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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  2. The bite of spiders belonging to the genus Loxosceles can induce a variety of clinical symptoms, including dermonecrosis, thrombosis, vascular leakage, haemolysis, and persistent inflammation. In order to examine...

    Authors: Matheus de F Fernandes-Pedrosa, Inácio de LM Junqueira-de-Azevedo, Rute M Gonçalves-de-Andrade, Leonardo S Kobashi, Diego D Almeida, Paulo L Ho and Denise V Tambourgi
    Citation: BMC Genomics 2008 9:279
    Content type: Research article Published on:

  3. Sperm epigenetics is an emerging area of study supported by observations reporting that abnormal sperm DNA methylation patterns are associated with infertility. Here, we explore cytosine-guanine dinucleotides ...

    Authors: Emanuele Capra, Barbara Lazzari, Federica Turri, Paola Cremonesi, Antônia Moemia Rodrigues Portela, Paolo Ajmone-Marsan, Alessandra Stella and Flavia Pizzi
    Citation: BMC Genomics 2019 20:940
    Content type: Research article Published on:

  4. RNA-seq emerges as a valuable method for clinical genetics. The transcriptome is “dynamic” and tissue-specific, but typically the probed tissues to analyze (TA) are different from the tissue of interest (TI) b...

    Authors: Akhil Velluva, Maximillian Radtke, Susanne Horn, Bernt Popp, Konrad Platzer, Erind Gjermeni, Chen-Ching Lin, Johannes R. Lemke, Antje Garten, Torsten Schöneberg, Matthias Blüher, Rami Abou Jamra and Diana Le Duc
    Citation: BMC Genomics 2021 22:802
    Content type: Software Published on:

  5. Domestication modifies the genomic variation of species. Quantifying this variation provides insights into the domestication process, facilitates the management of resources used by breeders and germplasm cent...

    Authors: José Blanca, Javier Montero-Pau, Christopher Sauvage, Guillaume Bauchet, Eudald Illa, María José Díez, David Francis, Mathilde Causse, Esther van der Knaap and Joaquín Cañizares
    Citation: BMC Genomics 2015 16:257
    Content type: Research article Published on:

  6. Theoretical proteome analysis, generated by plotting theoretical isoelectric points (pI) against molecular masses of all proteins encoded by the genome show a multimodal distribution for pI. This multimodal di...

    Authors: Soumyadeep Nandi, Nipun Mehra, Andrew M Lynn and Alok Bhattacharya
    Citation: BMC Genomics 2005 6:116
    Content type: Research article Published on:

  7. Xanthomonas fragariae (Xf) is a bacterial strawberry pathogen and an A2 quarantine organism on strawberry planting stock in the EU. It is taxonomically and metabolically distinct within the genus Xanthomonas, and...

    Authors: Joachim Vandroemme, Bart Cottyn, Steve Baeyen, Paul De Vos and Martine Maes
    Citation: BMC Genomics 2013 14:829
    Content type: Research article Published on:

  9. Bovine viral diarrhea virus (BVDV) is an economically important viral pathogen of domestic and wild ruminants. Apart from cattle, small ruminants (goats and sheep) are also the susceptible hosts for BVDV. BVDV...

    Authors: Wenliang Li, Li Mao, Xin Shu, Runxia Liu, Fei Hao, Jizong Li, Maojun Liu, Leilei Yang, Wenwen Zhang, Min Sun, Chunyan Zhong and Jieyuan Jiang
    Citation: BMC Genomics 2019 20:516
    Content type: Research article Published on:

  10. Many large-scale studies analyzed high-throughput genomic data to identify altered pathways essential to the development and progression of specific types of cancer. However, no previous study has been extende...

    Authors: Tae Hyun Hwang, Gowtham Atluri, Rui Kuang, Vipin Kumar, Timothy Starr, Kevin AT Silverstein, Peter M Haverty, Zemin Zhang and Jinfeng Liu
    Citation: BMC Genomics 2013 14:440
    Content type: Research article Published on:

  11. Volvox carteri (V. carteri) is a multicellular green alga used as model system for the evolution of multicellularity. So far, the contribution of small RNA pathways to these phenomena ...

    Authors: Anne Dueck, Maurits Evers, Stefan R. Henz, Katharina Unger, Norbert Eichner, Rainer Merkl, Eugene Berezikov, Julia C. Engelmann, Detlef Weigel, Stephan Wenzl and Gunter Meister
    Citation: BMC Genomics 2016 17:853
    Content type: Research article Published on:

  12. Haemophilus parasuis is the etiologic agent of Glässer’s disease in pigs and causes devastating losses to the farming industry. Whilst some hyper-virulent isolates have been described, the relationship between ge...

    Authors: Kate J Howell, Lucy A Weinert, Roy R Chaudhuri, Shi-Lu Luan, Sarah E Peters, Jukka Corander, David Harris, Øystein Angen, Virginia Aragon, Albert Bensaid, Susanna M Williamson, Julian Parkhill, Paul R Langford, Andrew N Rycroft, Brendan W Wren, Matthew T G Holden…
    Citation: BMC Genomics 2014 15:1179
    Content type: Research article Published on:

  13. Castor oil is the only commercial source of hydroxy fatty acid that has industrial value. The production of castor oil is hampered by the presence of the toxin ricin in its seed. Lesquerella seed also accumula...

    Authors: Hyun Uk Kim and Grace Qianhong Chen
    Citation: BMC Genomics 2015 16:230
    Content type: Research article Published on:

  14. Copper is essential for the survival of aerobic organisms. If copper is not properly regulated in the body however, it can be extremely cytotoxic and genetic mutations that compromise copper homeostasis result...

    Authors: Ulrich Schlecht, Sundari Suresh, Weihong Xu, Ana Maria Aparicio, Angela Chu, Michael J Proctor, Ronald W Davis, Curt Scharfe and Robert P St Onge
    Citation: BMC Genomics 2014 15:263
    Content type: Research article Published on:

  15. Structural homology modeling supported by bioinformatics analysis plays a key role in uncovering new molecular interactions within gene regulatory networks. Here, we have applied this powerful approach to anal...

    Authors: Nikita V. Ivanisenko, Jörn H. Buchbinder, Johannes Espe, Max Richter, Miriam Bollmann, Laura K. Hillert, Vladimir A. Ivanisenko and Inna N. Lavrik
    Citation: BMC Genomics 2019 20(Suppl 3):293
    Content type: Research Published on:

    This article is part of a Supplement: Volume 20 Supplement 3

  16. Pectobacterium carotovorum subsp. brasiliense is a broad host range bacterial pathogen, which causes blackleg of potatoes and bacterial soft rot of vegetables worldwide. Production of plant cell wall degrading en...

    Authors: Lei Li, Lifang Yuan, Yanxia Shi, Xuewen Xie, Ali Chai, Qi Wang and Baoju Li
    Citation: BMC Genomics 2019 20:486
    Content type: Research article Published on:

  17. The fasciclin-like arabinogalactan proteins (FLAs) belong to the arabinogalactan protein (AGP) superfamily and are known to play different physiological roles in plants. This class of proteins was shown to par...

    Authors: Gea Guerriero, Lauralie Mangeot-Peter, Sylvain Legay, Marc Behr, Stanley Lutts, Khawar Sohail Siddiqui and Jean-Francois Hausman
    Citation: BMC Genomics 2017 18:741
    Content type: Research article Published on:

  18. The white-rot fungi in the genus Ganoderma interact with both living and dead angiosperm tree hosts. Two Ganoderma species, a North American taxon, G. zonatum and an Asian taxon, G. boninense, have primarily been...

    Authors: Braham Dhillon, Richard C. Hamelin and Jeffrey A. Rollins
    Citation: BMC Genomics 2021 22:326
    Content type: Research article Published on:

  19. Puccinia striiformis f. sp. tritici is a fungal pathogen causing stripe rust, one of the most important wheat diseases worldwide. The fungus is strictly biotrophic and thus, completely dependent on living host ce...

    Authors: Xiaojie Wang, Chunlei Tang, Gang Zhang, Yingchun Li, Chenfang Wang, Bo Liu, Zhipeng Qu, Jie Zhao, Qingmei Han, Lili Huang, Xianming Chen and Zhensheng Kang
    Citation: BMC Genomics 2009 10:289
    Content type: Research article Published on:

    The Erratum to this article has been published in BMC Genomics 2013 14:671

  20. Zebrafish have practical features that make them a useful model for higher-throughput tests of gene function using CRISPR/Cas9 editing to create ‘knockout’ models. In particular, the use of G0 mosaic mutants has ...

    Authors: José M. Uribe-Salazar, Gulhan Kaya, Aadithya Sekar, KaeChandra Weyenberg, Cole Ingamells and Megan Y. Dennis
    Citation: BMC Genomics 2022 23:12
    Content type: Research Published on:

  21. Rate-limiting enzymes, because of their relatively low velocity, are believed to influence metabolic flux in pathways. To investigate their regulatory role in metabolic networks, we look at the global organiza...

    Authors: Min Zhao and Hong Qu
    Citation: BMC Genomics 2009 10(Suppl 3):S31
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 10 Supplement 3

  22. The chicken (Gallus gallus) is an important model organism that bridges the evolutionary gap between mammals and other vertebrates. Copy number variations (CNVs) are a form of genomic structural variation widely ...

    Authors: Hui Zhang, Zhi-Qiang Du, Jia-Qiang Dong, Hai-Xia Wang, Hong-Yan Shi, Ning Wang, Shou-Zhi Wang and Hui Li
    Citation: BMC Genomics 2014 15:517
    Content type: Research article Published on:

  23. Azadirachtin, one of the most promising botanical insecticides, has been widely used for pest control. Azadirachtin induces apoptosis in insect cell lines, including Sf9, SL-1 and BTI-Tn-5B1–4. Mitochondrial a...

    Authors: Benshui Shu, Jianwen Jia, Jingjing Zhang, Veeran Sethuraman, Xin Yi and Guohua Zhong
    Citation: BMC Genomics 2018 19:413
    Content type: Research article Published on:

  24. A large, multi-province outbreak of listeriosis associated with ready-to-eat meat products contaminated with Listeria monocytogenes serotype 1/2a occurred in Canada in 2008. Subtyping of outbreak-associated isola...

    Authors: Matthew W Gilmour, Morag Graham, Gary Van Domselaar, Shaun Tyler, Heather Kent, Keri M Trout-Yakel, Oscar Larios, Vanessa Allen, Barbara Lee and Celine Nadon
    Citation: BMC Genomics 2010 11:120
    Content type: Research article Published on:

  25. Compensatory growth (CG) is an accelerated growth phenomenon observed in animals upon re-alimentation following a period of dietary restriction. It is typically utilised in livestock systems to reduce feed cos...

    Authors: Kate Keogh, David A. Kenny, Paul Cormican, Alan K. Kelly and Sinead M. Waters
    Citation: BMC Genomics 2016 17:244
    Content type: Research article Published on:

  26. Grain weight and grain shape are important agronomic traits that affect the grain yield potential and grain quality of rice. Both grain weight and grain shape are controlled by multiple genes. The 3,000 Rice G...

    Authors: Yanan Niu, Tianxiao Chen, Chunchao Wang, Kai Chen, Congcong Shen, Huizhen Chen, Shuangbing Zhu, Zhichao Wu, Tianqing Zheng, Fan Zhang and Jianlong Xu
    Citation: BMC Genomics 2021 22:602
    Content type: Research article Published on:

  27. Scenedesmus obliquus belongs to green microalgae and is widely used in aquaculture as feed, which is also explored for lipid production and bioremediation. However, genomic studies of this microalga have been ver...

    Authors: Bai-Ling Chen, Wuttichai Mhuantong, Shih-Hsin Ho, Jo-Shu Chang, Xin-Qing Zhao and Feng-Wu Bai
    Citation: BMC Genomics 2020 21:743
    Content type: Research article Published on:

  28. Sucrose nonfermenting-1 (SNF1)-related protein kinases (SnRKs) play important roles in regulating metabolism and stress responses in plants, providing a conduit for crosstalk between metabolic and stress signa...

    Authors: Zhiwei Chen, Longhua Zhou, Panpan Jiang, Ruiju Lu, Nigel G. Halford and Chenghong Liu
    Citation: BMC Genomics 2021 22:300
    Content type: Research article Published on:

  29. In recent years, the damage caused by bacterial pathogens to major crops has been increasing worldwide. Pseudomonas syringae is a widespread bacterial species that infects almost all major crops. Different P. syr...

    Authors: Rinat I. Sultanov, Georgij P. Arapidi, Svetlana V. Vinogradova, Vadim M. Govorun, Duglas G. Luster and Alexander N. Ignatov
    Citation: BMC Genomics 2016 17(Suppl 14):1010
    Content type: Research Published on:

    This article is part of a Supplement: Volume 17 Supplement 14

  30. Bacterial repetitive extragenic palindromes (REPs) compose a distinct group of genomic repeats. They usually occur in high abundance (>100 copies/genome) and are often arranged in composite repetitive structur...

    Authors: Jaroslav Nunvar, Tereza Huckova and Irena Licha
    Citation: BMC Genomics 2010 11:44
    Content type: Research article Published on:

  31. Ferula L. is one of the largest and most taxonomically complicated genera as well as being an important medicinal plant resource in the family Apiaceae. To investigate the plastome features and phylogenetic relat...

    Authors: Lei Yang, Ozodbek Abduraimov, Komiljon Tojibaev, Khabibullo Shomurodov, Yuan-Ming Zhang and Wen-Jun Li
    Citation: BMC Genomics 2022 23:643
    Content type: Research Published on:

  32. Sogatella furcifera is a migratory pest that damages rice plants and causes severe economic losses. Due to its ability to annually migrate long distances, S. furcifera has emerged as a major pest of rice in sever...

    Authors: Zhen Zeng, Yating Fu, Dongyang Guo, Yuxuan Wu, Olugbenga Emmanuel Ajayi and Qingfa Wu
    Citation: BMC Genomics 2018 19:688
    Content type: Research article Published on:

  33. Doubly Uniparental Inheritance (DUI) is a fascinating exception to matrilinear inheritance of mitochondrial DNA (mtDNA). Species with DUI are characterized by two distinct mtDNAs that are inherited either thro...

    Authors: Marco Passamonti, Andrea Ricci, Liliana Milani and Fabrizio Ghiselli
    Citation: BMC Genomics 2011 12:442
    Content type: Research article Published on:

  34. All crustaceans periodically moult to renew their exoskeleton. In krill this involves partial digestion and resorption of the old exoskeleton and synthesis of new cuticle. Molecular events that underlie the mo...

    Authors: Paul J Seear, Geraint A Tarling, Gavin Burns, William P Goodall-Copestake, Edward Gaten, Özge Özkaya and Ezio Rosato
    Citation: BMC Genomics 2010 11:582
    Content type: Research article Published on:

  35. Swine brucellosis caused by B. suis biovar 2 is an emergent disease in domestic pigs in Europe. The emergence of this pathogen has been linked to the increase of extensive pig farms and the high density of infect...

    Authors: Ana Cristina Ferreira, Rogério Tenreiro, Maria Inácia Corrêa de Sá and Ricardo Dias
    Citation: BMC Genomics 2017 18:726
    Content type: Research article Published on:

  36. Lysine 2-hydroxyisobutyrylation (Khib) is a novel and conserved post-translational modification (PTM). Frankliniella occidentalis are economically important agricultural pests globally and also notorious for vect...

    Authors: Chengying Ding, Liyun Song, Ying Li, Lili Shen, Dongyang Liu, Fenglong Wang, Zhonglong Lin and Jinguang Yang
    Citation: BMC Genomics 2022 23:621
    Content type: Research Published on:

  37. Anopheles mosquitoes are efficient vectors of human malaria, but it is unknown why they do not transmit viruses as well as Aedes and Culex mosquitoes. The only arbovirus known to be consistently transmitted by An...

    Authors: Guillaume Carissimo, Adrien Pain, Eugeni Belda and Kenneth D. Vernick
    Citation: BMC Genomics 2018 19:526
    Content type: Research article Published on:

  39. Root systems are critical for plant growth and development. The Casparian strip in root systems is involved in stress resistance and maintaining homeostasis. Casparian strip membrane domain proteins (CASPs) ar...

    Authors: Xiaoyang Wang, Yuanming Zhang, Liyuan Wang, Zhaoe Pan, Shoupu He, Qiong Gao, Baojun Chen, Wenfang Gong and Xiongming Du
    Citation: BMC Genomics 2020 21:340
    Content type: Research article Published on:

  40. Chimerism is the phenomenon when several genotypes coexist in a single individual. Used to understand plant ontogenesis they also have been valorised through new cultivar breeding. Viticulture has been taking ...

    Authors: V. Sichel, G. Sarah, N. Girollet, V. Laucou, C. Roux, M. Roques, P. Mournet, L. Le Cunff, P.F. Bert, P. This and T. Lacombe
    Citation: BMC Genomics 2023 24:396
    Content type: Research article Published on:

  42. Soybean is a major source of oil and protein in the human diet and in animal feed. However, as soybean is deficient in sulfur-containing amino acids, its nutritional value is limited. Increasing sulfate assimi...

    Authors: Yiqiong Ding, Xiaoqiong Zhou, Li Zuo, Hui Wang and Deyue Yu
    Citation: BMC Genomics 2016 17:373
    Content type: Research article Published on:

  43. Long non-coding RNAs (lncRNAs) have been found to play a vital role in several gene regulatory networks involved in the various biological processes in plants related to stress response. However, systematic an...

    Authors: Liang Chen, Shilai Shi, Ninfei Jiang, Hira Khanzada, Ghulam Mustafa Wassan, Changlan Zhu, Xiaosong Peng, Jie Xu, Yujin Chen, Qiuying Yu, Xiaopeng He, Junru Fu, Xiaorong Chen, Lifang Hu, Linjuan Ouyang, Xiaotang Sun…
    Citation: BMC Genomics 2018 19:460
    Content type: Research article Published on:

  44. MicroRNAs (miRNAs) are a family of short non-coding RNA molecules and play important roles in various biological processes. However, knowledge of the expression profiles and function of miRNAs on the regulatio...

    Authors: Xin Liu, Yuehua Zhu, Siyuan Zhan, Tao Zhong, Jiazhong Guo, Jiaxue Cao, Li Li, Hongping Zhang and Linjie Wang
    Citation: BMC Genomics 2022 23:186
    Content type: Research Published on:

  45. The fungivorus nematode, Aphelenchus avenae is widespread in soil and is found in association with decaying plant material. This nematode is also found in association with plants but its ability to cause plant di...

    Authors: Nurul Karim, John T Jones, Hiroaki Okada and Taisei Kikuchi
    Citation: BMC Genomics 2009 10:525
    Content type: Research article Published on:

  46. Ammonium is an important raw material for biomolecules and life activities, and the toxicity of ammonium is also an important ecological and agricultural issue. Ammonium toxicity in yeast has only recently bee...

    Authors: Wenhao Fu, Xiuling Cao, Tingting An, Huihui Zhao, Jie Zhang, Danqi Li, Xuejiao Jin and Beidong Liu
    Citation: BMC Genomics 2022 23:514
    Content type: Research Published on:

  47. Microsporidia are highly specialized, parasitic fungi that infect a wide range of eukaryotic hosts from all major taxa. Infections cause a variety of damaging effects on host physiology from increased stress t...

    Authors: Jordan D. Poley, Ben J. G. Sutherland, Mark D. Fast, Ben F. Koop and Simon R. M. Jones
    Citation: BMC Genomics 2017 18:630
    Content type: Research article Published on:

  48. Astaxanthin is a potent antioxidant with increasing biotechnological interest. In Xanthophyllomyces dendrorhous, a natural source of this pigment, carotenogenesis is a complex process regulated through several me...

    Authors: Pilar Martinez-Moya, Karsten Niehaus, Jennifer Alcaíno, Marcelo Baeza and Víctor Cifuentes
    Citation: BMC Genomics 2015 16:289
    Content type: Research article Published on:

  50. To investigate whether copy number variations (CNVs) are implicated in molecular mechanisms underlying primary open-angle glaucoma (POAG), we used genotype data of POAG individuals and healthy controls from tw...

    Authors: Valeria Lo Faro, Jacoline B. ten Brink, Harold Snieder, Nomdo M. Jansonius and Arthur A. Bergen
    Citation: BMC Genomics 2021 22:590
    Content type: Research Published on:

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