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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 19 of 128

  2. Transcription initiation regulation is mediated by sequence-specific interactions between DNA-binding proteins (transcription factors) and cis-elements, where BRE, TATA, INR, DPE and MTE motifs constitute cano...

    Authors: Sarah Mwangi, Geoffrey Attardo, Yutaka Suzuki, Serap Aksoy and Alan Christoffels
    Citation: BMC Genomics 2015 16:722
    Content type: Research article Published on:

  3. Imprinted genes have been extensively documented in eutherian mammals and found to exhibit significant interspecific variation in the suites of genes that are imprinted and in their regulation between tissues ...

    Authors: Kory C Douglas, Xu Wang, Madhuri Jasti, Abigail Wolff, John L VandeBerg, Andrew G Clark and Paul B Samollow
    Citation: BMC Genomics 2014 15:89
    Content type: Research article Published on:

  4. Traditionally, housekeeping and tissue specific genes have been classified using direct assay of mRNA presence across different tissues, but these experiments are costly and the results not easy to compare and...

    Authors: Luna De Ferrari and Stuart Aitken
    Citation: BMC Genomics 2006 7:277
    Content type: Research article Published on:

  5. Night-break (NB) has been proven to repress flowering of short-day plants (SDPs). Long-noncoding RNAs (lncRNAs) play key roles in plant flowering. However, investigation of the relationship between lncRNAs and...

    Authors: Qi Wu, Yiming Luo, Xiaoyong Wu, Xue Bai, Xueling Ye, Changying Liu, Yan Wan, Dabing Xiang, Qiang Li, Liang Zou and Gang Zhao
    Citation: BMC Genomics 2021 22:284
    Content type: Research Published on:

  6. The cancer stem cell (CSC) hypothesis proposes that a population of tumor cells bearing stem cell properties is responsible for the origin and maintenance of tumors. Normal and cancer stem cells possess the ab...

    Authors: Maria Ana Duhagon, Elaine M Hurt, Jose R Sotelo-Silveira, Xiaohu Zhang and William L Farrar
    Citation: BMC Genomics 2010 11:324
    Content type: Research article Published on:

  7. Previous molecular genetic studies of physiology and pigmentation of sheep skin have focused primarily on a limited number of genes and proteins. To identify additional genes that may play important roles in c...

    Authors: Ruiwen Fan, Jianshan Xie, Junming Bai, Haidong Wang, Xue Tian, Rui Bai, Xiaoyun Jia, Lei Yang, Yunfei Song, Muren Herrid, Wenjun Gao, Xiaoyan He, Jianbo Yao, George W Smith and Changsheng Dong
    Citation: BMC Genomics 2013 14:389
    Content type: Research article Published on:

  8. The ability to form adventitious roots (AR) is an economically important trait that is lost during the juvenile-to-mature phase change in woody plants. Auxin treatment, which generally promotes rooting in juve...

    Authors: Mohamad Abu-Abied, David Szwerdszarf, Inna Mordehaev, Yossi Yaniv, Saar Levinkron, Mor Rubinstein, Joseph Riov, Ron Ophir and Einat Sadot
    Citation: BMC Genomics 2014 15:826
    Content type: Research article Published on:

  9. The ribosome is a central player in the translation system, which in mammals consists of four RNA species and 79 ribosomal proteins (RPs). The control mechanisms of gene expression and the functions of RPs are...

    Authors: Kyota Ishii, Takanori Washio, Tamayo Uechi, Maki Yoshihama, Naoya Kenmochi and Masaru Tomita
    Citation: BMC Genomics 2006 7:37
    Content type: Research article Published on:

  10. Differential gene expression specifies the highly diverse cell types that constitute the nervous system. With its sequenced genome and simple, well-defined neuroanatomy, the nematode C. elegans is a useful model ...

    Authors: Rebecca M Fox, Stephen E Von Stetina, Susan J Barlow, Christian Shaffer, Kellen L Olszewski, Jason H Moore, Denis Dupuy, Marc Vidal and David M Miller III
    Citation: BMC Genomics 2005 6:42
    Content type: Methodology article Published on:

  11. Chrysanthemum morifolium is one of the most important global cut flower and pot plants, and has been cultivated worldwide. However, limited genomic resources are available and the mole...

    Authors: Hua Liu, Ming Sun, Dongliang Du, Huitang Pan, Tangren Cheng, Jia Wang, Qixiang Zhang and Yike Gao
    Citation: BMC Genomics 2016 17:398
    Content type: Research article Published on:

  12. Water deficit and soil salinity substantially influence plant growth and productivity. When occurring individually, plants often exhibit reduced growth resulting in yield losses. The simultaneous occurrence of...

    Authors: Alina Osthoff, Petra Donà dalle Rose, Jutta A. Baldauf, Hans-Peter Piepho and Frank Hochholdinger
    Citation: BMC Genomics 2019 20:325
    Content type: Research article Published on:

  13. It is believed that the main factors of low prenatal growth in mammals are genetic and environmental. We used isogenic mice maintained in standard conditions to analyze how natural non-genetic microsomia (low ...

    Authors: Alberto Miranda, Angela P López-Cardona, Ricardo Laguna-Barraza, Alexandra Calle, Irene López-Vidriero, Belén Pintado and Alfonso Gutiérrez-Adán
    Citation: BMC Genomics 2014 15:327
    Content type: Research article Published on:

  14. The mitochondrial DNA of kinetoplastid flagellates is distinctive in the eukaryotic world due to its massive size, complex form and large sequence content. Comprised of catenated maxicircles that contain rRNA ...

    Authors: Scott J Westenberger, Gustavo C Cerqueira, Najib M El-Sayed, Bianca Zingales, David A Campbell and Nancy R Sturm
    Citation: BMC Genomics 2006 7:60
    Content type: Research article Published on:

  16. Gene expression can be influenced by DNA methylation 1) distally, at regulatory elements such as enhancers, as well as 2) proximally, at promoters. Our current understanding of the influence of distal DNA meth...

    Authors: Elizabeth M. Kennedy, George N. Goehring, Michael H. Nichols, Chloe Robins, Divya Mehta, Torsten Klengel, Eleazar Eskin, Alicia K. Smith and Karen N. Conneely
    Citation: BMC Genomics 2018 19:476
    Content type: Research article Published on:

  17. Under-dimensioned hearts causing functional problems are associated with higher mortality rates in intensive Atlantic salmon aquaculture. Previous studies have indicated that tetradecylthioacetic acid (TTA) in...

    Authors: Fabian Grammes, Kjell-Arne Rørvik, Magny S Thomassen, Rolf K Berge and Harald Takle
    Citation: BMC Genomics 2012 13:180
    Content type: Research article Published on:

  19. Recent progress in selective breeding of maize (Zea mays L.) towards adaptation to temperate climate has allowed the production of inbred lines withstanding cold springs with temperatures below 8 °C or even close...

    Authors: Alicja Sobkowiak, Maciej Jończyk, Józef Adamczyk, Jarosław Szczepanik, Danuta Solecka, Iwona Kuciara, Katarzyna Hetmańczyk, Joanna Trzcinska-Danielewicz, Marcin Grzybowski, Marek Skoneczny, Jan Fronk and Paweł Sowiński
    Citation: BMC Genomics 2016 17:125
    Content type: Research article Published on:

  20. Due to the limited availability and high cost of fish oil in the face of increasing aquaculture production, there is a need to reduce usage of fish oil in aquafeeds without compromising farm fish health. There...

    Authors: Khalil Eslamloo, Xi Xue, Jennifer R. Hall, Nicole C. Smith, Albert Caballero-Solares, Christopher C. Parrish, Richard G. Taylor and Matthew L. Rise
    Citation: BMC Genomics 2017 18:706
    Content type: Research article Published on:

  21. Identifying the transcription start sites (TSS) of genes is essential for characterizing promoter regions. Several protocols have been developed to capture the 5′ end of transcripts via Cap Analysis of Gene Ex...

    Authors: Jason S. Cumbie, Maria G. Ivanchenko and Molly Megraw
    Citation: BMC Genomics 2015 16:597
    Content type: Methodology article Published on:

  22. Lung airway epithelial cells are part of innate immunity and the frontline of defense against bacterial infections. During infection, airway epithelial cells secrete proinflammatory mediators that participate ...

    Authors: Emel Sen-Kilic, Annalisa B. Huckaby, F. Heath Damron and Mariette Barbier
    Citation: BMC Genomics 2022 23:345
    Content type: Research Published on:

  23. Expansion of aquaculture is seriously limited by reductions in fish oil (FO) supply for aquafeeds. Terrestrial alternatives such as vegetable oils (VO) have been investigated and recently a strategy combining ...

    Authors: Sofia Morais, Jarunan Pratoomyot, John B Taggart, James E Bron, Derrick R Guy, J Gordon Bell and Douglas R Tocher
    Citation: BMC Genomics 2011 12:255
    Content type: Research article Published on:

  24. B-box (BBX) zinc-finger transcription factors play crucial roles in plant growth, development, and abiotic stress responses. Nevertheless, little information is available on sugarcane (Saccharum spp.) BBX genes a...

    Authors: Zilin Wu, Danwen Fu, Xiaoning Gao, Qiaoying Zeng, Xinglong Chen, Jiayun Wu and Nannan Zhang
    Citation: BMC Genomics 2023 24:79
    Content type: Research Published on:

  25. Bees are confronting several environmental challenges, including the intermingled effects of malnutrition and disease. Intuitively, pollen is the healthiest nutritional choice, however, commercial substitutes,...

    Authors: Farida Azzouz-Olden, Arthur Hunt and Gloria DeGrandi-Hoffman
    Citation: BMC Genomics 2018 19:628
    Content type: Research article Published on:

  26. About forty human diseases are caused by repeat instability mutations. A distinct subset of these diseases is the result of extreme expansions of polymorphic trinucleotide repeats; typically CAG repeats encodi...

    Authors: Vicki Whan, Matthew Hobbs, Sean McWilliam, David J Lynn, Ylva Strandberg Lutzow, Mehar Khatkar, William Barendse, Herman Raadsma and Ross L Tellam
    Citation: BMC Genomics 2010 11:654
    Content type: Research article Published on:

  27. Wheat is an excellent species to study freezing tolerance and other abiotic stresses. However, the sequence of the wheat genome has not been completely characterized due to its complexity and large size. To ci...

    Authors: Mario Houde, Mahdi Belcaid, François Ouellet, Jean Danyluk, Antonio F Monroy, Ani Dryanova, Patrick Gulick, Anne Bergeron, André Laroche, Matthew G Links, Luke MacCarthy, William L Crosby and Fathey Sarhan
    Citation: BMC Genomics 2006 7:149
    Content type: Research article Published on:

  28. Bread wheat is a recent allohexaploid (genomic constitution AABBDD) that emerged through a hybridization between tetraploid Triticum turgidum (AABB) and diploid Aegilops tauschii (DD) less than 10,000 years ago. ...

    Authors: Meriem Banouh, David Armisen, Annaig Bouguennec, Cécile Huneau, Mamadou Dia Sow, Caroline Pont, Jérôme Salse and Peter Civáň
    Citation: BMC Genomics 2023 24:255
    Content type: Research Published on:

  29. Higher plants exhibit remarkable phenotypic plasticity allowing them to adapt to an extensive range of environmental conditions. Sorghum is a cereal crop that exhibits exceptional tolerance to adverse conditio...

    Authors: Diana V Dugas, Marcela K Monaco, Andrew Olson, Robert R Klein, Sunita Kumari, Doreen Ware and Patricia E Klein
    Citation: BMC Genomics 2011 12:514
    Content type: Research article Published on:

  30. During embryogenesis the liver is derived from endodermal cells lining the digestive tract. These endodermal progenitor cells contribute to forming the parenchyma of a number of organs including the liver and ...

    Authors: Janice S Lee, William O Ward, Geremy Knapp, Hongzu Ren, Beena Vallanat, Barbara Abbott, Karen Ho, Seth J Karp and J Christopher Corton
    Citation: BMC Genomics 2012 13:33
    Content type: Research article Published on:

  31. Cotton fiber maturity is an important factor for determining the commercial value of cotton. How fiber cell wall development affects fiber maturity is not well understood. A comparison of fiber cross-sections ...

    Authors: Hee Jin Kim, Yuhong Tang, Hong S Moon, Christopher D Delhom and David D Fang
    Citation: BMC Genomics 2013 14:889
    Content type: Research article Published on:

  32. Internal circadian (circa, about; dies, day) clocks enable organisms to maintain adaptive timing of their daily behavioral activities and physiological functions. Eukaryotic clocks consist of core transcription-t...

    Authors: Duncan Tormey, John K. Colbourne, Keithanne Mockaitis, Jeong-Hyeon Choi, Jacqueline Lopez, Joshua Burkhart, William Bradshaw and Christina Holzapfel
    Citation: BMC Genomics 2015 16:754
    Content type: Research article Published on:

  33. Nematostella vectensis, a burrowing sea anemone, has become a popular species for the study of cnidarian development. In previous studies, the expression of a variety of genes has been characterized during N. vec...

    Authors: Rebecca Rae Helm, Stefan Siebert, Sarah Tulin, Joel Smith and Casey William Dunn
    Citation: BMC Genomics 2013 14:266
    Content type: Research article Published on:

  35. The APETALA2/ethylene responsive factor (AP2/ERF) superfamily members are transcription factors that regulate diverse developmental processes and stress responses in plants. They have been identified in many p...

    Authors: Shuting Zhang, Chen Zhu, Yumeng Lyu, Yan Chen, Zihao Zhang, Zhongxiong Lai and Yuling Lin
    Citation: BMC Genomics 2020 21:62
    Content type: Research article Published on:

  36. Radio-Adaptive Response (RAR) is a biological defense mechanism whereby exposure to low dose ionizing radiation (IR) mitigates the detrimental effects of high dose irradiation. RAR has been widely observed in ...

    Authors: Pilar López-Nieva, Manuel Malavé, Laura González-Sánchez, José Fernández-Piqueras, Pablo Fernández-Navarro and Javier Santos
    Citation: BMC Genomics 2016 17:698
    Content type: Research article Published on:

  37. Xanthomonads are plant-associated bacteria responsible for diseases on economically important crops. Xanthomonas fuscans subsp. fuscans (Xff) is one of the causal agents of common bacterial blight of bean. In thi...

    Authors: Armelle Darrasse, Sébastien Carrère, Valérie Barbe, Tristan Boureau, Mario L Arrieta-Ortiz, Sophie Bonneau, Martial Briand, Chrystelle Brin, Stéphane Cociancich, Karine Durand, Stéphanie Fouteau, Lionel Gagnevin, Fabien Guérin, Endrick Guy, Arnaud Indiana, Ralf Koebnik…
    Citation: BMC Genomics 2013 14:761
    Content type: Research article Published on:

  38. Fusarium head blight (FHB) of wheat in North America is caused mostly by the fungal pathogen Fusarium graminearum (Fg). Upon exposure to Fg, wheat initiates a series of cellular responses involving massive transc...

    Authors: Youlian Pan, Ziying Liu, Hélène Rocheleau, François Fauteux, Yunli Wang, Curt McCartney and Thérèse Ouellet
    Citation: BMC Genomics 2018 19:642
    Content type: Research article Published on:

  39. Although Candida albicans and Candida dubliniensis are most closely related, both species behave significantly different with respect to morphogenesis and virulence. In order to gain further insight into the dive...

    Authors: Christian Grumaz, Stefan Lorenz, Philip Stevens, Elena Lindemann, Ulrike Schöck, Julia Retey, Steffen Rupp and Kai Sohn
    Citation: BMC Genomics 2013 14:212
    Content type: Research article Published on:

  40. Soybean is one of the most important oil crops in the world. The domestication of wild soybean has resulted in significant changes in the seed oil content and seed size of cultivated soybeans. To better unders...

    Authors: Yanjie Yao, Erhui Xiong, Xuelian Qu, Junfeng Li, Hongli Liu, Leipo Quan, Wenyan Lu, Xuling Zhu, Meiling Chen, Ke Li, Xiaoming Chen, Yun Lian, Weiguo Lu, Dan Zhang, Xinan Zhou, Shanshan Chu…
    Citation: BMC Genomics 2023 24:494
    Content type: Research Published on:

  41. Transcriptional control of embryonic stem (ES) cell pluripotency has been a subject of intense study. Transcriptional regulators including Oct4 (Oct3/4 index), Sox2 and Nanog are fundamental for maintaining th...

    Authors: Galih Kunarso, Kee-Yew Wong, Lawrence W Stanton and Leonard Lipovich
    Citation: BMC Genomics 2008 9:155
    Content type: Research article Published on:

  42. The behavior of cells in vivo is complex and highly dynamic, as it results from an interplay between intercellular matrix proteins with surface receptors and other microenvironmental cues. Although the effects...

    Authors: Souvik Ghosh, Anastasiya Börsch, Shreemoyee Ghosh and Mihaela Zavolan
    Citation: BMC Genomics 2021 22:238
    Content type: Research article Published on:

  44. Streptococcus agalactiae, or Group B Streptococcus, is a leading cause of neonatal infections and an increasing cause of infections in adults with underlying diseases. In an effort to reconstru...

    Authors: Isabelle Rosinski-Chupin, Elisabeth Sauvage, Odile Sismeiro, Adrien Villain, Violette Da Cunha, Marie-Elise Caliot, Marie-Agnès Dillies, Patrick Trieu-Cuot, Philippe Bouloc, Marie-Frédérique Lartigue and Philippe Glaser
    Citation: BMC Genomics 2015 16:419
    Content type: Research article Published on:

  45. Small-secreted peptides are emerging as important components in cell-cell communication during basic developmental stages of plant cell growth and development. Plant peptide containing sulfated tyrosine 1 (PSY...

    Authors: Khalid Mahmood, Rubini Kannangara, Kirsten Jørgensen and Anja T Fuglsang
    Citation: BMC Genomics 2014 15:441
    Content type: Research article Published on:

  47. Longan (Dimocarpus longan Lour.) is an important fruit tree in the subtropical regions of Southeast Asia and Australia. Among the factors affecting D. longan fruit yield, the difficulty and instability of blossom...

    Authors: Dengwei Jue, Xuelian Sang, Liqin Liu, Bo Shu, Yicheng Wang, Chengming Liu, Yi Wang, Jianghui Xie and Shengyou Shi
    Citation: BMC Genomics 2019 20:126
    Content type: Research article Published on:

  48. The ongoing evolution of the Next Generation Sequencing (NGS) technologies has led to the production of genomic data on a massive scale. While tools for genomic data integration and analysis are becoming incre...

    Authors: Emile Mardoc, Mamadou Dia Sow, Sébastien Déjean and Jérôme Salse
    Citation: BMC Genomics 2024 25:66
    Content type: Research Published on:

  49. Swarming is a multicellular phenomenom characterized by the coordinated and rapid movement of bacteria across semisolid surfaces. In Sinorhizobium meliloti this type of motility has been described in a fadD mutan...

    Authors: Joaquina Nogales, Ana Domínguez-Ferreras, Carol V Amaya-Gómez, Pieter van Dillewijn, Virginia Cuéllar, Juan Sanjuán, José Olivares and María J Soto
    Citation: BMC Genomics 2010 11:157
    Content type: Research article Published on:

  50. Peach bacterial shot hole, caused by Xanthomonas arboricola pv pruni (Xap), is a global bacterial disease that poses a threat to the yield and quality of cultivated peach trees (Prunus persica).

    Authors: Pengxiang Zhu, Haiyan Li, Tailiang Lu, Ruizheng Liang and Baoxiong Wan
    Citation: BMC Genomics 2024 25:214
    Content type: Research Published on:

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