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6357 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 34 of 128

  1. Gills of euryhaline fishes possess great physiological and structural plasticity to adapt to large changes in external osmolality and to participate in ion uptake/excretion, which is essential for the re-estab...

    Authors: Hoi Man Ng, Jeff Cheuk Hin Ho, Wenyan Nong, Jerome Ho Lam Hui, Keng Po Lai and Chris Kong Chu Wong
    Citation: BMC Genomics 2020 21:208
    Content type: Research article Published on:

  2. The Plasmodium falciparum genome (3D7 strain) published in 2002, revealed ~5,400 genes, mostly based on in silico predictions. Experimental data is therefore required for structural and functional assessments of

    Authors: Isabelle Florent, Betina M Porcel, Elodie Guillaume, Corinne Da Silva, François Artiguenave, Eric Maréchal, Laurent Bréhélin, Olivier Gascuel, Sébastien Charneau, Patrick Wincker and Philippe Grellier
    Citation: BMC Genomics 2009 10:235
    Content type: Research article Published on:

  3. The wine industry needs better-adapted yeasts to grow at low temperature because it is interested in fermenting at low temperature to improve wine aroma. Elucidating the response to cold in Saccharomyces cerevisi...

    Authors: Estéfani García-Ríos, María López-Malo and José Manuel Guillamón
    Citation: BMC Genomics 2014 15:1059
    Content type: Research article Published on:

  4. Elucidation of immune populations with single-cell RNA-seq has greatly benefited the field of immunology by deepening the characterization of immune heterogeneity and leading to the discovery of new subtypes. ...

    Authors: Tracy M. Yamawaki, Daniel R. Lu, Daniel C. Ellwanger, Dev Bhatt, Paolo Manzanillo, Vanessa Arias, Hong Zhou, Oh Kyu Yoon, Oliver Homann, Songli Wang and Chi-Ming Li
    Citation: BMC Genomics 2021 22:66
    Content type: Research article Published on:

  5. Deciphering gene interaction networks (GINs) from time-course gene expression (TCGx) data is highly valuable to understand gene behaviors (e.g., activation, inhibition, time-lagged causality) at the system lev...

    Authors: Qian Liu, Renhua Song and Jinyan Li
    Citation: BMC Genomics 2015 16(Suppl 12):S4
    Content type: Research Published on:

    This article is part of a Supplement: Volume 16 Supplement 12

  6. Usually the microRNA (miRNA)-mediated gene regulatory network (GRN) is constructed from the investigation of miRNA expression profiling and target predictions. However, the higher/lower expression level of miR...

    Authors: Rui Wang, Zhongyi Yang, Yuhan Fei, Jiejie Feng, Hui Zhu, Fang Huang, Hongsheng Zhang and Ji Huang
    Citation: BMC Genomics 2019 20:534
    Content type: Methodology article Published on:

  7. Crops face several environmental stresses (biotic and abiotic), thus resulting in severe yield losses. Around the globe abiotic stresses are the main contributors of plant damages, primarily drought and salini...

    Authors: Teame Gereziher Mehari, Yuqing Hou, Yanchao Xu, Muhammad Jawad Umer, Margaret Linyerera Shiraku, Yuhong Wang, Heng Wang, Renhai Peng, Yangyang Wei, Xiaoyan Cai, Zhongli Zhou and Fang Liu
    Citation: BMC Genomics 2022 23:648
    Content type: Research Published on:

  8. Intermuscular bones (IBs) and ribs both are a part of skeletal system in teleosts, but with different developing process. The chemical composition of fish IBs and ribs as well as the underlying mechanism about...

    Authors: Chun-Hong Nie, Shi-Ming Wan, Tea Tomljanovic, Tomislav Treer, Chung-Der Hsiao, Wei-Min Wang and Ze-Xia Gao
    Citation: BMC Genomics 2017 18:147
    Content type: Research article Published on:

  10. High-throughput proteomics was used to determine the role of the fish liver in defense responses to bacterial infection. This was done using a rainbow trout (Oncorhynchus mykiss) model following infection with Ae...

    Authors: Dwight R Causey, Moritz A N Pohl, David A Stead, Samuel A M Martin, Christopher J Secombes and Daniel J Macqueen
    Citation: BMC Genomics 2018 19:719
    Content type: Research article Published on:

  11. The detailed analysis of transcriptional regulation is crucially important for understanding biological processes. The gap gene network in Drosophila attracts large interest among researches studying mechanisms o...

    Authors: Konstantin Kozlov, Vitaly Gursky, Ivan Kulakovskiy and Maria Samsonova
    Citation: BMC Genomics 2014 15(Suppl 12):S6
    Content type: Research Published on:

    This article is part of a Supplement: Volume 15 Supplement 12

  12. Mitogen-activated protein kinases (MAPKs) plays essential roles in the development, hormone regulation and abiotic stress response of plants. Nevertheless, a comprehensive study on MAPK family members has thus...

    Authors: Yingjun Yao, Haixia Zhao, Lei Sun, Wenjing Wu, Chenglei Li and Qi Wu
    Citation: BMC Genomics 2022 23:96
    Content type: Research Published on:

  13. Genome-wide association studies (GWAS) identify regions of the genome that are associated with particular traits, but do not typically identify specific causative genetic elements. For example, while a large n...

    Authors: Jay Pendse, Prasanna V Ramachandran, Jianbo Na, Narisu Narisu, Jill L Fink, Ross L Cagan, Francis S Collins and Thomas J Baranski
    Citation: BMC Genomics 2013 14:136
    Content type: Research article Published on:

  15. Protein kinases are enzymes controlling different cellular functions. Genetic alterations often result in kinase dysregulation, making kinases a very attractive class of druggable targets in several human dise...

    Authors: Giovanni Carapezza, Carlo Cusi, Ettore Rizzo, Laura Raddrizzani, Sebastiano Di Bella, Alessio Somaschini, Antonella Leone, Rosita Lupi, Margherita Mutarelli, Vincenzo Nigro, Diego di Bernardo, Paolo Magni, Antonella Isacchi and Roberta Bosotti
    Citation: BMC Genomics 2019 20:307
    Content type: Methodology article Published on:

  16. Parent-specific methylation of specific CpG residues is critical to imprinting in eutherian mammals, but its importance to imprinting in marsupials and, thus, the evolutionary origins of the imprinting mechani...

    Authors: Betty R Lawton, Benjamin R Carone, Craig J Obergfell, Gianni C Ferreri, Christina M Gondolphi, John L VandeBerg, Ikhide Imumorin, Rachel J O'Neill and Michael J O'Neill
    Citation: BMC Genomics 2008 9:205
    Content type: Research article Published on:

  17. Cope’s gray treefrog, Dryophytes chrysoscelis, withstands the physiological challenges of corporeal freezing, partly by accumulating cryoprotective compounds of hepatic origin, including glycerol, urea, and gluco...

    Authors: M. Clara F. do Amaral, James Frisbie, Raphael J. Crum, David L. Goldstein and Carissa M. Krane
    Citation: BMC Genomics 2020 21:226
    Content type: Research article Published on:

  18. The control of mosquitoes transmitting infectious diseases relies mainly on the use of chemical insecticides. However, mosquito control programs are now threatened by the emergence of insecticide resistance. H...

    Authors: Jean-Philippe David, Eric Coissac, Christelle Melodelima, Rodolphe Poupardin, Muhammad Asam Riaz, Alexia Chandor-Proust and Stéphane Reynaud
    Citation: BMC Genomics 2010 11:216
    Content type: Research article Published on:

  19. Few, if any, protozoan parasites are reported to exhibit extreme organ tropism like the flagellate Tritrichomonas foetus. In cattle, T. foetus infects the reproductive system causing abortion, whereas the infecti...

    Authors: Victoria Morin-Adeline, Rodrigo Lomas, Denis O’Meally, Colin Stack, Ana Conesa and Jan Šlapeta
    Citation: BMC Genomics 2014 15:955
    Content type: Research article Published on:

  20. The midgut of hematophagous insects, such as disease transmitting mosquitoes, carries out a variety of essential functions that mostly relate to blood feeding. The midgut of the female malaria vector mosquito Ano...

    Authors: Emma Warr, Ruth Aguilar, Yuemei Dong, Vassiliki Mahairaki and George Dimopoulos
    Citation: BMC Genomics 2007 8:37
    Content type: Research article Published on:

  21. microRNAs (miRNAs) are key regulators of gene expression and play important roles in many aspects of plant biology. The role(s) of miRNAs in nitrogen-fixing root nodules of leguminous plants such as soybean is...

    Authors: Marie Turner, Oliver Yu and Senthil Subramanian
    Citation: BMC Genomics 2012 13:169
    Content type: Research article Published on:

  22. Plasmodium infection has been shown to compromise the fitness of the mosquito vector, reducing its fecundity and longevity. However, from an evolutionary perspective, the impact of Plasmodium infection as a selec...

    Authors: Ruth Aguilar, Suchismita Das, Yuemei Dong and George Dimopoulos
    Citation: BMC Genomics 2007 8:451
    Content type: Research article Published on:

  23. Several approaches have been developed for miRNA target prediction, including methods that incorporate expression profiling. However the methods are still in need of improvements due to a high false discovery ...

    Authors: Claus H Bang-Berthelsen, Lykke Pedersen, Tina Fløyel, Peter H Hagedorn, Titus Gylvin and Flemming Pociot
    Citation: BMC Genomics 2011 12:97
    Content type: Research article Published on:

  25. Tribenuron methyl (TBM) is an herbicide that inhibits sulfonylurea acetolactate synthase (ALS) and is one of the most widely used broad-leaved herbicides for crop production. However, soil residues or drifting...

    Authors: Liuyan Wang, Ruili Wang, Wei Lei, Jiayi Wu, Chenyang Li, Hongsong Shi, Lijiao Meng, Fang Yuan, Qingyuan Zhou and Cui Cui
    Citation: BMC Genomics 2021 22:299
    Content type: Research article Published on:

  26. The identification of genes differentially expressed in the skeletal muscle of pigs displaying distinct growth and fatness profiles might contribute to identify the genetic factors that influence the phenotypi...

    Authors: Tainã Figueiredo Cardoso, Raquel Quintanilla, Anna Castelló, Rayner González-Prendes, Marcel Amills and Ángela Cánovas
    Citation: BMC Genomics 2018 19:145
    Content type: Research article Published on:

  27. Earlier studies were focused on the genetics of temperate and tropical maize under drought. We identified genetic loci and their association with functional mechanisms in 240 accessions of subtropical maize us...

    Authors: Nepolean Thirunavukkarasu, Firoz Hossain, Kanika Arora, Rinku Sharma, Kaliyugam Shiriga, Swati Mittal, Sweta Mohan, Pottekatt Mohanlal Namratha, Sreelatha Dogga, Tikka Shobha Rani, Sumalini Katragadda, Abhishek Rathore, Trushar Shah, Trilochan Mohapatra and Hari Shankar Gupta
    Citation: BMC Genomics 2014 15:1182
    Content type: Research article Published on:

  29. Human adenoviruses (HAdV) are causing a broad spectrum of diseases. One of the most severe forms of adenovirus infection is a disseminated disease resulting in significant morbidity and mortality. Several repo...

    Authors: Soeren Hofmayer, Ijad Madisch, Sebastian Darr, Fabienne Rehren and Albert Heim
    Citation: BMC Genomics 2009 10:557
    Content type: Research article Published on:

  30. The SOS response is an almost ubiquitous response of cells to genotoxic stresses. The full complement of genes in the SOS regulon for Vibrio species has only been addressed through bioinformatic analyses predicti...

    Authors: Evelyne Krin, Sebastian Aguilar Pierlé, Odile Sismeiro, Bernd Jagla, Marie-Agnès Dillies, Hugo Varet, Oihane Irazoki, Susana Campoy, Zoé Rouy, Stéphane Cruveiller, Claudine Médigue, Jean-Yves Coppée and Didier Mazel
    Citation: BMC Genomics 2018 19:373
    Content type: Research article Published on:

  31. The role of the RNA polymerase sigma factor RpoN in regulation of gene expression in Geobacter sulfurreducens was investigated to better understand transcriptional regulatory networks as part of an effort to deve...

    Authors: Ching Leang, Julia Krushkal, Toshiyuki Ueki, Marko Puljic, Jun Sun, Katy Juárez, Cinthia Núñez, Gemma Reguera, Raymond DiDonato, Bradley Postier, Ronald M Adkins and Derek R Lovley
    Citation: BMC Genomics 2009 10:331
    Content type: Research article Published on:

  32. An increasing number of long noncoding RNAs (lncRNAs) have been found to play important roles in sex differentiation and gonad development by regulating gene expression at the epigenetic, transcriptional and p...

    Authors: Zhi He, Lijuan Ye, Deying Yang, Zhijun Ma, Faqiang Deng, Zhide He, Jiaxiang Hu, Hongjun Chen, Li Zheng, Yong Pu, Yuanyuan Jiao, Qiqi Chen, Kuo Gao, Jinxin Xiong, Bolin Lai, Xiaobin Gu…
    Citation: BMC Genomics 2022 23:450
    Content type: Research Published on:

  33. Rice false smut caused by Ustilaginoidea virens has recently become one of the most devastating rice diseases worldwide. Breeding and deployment of resistant varieties is considered as the most effective strategy...

    Authors: Yanqing Han, Kang Zhang, Jun Yang, Nan Zhang, Anfei Fang, Yong Zhang, Yongfeng Liu, Zhiyi Chen, Tom Hsiang and Wenxian Sun
    Citation: BMC Genomics 2015 16:955
    Content type: Research article Published on:

  34. The biological control agent Aspergillus aculeatus Asp-4 colonizes and degrades sclerotia of Sclerotinia sclerotiorum resulting in reduced germination and disease caused by this important plant pathogen. Molecula...

    Authors: Xiaojia Hu, Lu Qin, Daniel P. Roberts, Dilip K. Lakshman, Yangmin Gong, Jude E. Maul, Lihua Xie, Changbing Yu, Yinshui Li, Lei Hu, Xiangsheng Liao and Xing Liao
    Citation: BMC Genomics 2017 18:674
    Content type: Research article Published on:

  35. Our purpose was to obtain genome-wide expression data for the rabbit species on the responses of peripheral blood mononuclear cells (PBMCs) after in vitro stimulation by lipopolysaccharide (LPS) or phorbol myr...

    Authors: Vincent Jacquier, Jordi Estellé, Barbara Schmaltz-Panneau, Jérôme Lecardonnel, Marco Moroldo, Gaëtan Lemonnier, Jason Turner-Maier, Véronique Duranthon, Isabelle P Oswald, Thierry Gidenne and Claire Rogel-Gaillard
    Citation: BMC Genomics 2015 16:26
    Content type: Research article Published on:

  36. The Limbal epithelial crypt (LEC) is a solid cord of cells, approximately 120 microns long. It arises from the undersurface of interpalisade rete ridges of the limbal palisades of Vogt and extends deeper into ...

    Authors: Bina B Kulkarni, Patrick J Tighe, Imran Mohammed, Aaron M Yeung, Desmond G Powe, Andrew Hopkinson, Vijay A Shanmuganathan and Harminder S Dua
    Citation: BMC Genomics 2010 11:526
    Content type: Research article Published on:

  37. The wild relatives of crop species represent a potentially valuable source of novel genetic variation, particularly in the context of improving the crop’s level of tolerance to abiotic stress. The mechanistic ...

    Authors: Anna Janská, Pavel Svoboda, Vojtěch Spiwok, Ladislav Kučera and Jaroslava Ovesná
    Citation: BMC Genomics 2018 19:317
    Content type: Research article Published on:

  39. Stripe rust (Puccinia striiformis f. sp. tritici; Pst) and powdery mildew (Blumeria graminis f. sp. tritici; Bgt) are important diseases of wheat (Triticum aestivum) worldwide. Similar mechanisms and gene transcr...

    Authors: Hong Zhang, Yongzheng Yang, Changyou Wang, Min Liu, Hao Li, Ying Fu, Yajuan Wang, Yingbin Nie, Xinlun Liu and Wanquan Ji
    Citation: BMC Genomics 2014 15:898
    Content type: Research article Published on:

  40. The liver X receptors (LXRs) are oxysterol sensing nuclear receptors with multiple effects on metabolism and immune cells. However, the complete genome-wide cistrome of LXR in cells of human origin has not yet...

    Authors: Petri Pehkonen, Lynn Welter-Stahl, Janine Diwo, Jussi Ryynänen, Anke Wienecke-Baldacchino, Sami Heikkinen, Eckardt Treuter, Knut R Steffensen and Carsten Carlberg
    Citation: BMC Genomics 2012 13:50
    Content type: Research article Published on:

  41. BBX transcription factors are a kind of zinc finger transcription factors with one or two B-box domains, which partilant in plant growth, development and response to abiotic or biotic stress. The BBX family ha...

    Authors: Jing Ma, Jia-xi Dai, Xiao-wei Liu and Duo Lin
    Citation: BMC Genomics 2021 22:883
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2023 24:785

  42. Mechanical stimulation is necessary for regulating correct formation of the skeleton. Here we test the hypothesis that mechanical stimulation of the embryonic skeletal system impacts expression levels of genes...

    Authors: Rebecca A Rolfe, Niamh C Nowlan, Elaine M Kenny, Paul Cormican, Derek W Morris, Patrick J Prendergast, Daniel Kelly and Paula Murphy
    Citation: BMC Genomics 2014 15:48
    Content type: Research article Published on:

  43. Expression levels of mRNA and protein by cell types exhibit a range of correlations for different genes. In this study, we compared levels of mRNA abundance for several cluster designation (CD) genes determine...

    Authors: Laura E Pascal, Lawrence D True, David S Campbell, Eric W Deutsch, Michael Risk, Ilsa M Coleman, Lillian J Eichner, Peter S Nelson and Alvin Y Liu
    Citation: BMC Genomics 2008 9:246
    Content type: Research article Published on:

  44. Tea plants grown in high-latitude areas are often damaged by extreme freezing temperatures in winter, leading to huge economic losses. Here, the physiological and gene expression characteristics of two tea cul...

    Authors: Jinlei Luo, Shuangjie Huang, Yali Chang, Hui Li and Guiyi Guo
    Citation: BMC Genomics 2023 24:558
    Content type: Research Published on:

  45. Species interactions can promote mating behavior divergence, particularly when these interactions are costly due to maladaptive hybridization. Selection against hybridization can indirectly cause evolution of ...

    Authors: Oscar E. Ospina, Alan R. Lemmon, Mysia Dye, Christopher Zdyrski, Sean Holland, Daniel Stribling, Michelle L. Kortyna and Emily Moriarty Lemmon
    Citation: BMC Genomics 2021 22:711
    Content type: Research article Published on:

  46. Climate change poses a multi-dimensional threat to food and agricultural systems as a result of increased risk to animal growth, development, health, and food product quality. This study was designed to charac...

    Authors: Kent M. Reed, Kristelle M. Mendoza, Juan E. Abrahante, Natalie E. Barnes, Sandra G. Velleman and Gale M. Strasburg
    Citation: BMC Genomics 2017 18:352
    Content type: Research article Published on:

  47. Somatic embryogenesis is a notable illustration of cell totipotency, by which somatic cells undergo dedifferentiation and then differentiate into somatic embryos. Our previous work demonstrated that pretreatme...

    Authors: Xueping Shi, Cuijie Zhang, Qinhong Liu, Zhe Zhang, Bo Zheng and Manzhu Bao
    Citation: BMC Genomics 2016 17:26
    Content type: Research article Published on:

  48. Bread wheat is one of the world’s most important food crops and considerable efforts have been made to develop genomic resources for this species. This includes an on-going project by the International Wheat G...

    Authors: Andreas W Schreiber, Matthew J Hayden, Kerrie L Forrest, Stephan L Kong, Peter Langridge and Ute Baumann
    Citation: BMC Genomics 2012 13:492
    Content type: Research article Published on:

  50. Verticillium dahliae (Vd) and Verticillium albo-atrum (Va) are cosmopolitan soil fungi causing very disruptive vascular diseases on a wide range of crop plants. To date, no sexual stage has been identified in eit...

    Authors: Stefan G Amyotte, Xiaoping Tan, Kayla Pennerman, Maria del Mar Jimenez-Gasco, Steven J Klosterman, Li-Jun Ma, Katherine F Dobinson and Paola Veronese
    Citation: BMC Genomics 2012 13:314
    Content type: Research article Published on:

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