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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Advanced selection technologies have been developed and continually optimized to improve traits of agricultural importance; however, these methods have been primarily applied without knowledge of underlying bi...

    Authors: Nan Zhou, William R Lee and Behnam Abasht
    Citation: BMC Genomics 2015 16:195
    Content type: Research article Published on:

  2. Expansion of polyglutamine-encoding CAG trinucleotide repeats has been identified as the pathogenic mutation in nine different genes associated with neurodegenerative disorders. The majority of individuals cli...

    Authors: Stefanie L Butland, Rebecca S Devon, Yong Huang, Carri-Lyn Mead, Alison M Meynert, Scott J Neal, Soo Sen Lee, Anna Wilkinson, George S Yang, Macaire MS Yuen, Michael R Hayden, Robert A Holt, Blair R Leavitt and BF Francis Ouellette
    Citation: BMC Genomics 2007 8:126
    Content type: Research article Published on:

  3. Structural variations (SVs) have recently become a topic of great interest in the area of genetic diversity and trait regulation. As genomic sequencing technologies have rapidly advanced, longer reads have bee...

    Authors: Yueyuan Liu, Mingyue Zhang, Runze Wang, Benping Li, Yafei Jiang, Manyi Sun, Yaojun Chang and Jun Wu
    Citation: BMC Genomics 2022 23:830
    Content type: Research Published on:

  4. The function of RNA from the non-coding (the so called “dark matter”) regions of the genome has been a subject of considerable recent debate. Perhaps the most controversy is regarding the function of RNAs foun...

    Authors: Georges St Laurent, Dmitry Shtokalo, Michael R Tackett, Zhaoqing Yang, Tatyana Eremina, Claes Wahlestedt, Silvio Urcuqui-Inchima, Bernd Seilheimer, Timothy A McCaffrey and Philipp Kapranov
    Citation: BMC Genomics 2012 13:504
    Content type: Research article Published on:

  5. Cotton (Gossypium hirsutum L.) is a major fiber crop that is grown worldwide; it faces extensive damage from sap-sucking insects, including aphids and whiteflies. Genome-wide transcriptome analysis was performed ...

    Authors: Neeraj Kumar Dubey, Ridhi Goel, Alok Ranjan, Asif Idris, Sunil Kumar Singh, Sumit K Bag, Krishnappa Chandrashekar, Kapil Deo Pandey, Pradhyumna Kumar Singh and Samir V Sawant
    Citation: BMC Genomics 2013 14:241
    Content type: Research article Published on:

  6. We evaluated (a) the feasibility of whole genome cDNA-mediated Annealing, Selection, extension and Ligation (DASL) assay on formalin-fixed paraffin-embedded (FFPE) tissue and (b) whether similar conclusions ca...

    Authors: Muhammad G Kibriya, Farzana Jasmine, Shantanu Roy, Rachelle M Paul-Brutus, Maria Argos and Habibul Ahsan
    Citation: BMC Genomics 2010 11:622
    Content type: Research article Published on:

  7. Hibernation is a physiological state exploited by many animals exposed to prolonged adverse environmental conditions associated with winter. Large changes in metabolism and cellular function occur, with many s...

    Authors: Alexander Capraro, Denis O’Meally, Shafagh A. Waters, Hardip R. Patel, Arthur Georges and Paul D. Waters
    Citation: BMC Genomics 2019 20:460
    Content type: Research article Published on:

  8. Little is known about how apicomplexan parasites have evolved to infect different host species and cell types. Theileria annulata and Theileria parva invade and transform bovine leukocytes but each species favour...

    Authors: William Weir, Tülin Karagenç, Margaret Baird, Andy Tait and Brian R Shiels
    Citation: BMC Genomics 2010 11:42
    Content type: Research article Published on:

  9. The contribution of mitogen-activated protein kinase (MAPK) cascades to plant growth and development has been widely studied, but this knowledge has not yet been extended to the medicinal plant Salvia miltiorrhiz...

    Authors: Yongfeng Xie, Meiling Ding, Bin Zhang, Jie Yang, Tianlin Pei, Pengda Ma and Juane Dong
    Citation: BMC Genomics 2020 21:630
    Content type: Research article Published on:

  10. Coxiella burnetii is the causative agent of the zoonotic disease Q fever. As it is an intracellular pathogen, infection by C. burnetii requires adaptation to its eukaryotic host and in...

    Authors: Runa Kuley, Ruth Bossers-deVries, Hilde E. Smith, Mari A. Smits, Hendrik I. J. Roest and Alex Bossers
    Citation: BMC Genomics 2015 16:953
    Content type: Research article Published on:

  11. The mountain pine beetle, Dendroctonus ponderosae, is an irruptive bark beetle that causes extensive mortality to many pine species within the forests of western North America. Driven by climate change and wildfi...

    Authors: Janet X. Li, Kleinberg X. Fernandez, Carol Ritland, Sharon Jancsik, Daniel B. Engelhardt, Lauren Coombe, René L. Warren, Marco J. van Belkum, Allan L. Carroll, John C. Vederas, Joerg Bohlmann and Inanc Birol
    Citation: BMC Genomics 2023 24:390
    Content type: Research Published on:

  12. Amaranthus hypochondriacus, a grain amaranth, is a C4 plant noted by its ability to tolerate stressful conditions and produce highly nutritious seeds. These possess an optimal amino acid balance and constitute a ...

    Authors: John P Délano-Frier, Hamlet Avilés-Arnaut, Kena Casarrubias-Castillo, Gabriela Casique-Arroyo, Paula A Castrillón-Arbeláez, Luis Herrera-Estrella, Julio Massange-Sánchez, Norma A Martínez-Gallardo, Fannie I Parra-Cota, Erandi Vargas-Ortiz and María G Estrada-Hernández
    Citation: BMC Genomics 2011 12:363
    Content type: Research article Published on:

  13. Abscisic acid (ABA) can regulate the expressions of many stress-responsive genes in plants. However, in defense responses to pathogens, mounting evidence suggests that ABA plays variable roles. Little informat...

    Authors: Yan Wang, Xiang Tao, Xiao-Mei Tang, Liang Xiao, Jiao-long Sun, Xue-Feng Yan, Dan Li, Hong-Yuan Deng and Xin-Rong Ma
    Citation: BMC Genomics 2013 14:841
    Content type: Research article Published on:

  14. DNA methylation has been linked to genome regulation and dysregulation in health and disease respectively, and methods for characterizing genomic DNA methylation patterns are rapidly emerging. We have develope...

    Authors: Srinivasan Yegnasubramanian, Zhijin Wu, Michael C Haffner, David Esopi, Martin J Aryee, Raghav Badrinath, Tony L He, James D Morgan, Benilton Carvalho, Qizhi Zheng, Angelo M De Marzo, Rafael A Irizarry and William G Nelson
    Citation: BMC Genomics 2011 12:313
    Content type: Research article Published on:

  15. New generation sequencing technology has allowed investigation of the small RNA populations of flowering plants at great depth. However, little is known about small RNAs in their reproductive cells, especially...

    Authors: Robert Grant-Downton, Gael Le Trionnaire, Ralf Schmid, Josefina Rodriguez-Enriquez, Said Hafidh, Saher Mehdi, David Twell and Hugh Dickinson
    Citation: BMC Genomics 2009 10:643
    Content type: Research article Published on:

  16. Red-tail catfish (Hemibagrus wyckioides) is an important commercially farmed catfish in southern China. Males of red-tail catfish grow faster than females, suggesting that all-male catfish will produce more signi...

    Authors: Wen-Yu Wei, Yi Gong, Xin-Fen Guo, Min Liu, Yu-Lin Zhou, Zhi Li, Li Zhou, Zhong-Wei Wang and Jian-Fang Gui
    Citation: BMC Genomics 2023 24:183
    Content type: Research Published on:

  17. The acetic acid bacterium Gluconobacter oxydans 621H is characterized by its exceptional ability to incompletely oxidize a great variety of carbohydrates in the periplasm. The metabolism of this α-proteobacterium...

    Authors: Angela Kranz, Tobias Busche, Alexander Vogel, Björn Usadel, Jörn Kalinowski, Michael Bott and Tino Polen
    Citation: BMC Genomics 2018 19:24
    Content type: Research article Published on:

  18. Epidermal Growth Factor (EGF) plays an important function in the regulation of cell growth, proliferation, and differentiation by binding to its receptor (EGFR) and providing cancer cells with increased surviv...

    Authors: Franc Llorens, Manuela Hummel, Lorena Pantano, Xavier Pastor, Ana Vivancos, Ester Castillo, Heidi Mattlin, Anna Ferrer, Matthew Ingham, Marc Noguera, Robert Kofler, Juliane C Dohm, Raquel Pluvinet, Mònica Bayés, Heinz Himmelbauer, José Antonio del Rio…
    Citation: BMC Genomics 2013 14:371
    Content type: Research article Published on:

  19. Gene expression profiling is an important approach for detecting diagnostic and prognostic biomarkers, and predicting drug safety. The development of a wide range of technologies and platforms for measuring mR...

    Authors: Alison S Devonshire, Ramnath Elaswarapu and Carole A Foy
    Citation: BMC Genomics 2010 11:662
    Content type: Research article Published on:

  20. Fusarium graminearum virus 1 strain-DK21 (FgV1-DK21) is a mycovirus that confers hypovirulence to F. graminearum, which is the primary phytopathogenic fungus that causes Fusarium head blight (FHB) disease in many...

    Authors: Won Kyong Cho, Jisuk Yu, Kyung-Mi Lee, Moonil Son, Kyunghun Min, Yin-Won Lee and Kook-Hyung Kim
    Citation: BMC Genomics 2012 13:173
    Content type: Research article Published on:

  21. Bacterial panicle blight caused by the bacterium Burkholderia glumae is an emerging disease of rice in the United States. Not much is known about this disease, the disease cycle or any source of disease resistanc...

    Authors: Zenaida V Magbanua, Mark Arick II, Teresia Buza, Chuan-Yu Hsu, Kurt C Showmaker, Philippe Chouvarine, Peng Deng, Daniel G Peterson and Shien Lu
    Citation: BMC Genomics 2014 15:755
    Content type: Research article Published on:

  22. Large scale sequencing of cDNA libraries can provide profiles of genes expressed in an organism under defined biological and environmental circumstances. We have analyzed sequences of 4541 Expressed Sequence T...

    Authors: Ali N Dana, Maureen E Hillenmeyer, Neil F Lobo, Marcia K Kern, Patricia A Romans and Frank H Collins
    Citation: BMC Genomics 2006 7:119
    Content type: Research article Published on:

  23. Liver fibrosis is a wound-healing response to tissue injury and inflammation hallmarked by the extracellular matrix (ECM) protein deposition in the liver parenchyma and tissue remodelling. Different cell types...

    Authors: Maciej Migdał, Eugeniusz Tralle, Karim Abu Nahia, Łukasz Bugajski, Katarzyna Zofia Kędzierska, Filip Garbicz, Katarzyna Piwocka, Cecilia Lanny Winata and Michał Pawlak
    Citation: BMC Genomics 2021 22:904
    Content type: Research Published on:

  24. Taste and aroma, which are important organoleptic qualities of apricot (Prunus armeniaca L.) fruit, undergo rapid and substantial changes during ripening. However, the associated molecular mechanisms remain uncle...

    Authors: Qiuyun Zhang, Chao Feng, Wenhui Li, Zehui Qu, Ming Zeng and Wanpeng Xi
    Citation: BMC Genomics 2019 20:45
    Content type: Research article Published on:

  25. The impact of S. enterica colonization in cattle is highly variable and often serovar-dependent. The aim of this study was to compare the global transcriptomes of highly pathogenic bovine-adapted S. enterica sero...

    Authors: Serajus Salaheen, Seon Woo Kim, Bradd J. Haley and Jo Ann S. Van Kessel
    Citation: BMC Genomics 2022 23:498
    Content type: Research Published on:

  26. Drought stress is a prevalent abiotic stress that significantly hinders the growth and development of plants. According to studies, β-aminobutyric acid (BABA) can influence the ABA pathway through the AtIBI1 rece...

    Authors: Cong-Hua Feng, Meng-Xue Niu, Shilei Zhao, Shangjing Guo, Weilun Yin, Xinli Xia and Yanyan Su
    Citation: BMC Genomics 2023 24:473
    Content type: Research Published on:

  27. The hematopoietic stem cells (HSCs) niche of the bone marrow is comprised of HSCs, osteoblasts, endothelial cells and a stromal component of non-hematopoietic multipotent cells of mesenchymal origin named "mes...

    Authors: Enrico Pedemonte, Federica Benvenuto, Simona Casazza, Gianluigi Mancardi, Jorge R Oksenberg, Antonio Uccelli and Sergio E Baranzini
    Citation: BMC Genomics 2007 8:65
    Content type: Research article Published on:

  28. CRISPR-Cas9 screening libraries have arisen as a powerful tool to identify protein-coding (pc) and non-coding genes playing a role along different processes. In particular, the usage of a nuclease active Cas9 ...

    Authors: Carme Arnan, Sebastian Ullrich, Carlos Pulido-Quetglas, Ramil Nurtdinov, Alexandre Esteban, Joan Blanco-Fernandez, Estel Aparicio-Prat, Rory Johnson, Sílvia Pérez-Lluch and Roderic Guigó
    Citation: BMC Genomics 2022 23:402
    Content type: Research Published on:

  29. Caenorhabditis elegans can endure long periods of environmental stress by altering their development to execute a quiescent state called “dauer”. Previous work has implicated LKB1 - the causative gene in the auto...

    Authors: Pratik Kadekar, Rita Chaouni, Emily Clark, Anna Kazanets and Richard Roy
    Citation: BMC Genomics 2018 19:462
    Content type: Research article Published on:

  30. The coronatine insensitive 1 (COI1) gene is the core member of jasmonate signaling pathway, which is closely related to plant biotic and abiotic resistance. However, there have been no reports on COI1 in sugarcan...

    Authors: Tingting Sun, Yintian Meng, Guangli Cen, Aoyin Feng, Weihua Su, Yanling Chen, Chuihuai You, Youxiong Que and Yachun Su
    Citation: BMC Genomics 2022 23:38
    Content type: Research Published on:

  31. There is limited knowledge on the extent and dynamics of the mucosal response to commensal and probiotic species in the human intestinal lumen. This study aimed to identify the acute, time-dependent responses ...

    Authors: Freddy J Troost, Peter van Baarlen, Patrick Lindsey, Andrea Kodde, Willem M de Vos, Michiel Kleerebezem and Robert-Jan M Brummer
    Citation: BMC Genomics 2008 9:374
    Content type: Research article Published on:

  32. The identification of gene differential co-expression patterns between cancer stages is a newly developing method to reveal the underlying molecular mechanisms of carcinogenesis. Most researches of this subjec...

    Authors: Wen Juan Mo, Xu Ping Fu, Xiao Tian Han, Guang Yuan Yang, Ji Gang Zhang, Feng Hua Guo, Yan Huang, Yu Min Mao, Yao Li and Yi Xie
    Citation: BMC Genomics 2009 10:340
    Content type: Research article Published on:

  33. Flavonoid 3',5'-hydroxylases (F3'5'Hs) and flavonoid 3'-hydroxylases (F3'Hs) competitively control the synthesis of delphinidin and cyanidin, the precursors of blue and red anthocyanins. In most plants, F3'5'H ge...

    Authors: Luigi Falginella, Simone D Castellarin, Raffaele Testolin, Gregory A Gambetta, Michele Morgante and Gabriele Di Gaspero
    Citation: BMC Genomics 2010 11:562
    Content type: Research article Published on:

  34. Recent studies suggested that human/mammalian genomes are divided into large, discrete domains that are units of chromosome organization. CTCF, a CCCTC binding factor, has a diverse role in genome regulation i...

    Authors: Yuanyuan Li, Weichun Huang, Liang Niu, David M Umbach, Shay Covo and Leping Li
    Citation: BMC Genomics 2013 14:553
    Content type: Research article Published on:

  35. Horned beetles, in particular in the genus Onthophagus, are important models for studies on sexual selection, biological radiations, the origin of novel traits, developmental plasticity, biocontrol, conservation,...

    Authors: Jeong-Hyeon Choi, Teiya Kijimoto, Emilie Snell-Rood, Hongseok Tae, Youngik Yang, Armin P Moczek and Justen Andrews
    Citation: BMC Genomics 2010 11:703
    Content type: Research article Published on:

  37. Polyadenylation is a key regulatory step in eukaryotic gene expression and one of the major contributors of transcriptome diversity. Aberrant polyadenylation often associates with expression defects and leads ...

    Authors: Ting Ni, Yanqin Yang, Dina Hafez, Wenjing Yang, Kurtis Kiesewetter, Yoshi Wakabayashi, Uwe Ohler, Weiqun Peng and Jun Zhu
    Citation: BMC Genomics 2013 14:615
    Content type: Research article Published on:

  38. The WD40-repeat containing proteins, including DDB1–CUL4-associated factors (DCAFs), are abundant and conserved proteins that play important roles in different cellular processes including spermatogenesis. DCA...

    Authors: Bhavesh V. Mistry, Maha Alanazi, Hanae Fitwi, Olfat Al-Harazi, Mohamed Rajab, Abdullah Altorbag, Falah Almohanna, Dilek Colak and Abdullah M. Assiri
    Citation: BMC Genomics 2020 21:602
    Content type: Research article Published on:

  39. Helitrons are class-II eukaryotic transposons that transpose via a rolling circle mechanism. Due to their ability to capture and mobilize gene fragments, they play an important role in the evolution of their h...

    Authors: Raúl Castanera, Gúmer Pérez, Leticia López, Rubén Sancho, Francisco Santoyo, Manuel Alfaro, Toni Gabaldón, Antonio G Pisabarro, José A Oguiza and Lucía Ramírez
    Citation: BMC Genomics 2014 15:1071
    Content type: Research article Published on:

  40. Ophiocordyceps sinensis, a worm and fungus combined mixture which Hirsutella sinensis is parasitic on the caterpillar body, has been used as a traditional medicine or healthy food in China for ...

    Authors: Zhi-Qiang Liu, Shan Lin, Peter James Baker, Ling-Fang Wu, Xiao-Rui Wang, Hui Wu, Feng Xu, Hong-Yan Wang, Mgavi Elombe Brathwaite and Yu-Guo Zheng
    Citation: BMC Genomics 2015 16:106
    Content type: Research article Published on:

  41. In an important model for neuroscience, songbirds learn to discriminate songs they hear during tape-recorded playbacks, as demonstrated by song-specific habituation of both behavioral and neurogenomic response...

    Authors: Preethi H Gunaratne, Ya-Chi Lin, Ashley L Benham, Jenny Drnevich, Cristian Coarfa, Jayantha B Tennakoon, Chad J Creighton, Jong H Kim, Aleksandar Milosavljevic, Michael Watson, Sam Griffiths-Jones and David F Clayton
    Citation: BMC Genomics 2011 12:277
    Content type: Research article Published on:

  42. Hypoxia is an important environmental stressor in aquatic ecosystems, with increasingly impacts on global biodiversity. Benthic communities are the most sensitive parts of the coastal ecosystem to eutrophicati...

    Authors: Hongtao Nie, Huamin Wang, Kunyin Jiang and Xiwu Yan
    Citation: BMC Genomics 2020 21:318
    Content type: Research article Published on:

  43. Heat stress (HS) is a major stress event in the life of an animal, with detrimental upshots in production and health. Long-non-coding RNAs (lncRNAs) play an important role in many biological processes by trans...

    Authors: Jinhuan Dou, Flavio Schenkel, Lirong Hu, Adnan Khan, Muhammad Zahoor Khan, Ying Yu, Yajing Wang and Yachun Wang
    Citation: BMC Genomics 2021 22:122
    Content type: Research article Published on:

  44. RNA-sequencing analysis is increasingly utilized to study gene expression in non-model organisms without sequenced genomes. Aethionema arabicum (Brassicaceae) exhibits seed dimorphism as a bet-hedging strategy – ...

    Authors: Per K. I. Wilhelmsson, Jake O. Chandler, Noe Fernandez-Pozo, Kai Graeber, Kristian K. Ullrich, Waheed Arshad, Safina Khan, Johannes A. Hofberger, Karl Buchta, Patrick P. Edger, J. Chris Pires, M. Eric Schranz, Gerhard Leubner-Metzger and Stefan A. Rensing
    Citation: BMC Genomics 2019 20:95
    Content type: Research article Published on:

  45. How cells decipher the duration of an external signal into different transcriptional outcomes is poorly understood. The hormone gastrin can promote a variety of cellular responses including proliferation, diff...

    Authors: Linn-Karina M Selvik, Christina S Fjeldbo, Arnar Flatberg, Tonje S Steigedal, Kristine Misund, Endre Anderssen, Berit Doseth, Mette Langaas, Sushil Tripathi, Vidar Beisvag, Astrid Lægreid, Liv Thommesen and Torunn Bruland
    Citation: BMC Genomics 2013 14:429
    Content type: Research article Published on:

  46. Filamentous fungi are confronted with changes and limitations of their carbon source during growth in their natural habitats and during industrial applications. To survive life-threatening starvation condition...

    Authors: Benjamin M Nitsche, Thomas R Jørgensen, Michiel Akeroyd, Vera Meyer and Arthur FJ Ram
    Citation: BMC Genomics 2012 13:380
    Content type: Research article Published on:

  48. The transcriptome and its regulation bridge the genome and the phenome. Recent RNA-seq studies unveiled complex transcriptomes with previously unknown transcripts and functions. To investigate the characterist...

    Authors: Yazhou Sun, Yaqiong Wang, Yi Hu, Gong Chen and Hong Ma
    Citation: BMC Genomics 2011 12:494
    Content type: Research article Published on:

  49. Leishmania (L) are intracellular protozoan parasites that are able to survive and replicate within the harsh and potentially hostile phagolysosomal environment of mammalian mononuclear phagocytes. A complex inter...

    Authors: Fatma Z Guerfali, Dhafer Laouini, Lamia Guizani-Tabbane, Florence Ottones, Khadija Ben-Aissa, Alia Benkahla, Laurent Manchon, David Piquemal, Sondos Smandi, Ons Mghirbi, Thérèse Commes, Jacques Marti and Koussay Dellagi
    Citation: BMC Genomics 2008 9:238
    Content type: Research article Published on:

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BMC Genomics

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