Shen, Chunyan Zhang, Mengli Yu, Xinru Ding, Man Yin, Yahao Wang, Xinjie Guo, Ge Bai, Kailin Lin, Shu Shi, Ping Li, Yan Zhang, Guoying Yu and Zhihu Zhao
    Citation: BMC Genomics 2022 23:483
    Content type: Research Published on:

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