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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. In the past, molecular mechanisms that drive the initiation of an inflammatory response have been studied intensively. However, corresponding mechanisms that sustain the expression of inflammatory response gen...

    Authors: Astrid Riehl, Tobias Bauer, Benedikt Brors, Hauke Busch, Regina Mark, Julia Németh, Christoffer Gebhardt, Angelika Bierhaus, Peter Nawroth, Roland Eils, Rainer König, Peter Angel and Jochen Hess
    Citation: BMC Genomics 2010 11:537
    Content type: Research article Published on:

  2. Multiprotein bridging factor 1 (MBF1) is a crucial transcriptional coactivator in animals, plants, and some microorganisms, that plays a necessary role in growth development and stress tolerance. Zanthoxylum arma...

    Authors: Wenkai Hui, Hao Zheng, Jiangtao Fan, Jingyan Wang, Tahseen Saba, Kai Wang, Jiaojiao Wu, Han Wu, Yu Zhong, Gang Chen and Wei Gong
    Citation: BMC Genomics 2022 23:652
    Content type: Research Published on:

  3. The maintenance of internal pH in bacterial cells is challenged by natural stress conditions, during host infection or in biotechnological production processes. Comprehensive transcriptomic and proteomic analy...

    Authors: Martin Follmann, Ines Ochrombel, Reinhard Krämer, Christian Trötschel, Ansgar Poetsch, Christian Rückert, Andrea Hüser, Marcus Persicke, Dominic Seiferling, Jörn Kalinowski and Kay Marin
    Citation: BMC Genomics 2009 10:621
    Content type: Research article Published on:

  4. The insect exoskeleton provides shape, waterproofing, and locomotion via attached somatic muscles. The exoskeleton is renewed during molting, a process regulated by ecdysteroid hormones. The holometabolous pupa t...

    Authors: Michelle Prioli Miranda Soares, Angel Roberto Barchuk, Ana Carolina Quirino Simões, Alexandre dos Santos Cristino, Flávia Cristina de Paula Freitas, Luísa Lange Canhos and Márcia Maria Gentile Bitondi
    Citation: BMC Genomics 2013 14:576
    Content type: Research article Published on:

  5. Microarray transcript profiling has the potential to illuminate the molecular processes that are involved in the responses of cattle to disease challenges. This knowledge may allow the development of strategie...

    Authors: Laurelea Donaldson, Tony Vuocolo, Christian Gray, Ylva Strandberg, Antonio Reverter, Sean McWilliam, YongHong Wang, Keren Byrne and Ross Tellam
    Citation: BMC Genomics 2005 6:135
    Content type: Research article Published on:

  6. Ghrelin is a multifunctional peptide hormone expressed in a range of normal tissues and pathologies. It has been reported that the human ghrelin gene consists of five exons which span 5 kb of genomic DNA on ch...

    Authors: Inge Seim, Chris Collet, Adrian C Herington and Lisa K Chopin
    Citation: BMC Genomics 2007 8:298
    Content type: Research article Published on:

  7. In a context of climate change, phenotypic plasticity provides long-lived species, such as trees, with the means to adapt to environmental variations occurring within a single generation. In eucalyptus plantat...

    Authors: Emilie Villar, Christophe Klopp, Céline Noirot, Evandro Novaes, Matias Kirst, Christophe Plomion and Jean-Marc Gion
    Citation: BMC Genomics 2011 12:538
    Content type: Research article Published on:

  8. Explored the molecular science of anther development is important for improving productivity and overall yield of crops. Although the role of regulatory RNAs, including long non-coding RNAs (lncRNAs) and micro...

    Authors: Lingshan Kong, Yanjing Zhuo, Jieru Xu, Xiangxu Meng, Yue Wang, Wenxiu Zhao, Hanggui Lai, Jinhui Chen and Jian Wang
    Citation: BMC Genomics 2022 23:596
    Content type: Research Published on:

  9. Acute changes in environmental parameters (e.g., O2, pH, UV, osmolarity, nutrients, etc.) evoke a common transcriptomic response in yeast referred to as the "environmental stress response" (ESR) or "common enviro...

    Authors: Liang-Chuan Lai, Matthew T Kissinger, Patricia V Burke and Kurt E Kwast
    Citation: BMC Genomics 2008 9:627
    Content type: Research article Published on:

  10. CTBT (7-chlorotetrazolo [5,1-c]benzo[1,2,4]triazine) increases efficacy of commonly used antifungal agents by an unknown mechanism. It increases the susceptibility of Saccharomyces cerevisiae, Candida albicans an...

    Authors: Monika Batova, Vlasta Klobucnikova, Zuzana Oblasova, Juraj Gregan, Pavol Zahradnik, Ivan Hapala, Julius Subik and Christoph Schüller
    Citation: BMC Genomics 2010 11:153
    Content type: Research article Published on:

  11. Phosphorus (P) is essential for plant growth and development, and low-phosphorus (LP) stress is a major factor limiting the growth and yield of soybean. Long noncoding RNAs (lncRNAs) have recently been reporte...

    Authors: Jinyu Zhang, Huanqing Xu, Yuming Yang, Xiangqian Zhang, Zhongwen Huang and Dan Zhang
    Citation: BMC Genomics 2021 22:433
    Content type: Research article Published on:

  12. The filamentous fungus, Aspergillus niger, responds to nutrient availability by modulating secretion of various substrate degrading hydrolases. This ability has made it an important organism in industrial product...

    Authors: Thomas R Jørgensen, Theo Goosen, Cees AMJJ van den Hondel, Arthur FJ Ram and Jens JL Iversen
    Citation: BMC Genomics 2009 10:44
    Content type: Research article Published on:

  13. Human stem cells are viewed as a possible source of neurons for a cell-based therapy of neurodegenerative disorders, such as Parkinson's disease. Several protocols that generate different types of neurons from...

    Authors: Sergey V Anisimov, Nicolaj S Christophersen, Ana S Correia, Jia-Yi Li and Patrik Brundin
    Citation: BMC Genomics 2007 8:46
    Content type: Methodology article Published on:

  14. Green feed diet in ruminants exerts a beneficial effect on rumen metabolism and enhances the content of milk nutraceutical quality. At present, a comprehensive analysis focused on the identification of genes, ...

    Authors: Angela Salzano, Salvatore Fioriniello, Nunzia D’Onofrio, Maria Luisa Balestrieri, Riccardo Aiese Cigliano, Gianluca Neglia, Floriana Della Ragione and Giuseppe Campanile
    Citation: BMC Genomics 2023 24:133
    Content type: Research Published on:

  15. Sigma-54 is a central regulator in many pathogenic bacteria and has been linked to a multitude of cellular processes like nitrogen assimilation and important functional traits such as motility, virulence, and ...

    Authors: Christof Francke, Tom Groot Kormelink, Yanick Hagemeijer, Lex Overmars, Vincent Sluijter, Roy Moezelaar and Roland J Siezen
    Citation: BMC Genomics 2011 12:385
    Content type: Research article Published on:

  16. Single nucleotide polymorphism (SNP) validation and large-scale genotyping are required to maximize the use of DNA sequence variation and determine the functional relevance of candidate genes for complex stres...

    Authors: Swarup K Parida, Mitali Mukerji, Ashok K Singh, Nagendra K Singh and Trilochan Mohapatra
    Citation: BMC Genomics 2012 13:426
    Content type: Research article Published on:

  17. Various aspects of genome organization have been explored based on data from distinct technologies, including histone modification ChIP-Seq, 3C, and its derivatives. Recently developed Hi-C techniques enable t...

    Authors: Lin Liu, Yiqian Zhang, Jianxing Feng, Ning Zheng, Junfeng Yin and Yong Zhang
    Citation: BMC Genomics 2012 13:164
    Content type: Methodology article Published on:

  18. Pkh proteins are the PDK1 orthologs in S. cerevisiae. They have redundant and essential activity and are responsible for the phosphorylation of several members of the AGC family of protein kinases. Pkh proteins h...

    Authors: Daniel Pastor-Flores, Jofre Ferrer-Dalmau, Anna Bahí, Martí Boleda, Ricardo M. Biondi and Antonio Casamayor
    Citation: BMC Genomics 2015 16:719
    Content type: Research article Published on:

  19. Validation of microarrays data by quantitative real-time PCR (qPCR) is often limited by the low amount of available RNA. This raised the possibility to perform validation experiments on the amplified amino all...

    Authors: Céline Jeanty, Dan Longrois, Paul-Michel Mertes, Daniel R Wagner and Yvan Devaux
    Citation: BMC Genomics 2010 11:542
    Content type: Methodology article Published on:

  20. The microscopic process of postnatal testicular development in early-puberty animals is poorly understood. Therefore, in this study, 21 male Yiling goats with average ages of 0, 30, 60, 90, 120, 150 and 180 da...

    Authors: Dongdong Bo, Xunping Jiang, Guiqiong Liu, Feng Xu, Ruixue Hu, Teketay Wassie, Yuqing Chong, Sohail Ahmed, Chenhui Liu and Shishay Girmay
    Citation: BMC Genomics 2020 21:372
    Content type: Research article Published on:

  21. Maternal recognition is the crucial step for establishing pregnancy in cattle. This study aims to identify endometrial genes and biological pathways involved in the maternal recognition of pregnancy. Caruncula...

    Authors: Bindu Adhikari, Chin N. Lee, Vedbar S. Khadka, Youping Deng, Glen Fukumoto, Mark Thorne, Kyle Caires, Jenee Odani and Birendra Mishra
    Citation: BMC Genomics 2022 23:494
    Content type: Research Published on:

  22. Knowledge of plant secondary cell wall (SCW) regulation and deposition is mainly based on the Arabidopsis model of a ‘typical’ lignocellulosic SCW. However, SCWs in other plants can vary from this. The SCW of ...

    Authors: Colleen P. MacMillan, Hannah Birke, Aaron Chuah, Elizabeth Brill, Yukiko Tsuji, John Ralph, Elizabeth S. Dennis, Danny Llewellyn and Filomena A. Pettolino
    Citation: BMC Genomics 2017 18:539
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2018 19:261

  23. Helictotrichon virescens is a perennial grass that is primarily distributed in high altitude areas of 2000 ~ 4500 m. It is widely cultivated in the Qinghai-Tibet Plateau of China, strongly resistant to cold, and ...

    Authors: Mingjun Cheng, Kuoshu Cui, Mingmin Zheng, Tao Yang, Junjun Zheng, Xiaofeng Li, Xuan Luo, Yang Zhou, Ruizhen Zhang, Donghai Yan, Mingjiu Yao, Muhammad Zafar Iqbal, Qingping Zhou and Ruyu He
    Citation: BMC Genomics 2022 23:280
    Content type: Research Published on:

  25. Aloe vera is a perennial, succulent, drought-resistant plant that exhibits many pharmacological characteristics such as wound healing ability against skin burns, anti-ulcer, anti-inflammatory, anti-tumor, anti-vi...

    Authors: Pragati Choudhri, Muniya Rani, Rajender S. Sangwan, Ravinder Kumar, Anil Kumar and Vinod Chhokar
    Citation: BMC Genomics 2018 19:427
    Content type: Research article Published on:

  26. Successful early folliculogenesis is crucial for female reproductive function. It requires appropriate gene specific expression of the different types of ovarian cells at different developmental stages. To dat...

    Authors: Agnes Bonnet, Cedric Cabau, Olivier Bouchez, Julien Sarry, Nathalie Marsaud, Sylvain Foissac, Florent Woloszyn, Philippe Mulsant and Beatrice Mandon-Pepin
    Citation: BMC Genomics 2013 14:904
    Content type: Research article Published on:

  27. As a heavy metal, manganese (Mn) can be toxic to plants. Stylo (Stylosanthes) is an important tropical legume that exhibits tolerance to high levels of Mn. However, little is known about the adaptive responses of...

    Authors: Yidan Jia, Xinyong Li, Qin Liu, Xuan Hu, Jifu Li, Rongshu Dong, Pandao Liu, Guodao Liu, Lijuan Luo and Zhijian Chen
    Citation: BMC Genomics 2020 21:861
    Content type: Research article Published on:

  28. Variation of gene expression can lead to phenotypic variation and have therefore been assumed to contribute the diversity of wine yeast (Saccharomyces cerevisiae) properties. However, the molecular bases of this ...

    Authors: Christian Brion, Chloé Ambroset, Isabelle Sanchez, Jean-Luc Legras and Bruno Blondin
    Citation: BMC Genomics 2013 14:681
    Content type: Research article Published on:

  29. Citrus huanglongbing (HLB) disease is caused by endogenous, phloem-restricted, Gram negative, uncultured bacteria named Candidatus Liberibacter africanus (CaLaf), Ca. L. asiaticus (CaLas), and Ca. L. americanus (...

    Authors: Valéria Mafra, Polyana K Martins, Carolina S Francisco, Marcelo Ribeiro-Alves, Juliana Freitas-Astúa and Marcos A Machado
    Citation: BMC Genomics 2013 14:247
    Content type: Research article Published on:

  30. Genome sequences can be conceptualized as arrangements of motifs or words. The frequencies and positional distributions of these words within particular non-coding genomic segments provide important insights i...

    Authors: Jens Lichtenberg, Alper Yilmaz, Joshua D Welch, Kyle Kurz, Xiaoyu Liang, Frank Drews, Klaus Ecker, Stephen S Lee, Matt Geisler, Erich Grotewold and Lonnie R Welch
    Citation: BMC Genomics 2009 10:463
    Content type: Research article Published on:

  31. Vascular endothelial growth factor (VEGF) is an endothelial cell mitogen that stimulates vasculogenesis. It has also been shown to act as a neurotrophic factor in vitro and in vivo. Deletion of the hypoxia respon...

    Authors: Alice Brockington, Paul R Heath, Hazel Holden, Paul Kasher, Florian LP Bender, Filip Claes, Diether Lambrechts, Michael Sendtner, Peter Carmeliet and Pamela J Shaw
    Citation: BMC Genomics 2010 11:203
    Content type: Research article Published on:

  32. Uncovering mechanisms of epigenome evolution is an essential step towards understanding the evolution of different cellular phenotypes. While studies have confirmed DNA methylation as a conserved epigenetic me...

    Authors: Jia Zhou, Renee L. Sears, Xiaoyun Xing, Bo Zhang, Daofeng Li, Nicole B. Rockweiler, Hyo Sik Jang, Mayank N.K. Choudhary, Hyung Joo Lee, Rebecca F. Lowdon, Jason Arand, Brianne Tabers, C. Charles Gu, Theodore J. Cicero and Ting Wang
    Citation: BMC Genomics 2017 18:724
    Content type: Research article Published on:

  33. Understanding the RNA processing of an organism’s transcriptome is an essential but challenging step in understanding its biology. Here we investigate with unprecedented detail the transcriptome of Pseudomonas ae...

    Authors: Erin E. Gill, Luisa S. Chan, Geoffrey L. Winsor, Neil Dobson, Raymond Lo, Shannan J. Ho Sui, Bhavjinder K. Dhillon, Patrick K. Taylor, Raunak Shrestha, Cory Spencer, Robert E. W. Hancock, Peter J. Unrau and Fiona S. L. Brinkman
    Citation: BMC Genomics 2018 19:223
    Content type: Research article Published on:

  34. The application of high-throughput genomic tools in nutrition research is a widespread practice. However, it is becoming increasingly clear that the outcome of individual expression studies is insufficient for...

    Authors: Duccio Cavalieri, Enrica Calura, Chiara Romualdi, Emmanuela Marchi, Marijana Radonjic, Ben Van Ommen and Michael Müller
    Citation: BMC Genomics 2009 10:596
    Content type: Research article Published on:

  35. The ray floret shapes referred to as petal types on the chrysanthemum (Chrysanthemum × morifolium Ramat.) capitulum is extremely abundant, which is one of the most important ornamental traits of chrysanthemum. Ho...

    Authors: Ya Pu, He Huang, Xiaohui Wen, Chenfei Lu, Bohan Zhang, Xueqi Gu, Shuai Qi, Guangxun Fan, Wenkui Wang and Silan Dai
    Citation: BMC Genomics 2020 21:728
    Content type: Research article Published on:

  36. The need for rapid and efficient microbial cell factory design and construction are possible through the enabling technology, metabolic engineering, which is now being facilitated by systems biology approaches...

    Authors: José Manuel Otero, Wanwipa Vongsangnak, Mohammad A Asadollahi, Roberto Olivares-Hernandes, Jérôme Maury, Laurent Farinelli, Loïc Barlocher, Magne Østerås, Michel Schalk, Anthony Clark and Jens Nielsen
    Citation: BMC Genomics 2010 11:723
    Content type: Research article Published on:

  37. Neurodegenerative diseases are progressive and irreversible and they can be initiated by mutations in specific genes. Spalt-like genes (Sall) encode transcription factors expressed in the central nervous system. ...

    Authors: María José Ferreiro, Naiara Rodríguez-Ezpeleta, Coralia Pérez, Michael Hackenberg, Ana María Aransay, Rosa Barrio and Rafael Cantera
    Citation: BMC Genomics 2012 13:483
    Content type: Research article Published on:

  38. Investigation of tomato genetic resources is a crucial issue for better straight evolution and genetic studies as well as tomato breeding strategies. Traditional Vesuviano and San Marzano varieties grown in Ca...

    Authors: Maria Raffaella Ercolano, Adriana Sacco, Francesca Ferriello, Raffaella D’Alessandro, Paola Tononi, Alessandra Traini, Amalia Barone, Elisa Zago, Maria Luisa Chiusano, Genny Buson, Massimo Delledonne and Luigi Frusciante
    Citation: BMC Genomics 2014 15:138
    Content type: Research article Published on:

  39. The rice blast fungus, Magnaporthe oryzae is a destructive pathogen of rice and other related crops, causing significant yield losses worldwide. Endogenous small RNAs (sRNAs), including small interfering RNAs (si...

    Authors: Vidhyavathi Raman, Stacey A Simon, Amanda Romag, Feray Demirci, Sandra M Mathioni, Jixian Zhai, Blake C Meyers and Nicole M Donofrio
    Citation: BMC Genomics 2013 14:326
    Content type: Research article Published on:

  41. Prolonged exposure to elevated free fatty acids induces β-cell failure (lipotoxicity) and contributes to the pathogenesis of type 2 diabetes. In vitro exposure of β-cells to the saturated free fatty acid palmi...

    Authors: Maria Lytrivi, Kassem Ghaddar, Miguel Lopes, Victoria Rosengren, Anthony Piron, Xiaoyan Yi, Henrik Johansson, Janne Lehtiö, Mariana Igoillo-Esteve, Daniel A. Cunha, Lorella Marselli, Piero Marchetti, Henrik Ortsäter, Decio L. Eizirik and Miriam Cnop
    Citation: BMC Genomics 2020 21:590
    Content type: Research article Published on:

  42. The oocyte development ability of prepubertal animals is significantly lower than that of adult animals. Granulosa cells (GCs) have an important function on regulation of follicular and oocyte development. The...

    Authors: Hao Tian, Panyu Ren, Kailing Liu, Chunjuan Qiu, Lihong Fan, Junlong Li and Jian Hou
    Citation: BMC Genomics 2022 23:151
    Content type: Research article Published on:

  43. Domestic broiler chickens rapidly accumulate adipose tissue due to intensive genetic selection for rapid growth and are naturally hyperglycemic and insulin resistant, making them an attractive addition to the ...

    Authors: Bo Ji, Ben Ernest, Jessica R Gooding, Suchita Das, Arnold M Saxton, Jean Simon, Joelle Dupont, Sonia Métayer-Coustard, Shawn R Campagna and Brynn H Voy
    Citation: BMC Genomics 2012 13:441
    Content type: Research article Published on:

  44. Recently, ProFAT and BATLAS studies identified brown and white adipocytes marker genes based on analysis of large databases. They offered scores to determine the thermogenic status of adipocytes using the gene...

    Authors: Beáta B. Tóth, Zoltán Barta, Ákos Barnabás Barta and László Fésüs
    Citation: BMC Genomics 2021 22:886
    Content type: Database Published on:

  45. Nutritional quality of phytoplankton is a major determinant of the trophic transfer efficiency at the plant-herbivore interface in freshwater food webs. In particular, the phytoplankton’s content of the essent...

    Authors: Heidrun S. Windisch and Patrick Fink
    Citation: BMC Genomics 2019 20:894
    Content type: Research article Published on:

  46. Weaning of beef calves is a necessary husbandry practice and involves separating the calf from its mother, resulting in numerous stressful events including dietary change, social reorganisation and the cessati...

    Authors: Aran O’Loughlin, David J Lynn, Mark McGee, Sean Doyle, Matthew McCabe and Bernadette Earley
    Citation: BMC Genomics 2012 13:250
    Content type: Research article Published on:

  47. Non-coding gene regulatory enhancers are essential to transcription in mammalian cells. As a result, a large variety of experimental and computational strategies have been developed to identify cis-regulatory enh...

    Authors: Mary Lauren Benton, Sai Charan Talipineni, Dennis Kostka and John A. Capra
    Citation: BMC Genomics 2019 20:511
    Content type: Research article Published on:

  48. Dynamics of polyadenylation vs. deadenylation determine the fate of several developmentally regulated genes. Decay of a subset of maternal mRNAs and new transcription define the maternal-to-zygotic transition,...

    Authors: Sarita S Paranjpe, Ulrike G Jacobi, Simon J van Heeringen and Gert Jan C Veenstra
    Citation: BMC Genomics 2013 14:762
    Content type: Research article Published on:

  50. Genetic selection of Atlantic salmon families better adapted to alternative feed formulations containing high levels of vegetable ingredients has been suggested to ensure sustainable growth of aquaculture. The...

    Authors: Sofia Morais, John B Taggart, Derrick R Guy, J Gordon Bell and Douglas R Tocher
    Citation: BMC Genomics 2012 13:410
    Content type: Research article Published on:

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BMC Genomics

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