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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. The TGFβ1-induced signal transduction processes involved in growth and differentiation are only partly known. The three-dimensional epithelial differentiation model, in which T84 epithelial cells are induced t...

    Authors: Kati M Juuti-Uusitalo, Katri Kaukinen, Markku Mäki, Jarno Tuimala and Heikki Kainulainen
    Citation: BMC Genomics 2006 7:279
    Content type: Research article Published on:

  2. In viticulture, rootstock genotype plays a critical role to improve scion physiology, berry quality and to adapt grapevine (Vitis vinifera L.) to different environmental conditions. This study aimed at investigat...

    Authors: A. Zombardo, C. Crosatti, P. Bagnaresi, L. Bassolino, N. Reshef, S. Puccioni, P. Faccioli, A. Tafuri, M. Delledonne, A. Fait, P. Storchi, L. Cattivelli and E. Mica
    Citation: BMC Genomics 2020 21:468
    Content type: Research article Published on:

  3. Response of cells to changing endogenous or exogenous conditions is governed by intricate molecular interactions, or regulatory networks. To lead to appropriate responses, regulatory network should be 1) conte...

    Authors: Jia Meng, Mingzhu Lu, Yidong Chen, Shou-Jiang Gao and Yufei Huang
    Citation: BMC Genomics 2010 11(Suppl 3):S11
    Content type: Research Published on:

    This article is part of a Supplement: Volume 11 Supplement 3

  4. Transcriptional control of mitochondrial metabolism is essential for cellular function. A better understanding of this process will aid the elucidation of mitochondrial disorders, in particular of the many gen...

    Authors: Robin van der Lee, Radek Szklarczyk, Jan Smeitink, Hubert J M Smeets, Martijn A. Huynen and Rutger Vogel
    Citation: BMC Genomics 2015 16:691
    Content type: Research article Published on:

  5. Sugarcane is an increasingly economically and environmentally important C4 grass, used for the production of sugar and bioethanol, a low-carbon emission fuel. Sugarcane originated from crosses of Saccharum specie...

    Authors: Flávia R Rocha, Flávia S Papini-Terzi, Milton Y Nishiyama Jr, Ricardo ZN Vêncio, Renato Vicentini, Rodrigo DC Duarte, Vicente E de Rosa Jr, Fabiano Vinagre, Carla Barsalobres, Ane H Medeiros, Fabiana A Rodrigues, Eugênio C Ulian, Sônia M Zingaretti, João A Galbiatti, Raul S Almeida, Antonio VO Figueira…
    Citation: BMC Genomics 2007 8:71
    Content type: Research article Published on:

  6. Gene expression analyses have led to a better understanding of growth control of prostate cancer cells. We and others have identified the presence of several zinc finger transcription factors in the neoplastic...

    Authors: Kurtis Eisermann, Sunpreet Tandon, Anton Bazarov, Adina Brett, Gail Fraizer and Helen Piontkivska
    Citation: BMC Genomics 2008 9:337
    Content type: Research article Published on:

  7. Plant Trihelix transcription factors, specifically bind to GT elements and play important roles in plant physiology and development. Wheat is a main cereal crop. Brachypodium distachyon is a close relative of whe...

    Authors: Chengwei Wang, Yu Wang, Qi Pan, Shoukun Chen, Cuizhu Feng, Jiangbo Hai and Haifeng Li
    Citation: BMC Genomics 2019 20:142
    Content type: Research article Published on:

  8. Somatic mutations in cancer cells affect various genomic elements disrupting important cell functions. In particular, mutations in DNA binding sites recognized by transcription factors can alter regulator bind...

    Authors: Ilya E. Vorontsov, Grigory Khimulya, Elena N. Lukianova, Daria D. Nikolaeva, Irina A. Eliseeva, Ivan V. Kulakovskiy and Vsevolod J. Makeev
    Citation: BMC Genomics 2016 17(Suppl 2):395
    Content type: Research article Published on:

    This article is part of a Supplement: Volume 17 Supplement 2

  9. DNA methylation in promoters is closely linked to downstream gene repression. However, whether DNA methylation is a cause or a consequence of gene repression remains an open question. If it is a cause, then DN...

    Authors: Yulia A Medvedeva, Abdullah M Khamis, Ivan V Kulakovskiy, Wail Ba-Alawi, Md Shariful I Bhuyan, Hideya Kawaji, Timo Lassmann, Matthias Harbers, Alistair RR Forrest and Vladimir B Bajic
    Citation: BMC Genomics 2014 15:119
    Content type: Research article Published on:

  10. GRAS, an important family of transcription factors, have played pivotal roles in regulating numerous intriguing biological processes in plant development and abiotic stress responses. Since the sequencing of t...

    Authors: Yu Fan, Jun Yan, Dili Lai, Hao Yang, Guoxing Xue, Ailing He, Tianrong Guo, Long Chen, Xiao-bin Cheng, Da-bing Xiang, Jingjun Ruan and Jianping Cheng
    Citation: BMC Genomics 2021 22:509
    Content type: Research Published on:

  11. Flavescence dorée is the most serious grapevine yellows disease in Europe. It is caused by phytoplasmas which are transmitted from grapevine to grapevine by the leafhopper Scaphoideus titanus. Differences in susc...

    Authors: Nadia Bertazzon, Paolo Bagnaresi, Vally Forte, Elisabetta Mazzucotelli, Luisa Filippin, Davide Guerra, Antonella Zechini, Luigi Cattivelli and Elisa Angelini
    Citation: BMC Genomics 2019 20:526
    Content type: Research article Published on:

  12. B-box (BBX) zinc-finger transcription factors play important roles in plant growth, development, and stress response. Although these proteins have been studied in model plants such as Arabidopsis thaliana or Oryz...

    Authors: Xiuming Zhang, Li Zhang, Miaomiao Ji, Yifei Wu, Songlin Zhang, Yanxun Zhu, Jin Yao, Zhi Li, Hua Gao and Xiping Wang
    Citation: BMC Genomics 2021 22:221
    Content type: Research article Published on:

  13. Glutamine is a major amino donor for the synthesis of amino acids, nucleotides, and other nitrogen-containing compounds in all organisms. In addition to its role in nutrition and metabolism, glutamine can also...

    Authors: Chia-Cheng Kan, Tsui-Yun Chung, Yan-An Juo and Ming-Hsiun Hsieh
    Citation: BMC Genomics 2015 16:731
    Content type: Research article Published on:

  14. DNA methylation and demethylation at CpG islands is one of the main regulatory factors that allow cells to respond to different stimuli. These regulatory mechanisms help in developing tissue without affecting ...

    Authors: Devender Arora, Jong-Eun Park, Dajeong Lim, Bong-Hwan Choi, In-Cheol Cho, Krishnamoorthy Srikanth, Jaebum Kim and Woncheoul Park
    Citation: BMC Genomics 2021 22:801
    Content type: Research article Published on:

  15. Transcription factors, including trihelix transcription factors, play vital roles in various growth and developmental processes and in abiotic stress responses in plants. The trihelix gene has been systematically...

    Authors: Kuiyin Li, Lili Duan, Yubo Zhang, Miaoxiao Shi, Songshu Chen, Mingfang Yang, Yanqing Ding, Yashu Peng, Yabing Dong, Hao Yang, Zhenhua Li, Liyi Zhang, Yu Fan and Mingjian Ren
    Citation: BMC Genomics 2021 22:738
    Content type: Research Published on:

  16. The differentiation of human bone marrow derived skeletal stem cells (known as human bone marrow stromal or mesenchymal stem cells, hMSCs) into osteoblasts involves the activation of a small number of well-des...

    Authors: Natalie A. Twine, Linda Harkness, Moustapha Kassem and Marc R. Wilkins
    Citation: BMC Genomics 2016 17:872
    Content type: Research article Published on:

  17. Transmitted by the whitefly Bemisia tabaci, tomato yellow leaf curly virus (TYLCV) has posed serious threats to plant growth and development. Plant innate immune systems against various threats involve WRKY Group...

    Authors: Ying Huang, Meng-Yao Li, Peng Wu, Zhi-Sheng Xu, Feng Que, Feng Wang and Ai-Sheng Xiong
    Citation: BMC Genomics 2016 17:788
    Content type: Research article Published on:

  18. Wing discs of B. mori are transformed to pupal wings during the larva-to-pupa metamorphosis with dramatic morphological and structural changes. To understand these changes at a transcriptional level, RNA-seq of t...

    Authors: Jun Ou, Hui-Min Deng, Si-Chun Zheng, Li-Hua Huang, Qi-Li Feng and Lin Liu
    Citation: BMC Genomics 2014 15:820
    Content type: Research article Published on:

  19. Rice represents one the most important foods all over the world. In Europe, Italy is the first rice producer and Italian production is driven by tradition and quality. All main rice grain quality traits, like ...

    Authors: Chiara Biselli, Paolo Bagnaresi, Daniela Cavalluzzo, Simona Urso, Francesca Desiderio, Gabriele Orasen, Alberto Gianinetti, Federico Righettini, Massimo Gennaro, Rosaria Perrini, Manel Ben Hassen, Gian Attilio Sacchi, Luigi Cattivelli and Giampiero Valè
    Citation: BMC Genomics 2015 16:1091
    Content type: Research article Published on:

  20. Wheat is one of the most widely planted crops worldwide. The heading date is important for wheat environmental adaptability, as it not only controls flowering time but also determines the yield component in te...

    Authors: Yuxin Yang, Xueying Zhang, Lifen Wu, Lichao Zhang, Guoxiang Liu, Chuan Xia, Xu Liu and Xiuying Kong
    Citation: BMC Genomics 2021 22:468
    Content type: Research article Published on:

  21. Roberts syndrome (RBS) is a human developmental disorder caused by mutations in the cohesin acetyltransferase ESCO2. We previously reported that mTORC1 signaling was depressed and overall translation was reduc...

    Authors: Baoshan Xu, Madelaine Gogol, Karin Gaudenz and Jennifer L. Gerton
    Citation: BMC Genomics 2016 17:25
    Content type: Research article Published on:

  22. Cassava plants (Manihot esculenta Crantz) have obvious abscission zone (AZ) structures in their leaf pulvinus-petioles. Cassava leaf abscission can be triggered by either 17 days of water-deficit stress or 4 days...

    Authors: Wenbin Liao, Yayun Li, Yiling Yang, Gan Wang and Ming Peng
    Citation: BMC Genomics 2016 17:538
    Content type: Research article Published on:

  23. Seedless grapes are greatly appreciated for fresh and dry fruit consumption. Parthenocarpy and stenospermocarpy have been described as the main phenomena responsible for seedlessness in Vitis vinifera. However, t...

    Authors: Chinedu Charles Nwafor, Ivana Gribaudo, Anna Schneider, Ron Wehrens, Maria Stella Grando and Laura Costantini
    Citation: BMC Genomics 2014 15:1030
    Content type: Research article Published on:

  24. High throughput sequencing has enabled the interrogation of the transcriptomic landscape of glucagon-secreting alpha cells, insulin-secreting beta cells, and somatostatin-secreting delta cells. These approache...

    Authors: Alex M. Mawla, Talitha van der Meulen and Mark O. Huising
    Citation: BMC Genomics 2023 24:202
    Content type: Research Published on:

  26. Theobroma cacao is a major source of flavonoids such as catechins and their monomers proanthocyanidins (PAs), widely studied for their potential benefits in cardiovascular diseases. Light has been shown to promot...

    Authors: Adriana M. Gallego, Luisa F. Rojas, Wilmar G. Valencia, Lucía Atehortúa, Aura I. Urrea, Andrew S. Fister, Mark J. Guiltinan, Siela N. Maximova and Natalia Pabón-Mora
    Citation: BMC Genomics 2021 22:551
    Content type: Research article Published on:

  27. The homeodomain leucine zipper (HD-Zip) transcription factor family is one of the largest plant specific superfamilies, and includes genes with roles in modulation of plant growth and response to environmental...

    Authors: Vikas Belamkar, Nathan T Weeks, Arvind K Bharti, Andrew D Farmer, Michelle A Graham and Steven B Cannon
    Citation: BMC Genomics 2014 15:950
    Content type: Research article Published on:

  28. The Nuclear Factor I (NFI) family of DNA binding proteins (also called CCAAT box transcription factors or CTF) is involved in both DNA replication and gene expression regulation. Using chromatin immuno-precipi...

    Authors: Milos Pjanic, Christoph D Schmid, Armelle Gaussin, Giovanna Ambrosini, Jozef Adamcik, Petar Pjanic, Genta Plasari, Jan Kerschgens, Giovani Dietler, Philipp Bucher and Nicolas Mermod
    Citation: BMC Genomics 2013 14:99
    Content type: Research article Published on:

  29. Bovine tuberculosis (bTB) is a disease with major implications for animal welfare and productivity, as well as having the potential for zoonotic transmission. In Great Britain (GB) alone, controlling bTB costs...

    Authors: Paul Golby, Javier Nunez, Adam Witney, Jason Hinds, Michael A Quail, Stephen Bentley, Simon Harris, Noel Smith, R Glyn Hewinson and Stephen V Gordon
    Citation: BMC Genomics 2013 14:710
    Content type: Research article Published on:

  30. With the sequence of the Plasmodium falciparum genome and several global mRNA and protein life cycle expression profiling projects now completed, elucidating the underlying networks of transcriptional control imp...

    Authors: Jason A Young, Jeffery R Johnson, Chris Benner, S Frank Yan, Kaisheng Chen, Karine G Le Roch, Yingyao Zhou and Elizabeth A Winzeler
    Citation: BMC Genomics 2008 9:70
    Content type: Research article Published on:

  31. Lycium barbarum and L. ruthenicum have been used as traditional medicinal plants in China and other Asian counties for centuries. However, the molecular mechanisms underlying fruit development and ripening, as we...

    Authors: Cuiping Wang, Yan Dong, Lizhen Zhu, Libin Wang, Li Yan, Mengze Wang, Qiang Zhu, Xiongxiong Nan, Yonghua Li and Jian Li
    Citation: BMC Genomics 2020 21:295
    Content type: Research article Published on:

  32. The basic leucine zipper (bZIP) transcription factor (TF) is one of the largest families of transcription factors (TFs). It is widely distributed and highly conserved in animals, plants, and microorganisms. Pr...

    Authors: Lili Duan, Zejun Mo, Yue Fan, Kuiyin Li, Mingfang Yang, Dongcheng Li, Yuzhou Ke, Qian Zhang, Feiyan Wang, Yu Fan and Renxiang Liu
    Citation: BMC Genomics 2022 23:318
    Content type: Research Published on:

  33. Carp fish, rohu (Labeo rohita Ham.) is important freshwater aquaculture species of South-East Asia having seasonal reproductive rhythm. There is no holistic study at transcriptome level revealing key candidate ge...

    Authors: Sarika Jaiswal, Samiran Nandi, Mir Asif Iquebal, Rahul Singh Jasrotia, Sunita Patra, Gayatri Mishra, Uday Kumar Udit, Dinesh Kumar Sahu, U. B. Angadi, Prem Kumar Meher, Padmanav Routray, Jitendra Kumar Sundaray, Dhananjay Kumar Verma, Paramananda Das, Pallipuram Jayasankar, Anil Rai…
    Citation: BMC Genomics 2021 22:685
    Content type: Research Published on:

  35. Host immune function can contribute to numerous ecological/evolutionary processes. Ecoimmunological studies, however, typically use one/few phenotypic immune assays and thus do not consider the complexity of t...

    Authors: Otto Seppälä, Jean-Claude Walser, Teo Cereghetti, Katri Seppälä, Tiina Salo and Coen M. Adema
    Citation: BMC Genomics 2021 22:144
    Content type: Research article Published on:

  37. This descriptive study of the abdominal fat transcriptome takes advantage of two experimental lines of meat-type chickens (Gallus domesticus), which were selected over seven generations for a large difference in ...

    Authors: Christopher W Resnyk, Wilfrid Carré, Xiaofei Wang, Tom E Porter, Jean Simon, Elisabeth Le Bihan-Duval, Michael J Duclos, Sam E Aggrey and Larry A Cogburn
    Citation: BMC Genomics 2013 14:557
    Content type: Research article Published on:

  38. The orphan nuclear receptor TR4 (human testicular receptor 4 or NR2C2) plays a pivotal role in a variety of biological and metabolic processes. With no known ligand and few known target genes, the mode of TR4 ...

    Authors: Henriette O'Geen, Yu-Hsuan Lin, Xiaoqin Xu, Lorigail Echipare, Vitalina M Komashko, Daniel He, Seth Frietze, Osamu Tanabe, Lihong Shi, Maureen A Sartor, James D Engel and Peggy J Farnham
    Citation: BMC Genomics 2010 11:689
    Content type: Research article Published on:

  39. Loss of pancreatic insulin-secreting β-cells due to metabolic or autoimmune damage leads to the development of diabetes. The discovery that α-cells can be efficiently reprogrammed into insulin-secreting cells ...

    Authors: Daniel Oropeza, Valentina Cigliola, Agustín Romero, Simona Chera, Santiago A. Rodríguez-Seguí and Pedro L. Herrera
    Citation: BMC Genomics 2021 22:585
    Content type: Research Published on:

  40. WRKY genes, as the most pivotal transcription factors in plants, play the indispensable roles in regulating various physiological processes, including plant growth and development as well as in response to str...

    Authors: Hong Yue, Meng Wang, Siyan Liu, Xianghong Du, Weining Song and Xiaojun Nie
    Citation: BMC Genomics 2016 17:343
    Content type: Research article Published on:

  41. The late blight pathogen Phytophthora infestans can attack both potato foliage and tubers. Although interaction transcriptome dynamics between potato foliage and various pathogens have been reported, no transcrip...

    Authors: Liangliang Gao, Zheng Jin Tu, Benjamin P Millett and James M Bradeen
    Citation: BMC Genomics 2013 14:340
    Content type: Research article Published on:

  42. The food spoilage yeast species Zygosaccharomyces bailii exhibits an extraordinary capacity to tolerate weak acids, in particular acetic acid. In Saccharomyces cerevisiae, the transcription factor Haa1 (ScHaa1) i...

    Authors: Margarida Palma, Paulo Jorge Dias, Filipa de Canaveira Roque, Laura Luzia, Joana Fernandes Guerreiro and Isabel Sá-Correia
    Citation: BMC Genomics 2017 18:75
    Content type: Research Article Published on:

  43. Exposure of the budding Saccharomyces cerevisiae to an alkaline environment produces a robust transcriptional response involving hundreds of genes. Part of this response is triggered by an almost immediate burst ...

    Authors: Alicia Roque, Silvia Petrezsélyová, Albert Serra-Cardona and Joaquín Ariño
    Citation: BMC Genomics 2016 17:662
    Content type: Research article Published on:

  44. The epigenetic regulator Histone Deacetylase 1 (Hdac1) is required for specification and patterning of neurones and myelinating glia during development of the vertebrate central nervous system (CNS). This co-o...

    Authors: Michael RM Harrison, Aristophanes S Georgiou, Herman P Spaink and Vincent T Cunliffe
    Citation: BMC Genomics 2011 12:24
    Content type: Research article Published on:

  45. The trihelix family of transcription factors plays essential roles in the growth, development, and abiotic stress response of plants. Although several studies have been performed on the trihelix gene family in...

    Authors: Kuiyin Li, Yue Fan, Guangyi Zhou, Xiaojuan Liu, Songshu Chen, Xiangcai Chang, Wenqiang Wu, Lili Duan, Maoxing Yao, Rui Wang, Zili Wang, Mingfang Yang, Yanqing Ding, Mingjian Ren, Yu Fan and Liyi Zhang
    Citation: BMC Genomics 2022 23:499
    Content type: Research Published on:

  46. European eel is a panmictic species, whose decline has been recorded since the last 20 years. Among human-induced environmental factors of decline, the impact of water dams during species migration is question...

    Authors: Tomasz Podgorniak, Massimo Milan, Jose Marti Pujolar, Gregory E Maes, Luca Bargelloni, Eric De Oliveira, Fabien Pierron and Francoise Daverat
    Citation: BMC Genomics 2015 16:378
    Content type: Research article Published on:

  47. Squamous promoter binding protein-like (SPL) genes encode plant-specific transcription factors (TFs) that play essential roles in modulating plant growth, development, and stress response. Pea (Pisum sativum L.) ...

    Authors: Long Li, Jian bo Xu, Zhi wen Zhu, Rui Ma, Xiao zong Wu and Yu ke Geng
    Citation: BMC Genomics 2024 25:539
    Content type: Research Published on:

  49. Fluctuations in temperature occur naturally during plant growth and reproduction. However, in the hot summers this variation may become stressful and damaging for the molecular mechanisms involved in proper ce...

    Authors: Craita E Bita, Sara Zenoni, Wim H Vriezen, Celestina Mariani, Mario Pezzotti and Tom Gerats
    Citation: BMC Genomics 2011 12:384
    Content type: Research article Published on:

  50. Recently developed genome resources in Salmonid fish provides tools for studying the genomics underlying a wide range of properties including life history trait variation in the wild, economically important tr...

    Authors: Teshome Dagne Mulugeta, Torfinn Nome, Thu-Hien To, Manu Kumar Gundappa, Daniel J. Macqueen, Dag Inge Våge, Simen Rød Sandve and Torgeir R. Hvidsten
    Citation: BMC Genomics 2019 20:694
    Content type: Database Published on:

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BMC Genomics

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