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6357 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 37 of 128

  1. Aphids are among the most destructive pests in temperate climates, causing significant damage on several crops including tomato. We carried out a transcriptomic and proteomic study to get insights into the mol...

    Authors: Valentina Coppola, Mariangela Coppola, Mariapina Rocco, Maria Cristina Digilio, Chiara D’Ambrosio, Giovanni Renzone, Rosanna Martinelli, Andrea Scaloni, Francesco Pennacchio, Rosa Rao and Giandomenico Corrado
    Citation: BMC Genomics 2013 14:515
    Content type: Research article Published on:

  2. Filarial nematodes are important pathogens in the tropics transmitted to humans via the bite of blood sucking arthropod vectors. The molecular mechanisms underpinning survival and differentiation of these para...

    Authors: Alan D Winter, Victoria Gillan, Kirsty Maitland, Richard D Emes, Brett Roberts, Gillian McCormack, William Weir, Anna V Protasio, Nancy Holroyd, Matthew Berriman, Collette Britton and Eileen Devaney
    Citation: BMC Genomics 2015 16:331
    Content type: Research article Published on:

  3. In addition to their cytotoxic nature, reactive oxygen species (ROS) are also signal molecules in diverse cellular processes in eukaryotic organisms. Linking genome-wide transcriptional changes to cellular phy...

    Authors: István Pócsi, Márton Miskei, Zsolt Karányi, Tamás Emri, Patricia Ayoubi, Tünde Pusztahelyi, György Balla and Rolf A Prade
    Citation: BMC Genomics 2005 6:182
    Content type: Research article Published on:

  4. Small RNA-guided transcriptional silencing (nuclear RNAi) is fundamental to genome integrity and epigenetic inheritance. Despite recent progress in identifying the capability and genetic requirements for nucle...

    Authors: Julie Zhouli Ni, Esteban Chen and Sam Guoping Gu
    Citation: BMC Genomics 2014 15:1157
    Content type: Research article Published on:

  5. The activity of the yeast activator protein 1 (Yap1p) increases under stress conditions, which leads to enhanced transcription of a number of genes encoding protective enzymes or other proteins. To obtain a gl...

    Authors: He Jun, Thomas Kieselbach and Leif J Jönsson
    Citation: BMC Genomics 2012 13:230
    Content type: Research article Published on:

  6. Winter wheat requires prolonged exposure to low temperature to initiate flowering (vernalization). Shoot apical meristem of the crown is the site of cold perception, which produces leaf primordia during vegeta...

    Authors: Menglei Wang, Chenhui Yang, Kangning Wei, Miao Zhao, Liqiang Shen, Jie Ji, Li Wang, Daijing Zhang, Junqiang Guo, Yun Zheng, Juanjuan Yu, Mo Zhu, Haiying Liu and Yong-Fang Li
    Citation: BMC Genomics 2021 22(Suppl 3):793
    Content type: Research Published on:

    This article is part of a Supplement: Volume 22 Supplement 3

  7. Seed germination is a series of ordered physiological and morphogenetic processes and a critical stage in plant life cycle. Tamarix hispida is one of the most salt-tolerant plant species; however, its seed germin...

    Authors: Xin’an Pang, Jiangtao Suo, Shuo Liu, Jindong Xu, Tian’ge Yang, Niyan Xiang, Yue Wu, Bojie Lu, Rui Qin, Hong Liu and Jialing Yao
    Citation: BMC Genomics 2022 23:109
    Content type: Research Published on:

  8. Protein Disulfide Isomerases are thiol oxidoreductase chaperones from thioredoxin superfamily with crucial roles in endoplasmic reticulum proteostasis, implicated in many diseases. The family prototype PDIA1 i...

    Authors: Daniela Kajihara, Chung-Chau Hon, Aimi Naim Abdullah, João Wosniak Jr, Ana Iochabel S. Moretti, Joice F. Poloni, Diego Bonatto, Kosuke Hashimoto, Piero Carninci and Francisco R. M. Laurindo
    Citation: BMC Genomics 2020 21:766
    Content type: Research article Published on:

  10. Aristolochic Acid (AA), a natural component of Aristolochia plants that is found in a variety of herbal remedies and health supplements, is classified as a Group 1 carcinogen by the International Agency for Re...

    Authors: Zhiguang Li, Taichun Qin, Kejian Wang, Michael Hackenberg, Jian Yan, Yuan Gao, Li-Rong Yu, Leming Shi, Zhenqiang Su and Tao Chen
    Citation: BMC Genomics 2015 16:365
    Content type: Research article Published on:

  11. As global warming continues, heat stress (HS) is becoming an increasingly significant factor limiting plant growth and reproduction, especially for cool-season grass species. The objective of this study was to...

    Authors: Qi Yan, Xifang Zong, Fan Wu, Jie Li, Tiantian Ma, Yufeng Zhao, Qian Ma, Penglei Wang, Yanrong Wang and Jiyu Zhang
    Citation: BMC Genomics 2020 21:715
    Content type: Research article Published on:

  12. Microarray technology provides a powerful tool for defining gene expression profiles of airway epithelium that lend insight into the pathogenesis of human airway disorders. The focus of this study was to estab...

    Authors: Tina Raman, Timothy P O'Connor, Neil R Hackett, Wei Wang, Ben-Gary Harvey, Marc A Attiyeh, David T Dang, Matthew Teater and Ronald G Crystal
    Citation: BMC Genomics 2009 10:493
    Content type: Research article Published on:

  13. Coliform bacteria are the most common etiologic agents in severe mastitis of cows. Escherichia coli infections are mostly restricted to a single udder quarter whereas neighboring quarters stay clinically inappare...

    Authors: Simone Mitterhuemer, Wolfram Petzl, Stefan Krebs, Daniel Mehne, Andrea Klanner, Eckhard Wolf, Holm Zerbe and Helmut Blum
    Citation: BMC Genomics 2010 11:138
    Content type: Research article Published on:

  14. High temperature induces early bolting in lettuce (Lactuca sativa L.), which affects both quality and production. However, the molecular mechanism underlying high temperature-induced bolting is still limited.

    Authors: Jinghong Hao, Junwei Yang, Xiaofeng Liu, Gaoyang Pan, Yunfeng Li, Xiaolan Zhang, Yingyan Han, Shuangxi Fan and Zhaoyang Zhou
    Citation: BMC Genomics 2022 23:580
    Content type: Research Published on:

  15. Crocins are soluble apocarotenoids that mainly accumulate in the stigma tissue of Crocus sativus and provide the characteristic red color to saffron spice, in addition to being responsible for many of the medicin...

    Authors: Oussama Ahrazem, Javier Argandoña, Alessia Fiore, Andrea Rujas, Ángela Rubio-Moraga, Raquel Castillo and Lourdes Gómez-Gómez
    Citation: BMC Genomics 2019 20:320
    Content type: Research article Published on:

  16. Interactions between the gene products encoded by the mitochondrial and nuclear genomes play critical roles in eukaryotic cellular function. However, the effects mitochondrial DNA (mtDNA) levels have on the nu...

    Authors: Darren Magda, Philip Lecane, Julia Prescott, Patricia Thiemann, Xuan Ma, Patricia K Dranchak, Donna M Toleno, Krishna Ramaswamy, Kimberly D Siegmund and Joseph G Hacia
    Citation: BMC Genomics 2008 9:521
    Content type: Research article Published on:

  17. Bathymodiolus azoricus is a deep-sea hydrothermal vent mussel found in association with large faunal communities living in chemosynthetic environments at the bottom of the sea floor near the Azores Islands. Inves...

    Authors: Raul Bettencourt, Miguel Pinheiro, Conceição Egas, Paula Gomes, Mafalda Afonso, Timothy Shank and Ricardo Serrão Santos
    Citation: BMC Genomics 2010 11:559
    Content type: Research article Published on:

  18. Colletotrichum graminicola and C. sublineola cause anthracnose leaf and stalk diseases of maize and sorghum, respectively. In spite of their close evolutionary relationship, the two species a...

    Authors: E. A. S. Buiate, K. V. Xavier, N. Moore, M. F. Torres, M. L. Farman, C. L. Schardl and L. J. Vaillancourt
    Citation: BMC Genomics 2017 18:67
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2018 19:686

  19. Congenital heart defect (CHD) account for 25% of all human congenital abnormalities. However, very few CHD-causing genes have been identified so far. A promising approach for the identification of essential ca...

    Authors: Francesca Amati, Laura Diano, Luisa Campagnolo, Lucia Vecchione, Daria Cipollone, Susana Bueno, Gianluca Prosperini, Alessandro Desideri, Gregorio Siracusa, Giovanni Chillemi, Bruno Marino and Giuseppe Novelli
    Citation: BMC Genomics 2010 11:497
    Content type: Research article Published on:

  20. The human pathogen Corynebacterium diphtheriae is the causative agent of diphtheria. In the 1990s a large diphtheria outbreak in Eastern Europe was caused by the strain C. diphtheriae NCTC 13129. Although the gen...

    Authors: Manuel Wittchen, Tobias Busche, Andrew H. Gaspar, Ju Huck Lee, Hung Ton-That, Jörn Kalinowski and Andreas Tauch
    Citation: BMC Genomics 2018 19:82
    Content type: Research article Published on:

  21. The cuttlefish, Sepia pharaonis, is characterized by rapid growth and strong disease resistance, making it an important commercially farmed cephalopod species in the southeastern coastal regions of China. However...

    Authors: Maowang Jiang, Qingxi Han, Liting Xu, Ruibing Peng, Tao Zhang and Xiamin Jiang
    Citation: BMC Genomics 2024 25:94
    Content type: Research Published on:

  22. With the maturity of next generation sequencing technology, a huge amount of epigenomic data have been generated by several large consortia in the last decade. These plenty resources leave us the opportunity a...

    Authors: Can Wang and Shihua Zhang
    Citation: BMC Genomics 2018 19(Suppl 10):903
    Content type: Research Published on:

    This article is part of a Supplement: Volume 19 Supplement 10

  24. Pseudomonas aeruginosa (P. aeruginosa) is the most common opportunistic pathogen implicated in nosocomial infections and in chronic lung infections in cystic fibrosis patients. Ortho-phenylphenol (OPP) is an anti...

    Authors: Chantal W Nde, Hyeung-Jin Jang, Freshteh Toghrol and William E Bentley
    Citation: BMC Genomics 2008 9:473
    Content type: Research article Published on:

  25. Rice (Oryza sativa. L) is more sensitive to drought stress than other cereals, and large genotypic variation in drought tolerance (DT) exists within the cultivated rice gene pool and its wild relatives. Selective...

    Authors: Liyu Huang, Fan Zhang, Fan Zhang, Wensheng Wang, Yongli Zhou, Binying Fu and Zhikang Li
    Citation: BMC Genomics 2014 15:1026
    Content type: Research article Published on:

  26. Jilin white goose is an excellent local breed in China, with a high annual egg production and laying eggs mainly from February to July each year. The testis, as the only organ that can produce sperm, can affec...

    Authors: Yupu Song, Jingyun Ma, Qiuyuan Liu, Ichraf Mabrouk, Yuxuan Zhou, Jin Yu, Fengshuo Liu, Jingbo Wang, Zhiye Yu, Jingtao Hu and Yongfeng Sun
    Citation: BMC Genomics 2024 25:326
    Content type: Research Published on:

  28. Wheat domestication is considered as one of the most important events in the development of human civilization. Wheat spikelets have undergone significant changes during evolution under domestication, resultin...

    Authors: Hongda Zou, Raanan Tzarfati, Sariel Hübner, Tamar Krugman, Tzion Fahima, Shahal Abbo, Yehoshua Saranga and Abraham B. Korol
    Citation: BMC Genomics 2015 16:777
    Content type: Research article Published on:

  29. Cucumber, Cucumis sativus L., is an economically and nutritionally important crop of the Cucurbitaceae family and has long served as a primary model system for sex determination studies. Recently, the sequencing ...

    Authors: Shaogui Guo, Yi Zheng, Je-Gun Joung, Shiqiang Liu, Zhonghua Zhang, Oswald R Crasta, Bruno W Sobral, Yong Xu, Sanwen Huang and Zhangjun Fei
    Citation: BMC Genomics 2010 11:384
    Content type: Research article Published on:

  30. Olive orchards are threatened by a wide range of pathogens. Of these, Verticillium dahliae has been in the spotlight for its high incidence, the difficulty to control it and the few cultivars that has increased t...

    Authors: Jorge A. Ramírez-Tejero, Jaime Jiménez-Ruiz, Alicia Serrano, Angjelina Belaj, Lorenzo León, Raúl de la Rosa, Jesús Mercado-Blanco and Francisco Luque
    Citation: BMC Genomics 2021 22:229
    Content type: Research article Published on:

  31. Toxoplasma gondii is a globally distributed protozoan parasite that establishes life-long asymptomatic infection in humans, often emerging as a life-threatening opportunistic pathogen during immunodeficiency. As ...

    Authors: Kayla L. Menard, Lijing Bu and Eric Y. Denkers
    Citation: BMC Genomics 2021 22:130
    Content type: Research article Published on:

  32. Prostate cancer is the second leading cause of cancer mortality among US men. Epidemiological evidence suggests that high vitamin D status protects men from prostate cancer and the active form of vitamin D, 1α...

    Authors: Pavlo L Kovalenko, Zhentao Zhang, Min Cui, Steve K Clinton and James C Fleet
    Citation: BMC Genomics 2010 11:26
    Content type: Research article Published on:

  33. The annotation of many genomes is limited, with a large proportion of identified genes lacking functional assignments. The construction of gene co-expression networks is a powerful approach that presents a way...

    Authors: Dragana Stanley, Nathan S Watson-Haigh, Christopher JE Cowled and Robert J Moore
    Citation: BMC Genomics 2013 14:13
    Content type: Research article Published on:

  34. An organism can respond to changing environmental conditions by adjusting gene regulation and by forming alternative phenotypes. In nematodes, these mechanisms are coupled because many species will form dauer ...

    Authors: Amit Sinha, Ralf J Sommer and Christoph Dieterich
    Citation: BMC Genomics 2012 13:254
    Content type: Research article Published on:

  35. Chrysanthemum is one kind of ornamental plant well-known and widely used in the world. However, its quality and production were severely affected by low temperature conditions in winter and early spring period...

    Authors: Ke Wang, Zhen-yu Bai, Qian-yu Liang, Qing-lin Liu, Lei Zhang, Yuan-zhi Pan, Guang-li Liu, Bei-bei Jiang, Fan Zhang and Yin Jia
    Citation: BMC Genomics 2018 19:319
    Content type: Research article Published on:

  36. The clinical symptoms of malaria are caused by the asexual replication of Plasmodium parasites in the blood of the vertebrate host. To spread to new hosts, however, the malaria parasite must differentiate into se...

    Authors: Lee M. Yeoh, Christopher D. Goodman, Vanessa Mollard, Geoffrey I. McFadden and Stuart A. Ralph
    Citation: BMC Genomics 2017 18:734
    Content type: Research article Published on:

  38. Plasmodium falciparum, the causative agent of severe human malaria, has evolved to become resistant to previously successful antimalarial chemotherapies, most notably chloroquine and the antifolates. The prevalen...

    Authors: John VW Becker, Linda Mtwisha, Bridget G Crampton, Stoyan Stoychev, Anna C van Brummelen, Shaun Reeksting, Abraham I Louw, Lyn-Marie Birkholtz and Dalu T Mancama
    Citation: BMC Genomics 2010 11:235
    Content type: Research article Published on:

  39. Alternative splicing is a key mechanism underlying cellular differentiation and a driver of complexity in mammalian neuronal tissues. However, understanding of which isoforms are differentially used or express...

    Authors: David J. Wright, Nicola A. L. Hall, Naomi Irish, Angela L. Man, Will Glynn, Arne Mould, Alejandro De Los Angeles, Emily Angiolini, David Swarbreck, Karim Gharbi, Elizabeth M. Tunbridge and Wilfried Haerty
    Citation: BMC Genomics 2022 23:42
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2022 23:79

  40. Phytohormones are the key factors regulating vascular development in plants, and they are also involved in tension wood (TW) formation. Although the theory of hormone distribution in TW formation is widely sup...

    Authors: Yao Xiao, Fei Yi, Juanjuan Ling, Guijuan Yang, Na Lu, Zirui Jia, Junchen Wang, Kun Zhao, Junhui Wang and Wenjun Ma
    Citation: BMC Genomics 2020 21:609
    Content type: Research article Published on:

  41. Kalmegh (Andrographis paniculata) has been widely exploited in traditional medicine for the treatment of infectious diseases and health disorders. Ent-labdane-related diterpene (ent-LRD) specialized (i.e., second...

    Authors: Anchal Garg, Lalit Agrawal, Rajesh Chandra Misra, Shubha Sharma and Sumit Ghosh
    Citation: BMC Genomics 2015 16:659
    Content type: Research article Published on:

  42. Parasites can either respond to differences in immune defenses that exist between individual hosts plastically or, alternatively, follow a genetically canalized (“hard wired”) program of infection. Assuming th...

    Authors: Totta Ehret, Simone Spork, Christoph Dieterich, Richard Lucius and Emanuel Heitlinger
    Citation: BMC Genomics 2017 18:686
    Content type: Research article Published on:

  43. The objective of this study was to acquire a broader, more comprehensive picture of the transcriptional changes in the L. Thoracis muscle (LT) and subcutaneous fat (SF) of lambs supplemented with vitamin E. Furth...

    Authors: Laura González-Calvo, Elda Dervishi, Margalida Joy, Pilar Sarto, Roberto Martin-Hernandez, Magdalena Serrano, Jose M. Ordovás and Jorge H. Calvo
    Citation: BMC Genomics 2017 18:92
    Content type: Research Article Published on:

  44. Epigenetic modification of DNA via methylation is one of the key inventions in eukaryotic evolution. It provides a source for the switching of gene activities, the maintenance of stable phenotypes and the inte...

    Authors: Sylvain Foret, Robert Kucharski, Yvonne Pittelkow, Gabrielle A Lockett and Ryszard Maleszka
    Citation: BMC Genomics 2009 10:472
    Content type: Research article Published on:

  45. The rate of protein accretion and growth affect amino acid requirements in young animals. Differences in amino acid metabolism contribute to individual variations in growth rate. This study aimed at determinin...

    Authors: Shahram Niknafs, Marina R. S. Fortes, Sungbo Cho, John L. Black and Eugeni Roura
    Citation: BMC Genomics 2022 23:393
    Content type: Research Published on:

  46. Small molecule ligands often have multiple effects on the transcriptional program of a cell: they trigger a receptor specific response and additional, indirect responses ("side effects"). Distinguishing those ...

    Authors: Jacob J Michaelson, Saskia Trump, Susanne Rudzok, Carolin Gräbsch, Danielle J Madureira, Franziska Dautel, Juliane Mai, Sabine Attinger, Kristin Schirmer, Martin von Bergen, Irina Lehmann and Andreas Beyer
    Citation: BMC Genomics 2011 12:502
    Content type: Research article Published on:

  47. In recent years, the number of human infections caused by opportunistic pathogens has increased dramatically. Plant rhizospheres are one of the most typical natural reservoirs for these pathogens but they also...

    Authors: Peyman Alavi, Margaret R Starcher, Gerhard G Thallinger, Christin Zachow, Henry Müller and Gabriele Berg
    Citation: BMC Genomics 2014 15:482
    Content type: Research article Published on:

  48. Reproductive success is dependent on development of hypothalamic circuits involving many hormonal systems working in concert to regulate gonadal function and sexual behavior. The timing of pubertal initiation ...

    Authors: Monika M. Kaczmarek, Tamra Mendoza and Leslie P. Kozak
    Citation: BMC Genomics 2016 17:333
    Content type: Research article Published on:

  49. Trichoderma spp. are majorly composed of plant-beneficial symbionts widely used in agriculture as bio-control agents. Studying the mechanisms behind Trichoderma-derived plant benefits has yielded tangible bio-ind...

    Authors: Elizabeth A. Malinich, Ken Wang, Prasun K. Mukherjee, Michael Kolomiets and Charles M. Kenerley
    Citation: BMC Genomics 2019 20:280
    Content type: Research article Published on:

  50. Phosphorus (P) plays important roles in plant growth and development. MicroRNAs involved in P signaling have been identified in Arabidopsis and rice, but P-responsive microRNAs and their targets in soybean lea...

    Authors: Feng Xu, Qian Liu, Luying Chen, Jiebin Kuang, Thomas Walk, Jinxiang Wang and Hong Liao
    Citation: BMC Genomics 2013 14:66
    Content type: Research article Published on:

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