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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Tissue regeneration is widely distributed across the tree of life. Among vertebrates, salamanders possess an exceptional ability to regenerate amputated limbs and other complex structures. Thus far, molecular ...

    Authors: Claudia M. Arenas Gómez, Ryan M. Woodcock, Jeramiah J. Smith, Randal S. Voss and Jean Paul Delgado
    Citation: BMC Genomics 2018 19:704
    Content type: Research article Published on:

  2. A major part of second generation biofuel production is the enzymatic saccharification of lignocellulosic biomass into fermentable sugars. Many fungi produce enzymes that can saccarify lignocellulose and cockt...

    Authors: Laure Ries, Steven T Pullan, Stéphane Delmas, Sunir Malla, Martin J Blythe and David B Archer
    Citation: BMC Genomics 2013 14:541
    Content type: Research article Published on:

  3. Coral reefs are expected to be severely impacted by rising seawater temperatures associated with climate change. This study used cDNA microarrays to investigate transcriptional effects of thermal stress in emb...

    Authors: Christian R Voolstra, Julia Schnetzer, Leonid Peshkin, Carly J Randall, Alina M Szmant and Mónica Medina
    Citation: BMC Genomics 2009 10:627
    Content type: Research article Published on:

  4. RNA sequencing (RNA-seq) and microarrays are two transcriptomics techniques aimed at the quantification of transcribed genes and their isoforms. Here we compare the latest Affymetrix HTA 2.0 microarray with Il...

    Authors: Petr V. Nazarov, Arnaud Muller, Tony Kaoma, Nathalie Nicot, Cristina Maximo, Philippe Birembaut, Nhan L. Tran, Gunnar Dittmar and Laurent Vallar
    Citation: BMC Genomics 2017 18:443
    Content type: Research article Published on:

  5. Developing sympathetic neurons depend on nerve growth factor (NGF) for survival and die by apoptosis after NGF withdrawal. This process requires de novo gene expression but only a small number of genes induced by...

    Authors: Mark Kristiansen, Francesca Menghi, Rosie Hughes, Mike Hubank and Jonathan Ham
    Citation: BMC Genomics 2011 12:551
    Content type: Research article Published on:

  6. Pyrethroids are neurotoxic pesticides that interact with membrane bound ion channels in neurons and disrupt nerve function. The purpose of this study was to characterize and explore changes in gene expression ...

    Authors: Joshua A Harrill, Zhen Li, Fred A Wright, Nicholas M Radio, William R Mundy, Rogelio Tornero-Velez and Kevin M Crofton
    Citation: BMC Genomics 2008 9:546
    Content type: Research article Published on:

  7. A number of studies have examined mRNA expression profiles of bovine endometrium at estrus and around the peri-implantation period of pregnancy. However, to date, these studies have been performed on the whole...

    Authors: Wiruntita Chankeaw, Sandra Lignier, Christophe Richard, Theodoros Ntallaris, Mariam Raliou, Yongzhi Guo, Damien Plassard, Claudia Bevilacqua, Olivier Sandra, Göran Andersson, Patrice Humblot and Gilles Charpigny
    Citation: BMC Genomics 2021 22:451
    Content type: Research article Published on:

    The Research article to this article has been published in BMC Genomics 2021 22:450

  8. Escherichia coli, a ubiquitous inhabitant of the gut microbiota, has been recognized as an indicator of fecal contamination and a potential reservoir for antibiotic resistance genes. Its prevalence in drinking wa...

    Authors: Oluwaseyi Samuel Olanrewaju, Lesego G Molale-Tom, Rinaldo K Kritzinger and Cornelius Carlos Bezuidenhout
    Citation: BMC Genomics 2024 25:263
    Content type: Research Published on:

  9. In Piedmontese cattle the double-muscled phenotype is an inherited condition associated to a point mutation in the myostatin (MSTN) gene. The Piedmontese MSTN missense mutation G938A is translated to C313Y myo...

    Authors: Silvia Miretti, Eugenio Martignani, Paolo Accornero and Mario Baratta
    Citation: BMC Genomics 2013 14:194
    Content type: Research article Published on:

  10. Plant growth-regulating factors (GRFs) and GRF-interacting factors (GIFs) interact with each other and collectively have important regulatory roles in plant growth, development, and stress responses. Therefore...

    Authors: Xinghao Chen, Jun Zhang, Shijie Wang, Hongyu Cai, Minsheng Yang and Yan Dong
    Citation: BMC Genomics 2024 25:74
    Content type: Research Published on:

  11. The hypercellulolytic mutant Hypocrea jecorina (anamorph Trichoderma reesei) RUT C30 is the H. jecorina strain most frequently used for cellulase fermentations and has also often been employed for basic research ...

    Authors: Verena Seidl, Christian Gamauf, Irina S Druzhinina, Bernhard Seiboth, Lukas Hartl and Christian P Kubicek
    Citation: BMC Genomics 2008 9:327
    Content type: Research article Published on:

  12. Phthalate esters like n-butyl benzyl phthalate (BBP) are widely used plasticizers. BBP has shown endocrine-disrupting properties, thus having a potential effect on hormone-sensitive tissues. The aim of this st...

    Authors: Raquel Moral, Richard Wang, Irma H Russo, Daniel A Mailo, Coral A Lamartiniere and Jose Russo
    Citation: BMC Genomics 2007 8:453
    Content type: Research article Published on:

  13. The C2H2 zinc finger protein family plays important roles in plants. However, precisely how C2H2s function in Opisthopappus (Opisthopappus taihangensis and Opisthopappus longilobus) remains unclear.

    Authors: Xiaojuan Zhou, Ting Gao, Yimeng Zhang, Mian Han, Yuexin Shen, Yu Su, Xiaolong Feng, Qi Wu, Genlou Sun and Yiling Wang
    Citation: BMC Genomics 2024 25:385
    Content type: Research Published on:

  14. The initial stages of development depend on mRNA and proteins accumulated in the oocyte, and during these stages, certain genes are essential for fertilization, first cleavage and embryonic genome activation. ...

    Authors: Sebastien Elis, Florence Batellier, Isabelle Couty, Sandrine Balzergue, Marie-Laure Martin-Magniette, Philippe Monget, Elisabeth Blesbois and Marina S Govoroun
    Citation: BMC Genomics 2008 9:110
    Content type: Research article Published on:

  15. The renewed interest in epigenetics has led to the understanding that both the environment and individual lifestyle can directly interact with the epigenome to influence its dynamics. Epigenetic phenomena are ...

    Authors: Loris Pratx, Corinne Rancurel, Martine Da Rocha, Etienne G. J. Danchin, Philippe Castagnone-Sereno, Pierre Abad and Laetitia Perfus-Barbeoch
    Citation: BMC Genomics 2018 19:321
    Content type: Research article Published on:

  16. In the process of retrotransposition LINEs use their own machinery for copying and inserting themselves into new genomic locations, while SINEs are parasitic and require the machinery of LINEs. The exact mecha...

    Authors: Daria Grechishnikova and Maria Poptsova
    Citation: BMC Genomics 2016 17:992
    Content type: Research article Published on:

  17. The 7B-1 tomato line (Solanum lycopersicum cv. Rutgers) is a photoperiod-sensitive male-sterile mutant, with potential application in hybrid seed production. Small RNAs (sRNAs) in tomato have been mainly characte...

    Authors: Vahid Omidvar, Irina Mohorianu, Tamas Dalmay and Martin Fellner
    Citation: BMC Genomics 2015 16:878
    Content type: Research article Published on:

  18. At present five evolutionary hypotheses have been proposed to explain the great variability of the genomic GC content among and within genomes: the mutational bias, the biased gene conversion, the DNA breakpoi...

    Authors: Luisa Berná, Ankita Chaurasia, Claudia Angelini, Concetta Federico, Salvatore Saccone and Giuseppe D'Onofrio
    Citation: BMC Genomics 2012 13:174
    Content type: Research article Published on:

  19. Genomic copy number variants (CNVs) involving >1 kb of DNA have recently been found to be widely distributed throughout the human genome. They represent a newly recognized form of DNA variation in normal popul...

    Authors: Ying Qiao, Xudong Liu, Chansonette Harvard, Sarah L Nolin, W Ted Brown, Maryam Koochek, Jeanette JA Holden, ME Suzanne Lewis and Evica Rajcan-Separovic
    Citation: BMC Genomics 2007 8:167
    Content type: Research article Published on:

  20. Pseudomonas syringae is an important plant pathogen, which could adapt many different environmental conditions. Under the nutrient-limited and other stress conditions, P. syringae produces nucleotide signal molec...

    Authors: Jun Liu, Menghao Yu, Tiyakhon Chatnaparat, Jae Hoon Lee, Yanli Tian, Baishi Hu and Youfu Zhao
    Citation: BMC Genomics 2020 21:296
    Content type: Research article Published on:

  21. Lectin receptor-like kinases (Lec-RLKs), a subfamily of RLKs, have been demonstrated to play an important role in signal transduction from cell wall to the plasma membrane during biotic stresses. Lec-RLKs incl...

    Authors: Subhankar Biswas, Raju Mondal, Akanksha Srivastava, Maitri Trivedi, Sunil Kumar Singh and Yogesh Mishra
    Citation: BMC Genomics 2022 23:480
    Content type: Research Published on:

  22. Aedes aegypti is arguably the most studied of all mosquito species in the laboratory and is the primary vector of both Dengue and Yellow Fever flaviviruses in the field. A large number of transcriptional studies ...

    Authors: Andrey A Ptitsyn, Guadalupe Reyes-Solis, Karla Saavedra-Rodriguez, Jonathan Betz, Erica L Suchman, Jonathan O Carlson and William C Black IV
    Citation: BMC Genomics 2011 12:153
    Content type: Research article Published on:

  23. Nearly 50% of crop yields are lost to pests and disease, with plants and pathogens locked in an amplified co-evolutionary process of disease outbreaks. Coffee wilt disease, caused by Fusarium xylarioides, decimat...

    Authors: Lily D. Peck, Reuben W. Nowell, Julie Flood, Matthew J. Ryan and Timothy G. Barraclough
    Citation: BMC Genomics 2021 22:404
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2021 22:514

  24. Mitochondrial genomes are the most sequenced genomes after bacterial and fungal genomic DNA. However, little information on mitogenomes is available for multiple metazoan taxa, such as Culicoides, a globally dist...

    Authors: Yoamel Milián-García, Christopher A. Hempel, Lauren A. A. Janke, Robert G. Young, Tara Furukawa-Stoffer, Aruna Ambagala, Dirk Steinke and Robert H. Hanner
    Citation: BMC Genomics 2022 23:584
    Content type: Research Published on:

  25. Guar [Cyamopsis tetragonoloba, L. Taub.] is an important industrial crop because of the commercial applications of the galactomannan gum contained in its seeds. Plant breeding programmes based on marker-assisted ...

    Authors: Omika Thakur and Gursharn Singh Randhawa
    Citation: BMC Genomics 2018 19:951
    Content type: Research article Published on:

  26. Muscle fibre hyperplasia stops in most fish when they reach approximately 50 % of their maximum body length. However, new small-diameter muscle fibres can be produced de novo in aged fish after muscle injury. Giv...

    Authors: Jerôme Montfort, Aurelie Le Cam, Jean-Charles Gabillard and Pierre-Yves Rescan
    Citation: BMC Genomics 2016 17:810
    Content type: Research article Published on:

  27. Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) infection of pregnant pigs can result in congenital infection and ultimately fetal death. Little is known about immune responses to infection at the ...

    Authors: Jamie M. Wilkinson, Hua Bao, Andrea Ladinig, Linjun Hong, Paul Stothard, Joan K. Lunney, Graham S. Plastow and John C. S. Harding
    Citation: BMC Genomics 2016 17:383
    Content type: Research article Published on:

  28. Armigeres subalbatus is a natural vector of the filarial worm Brugia pahangi, but it rapidly and proficiently kills Brugia malayi microfilariae by melanotic encapsulation. Because B. malayi and B. pahangi are mor...

    Authors: Matthew T Aliota, Jeremy F Fuchs, George F Mayhew, Cheng-Chen Chen and Bruce M Christensen
    Citation: BMC Genomics 2007 8:463
    Content type: Research article Published on:

  29. MicroRNAs (miRNAs) are a class of non-protein-coding genes that play a crucial regulatory role in mammalian development and disease. Whereas a large number of miRNAs have been annotated at the structural level...

    Authors: Agnieszka Podolska, Christian Anthon, Mads Bak, Niels Tommerup, Kerstin Skovgaard, Peter MH Heegaard, Jan Gorodkin, Susanna Cirera and Merete Fredholm
    Citation: BMC Genomics 2012 13:459
    Content type: Research article Published on:

  31. Clear cell renal cell carcinoma (ccRCC) is a malignant tumor with heterogeneous morphology and poor prognosis. This study aimed to establish a DNA methylation (DNAm)-driven gene-based prognostic model for ccRCC.

    Authors: Qiong Deng, Ye Du, Zhu Wang, Yeda Chen, Jieyan Wang, Hui Liang and Du Zhang
    Citation: BMC Genomics 2023 24:307
    Content type: Research Published on:

  32. Reaumuria trigyna is an endangered small shrub endemic to desert regions in Inner Mongolia. This dicotyledonous recretohalophyte has unique morphological characteristics that allow it to tolerate the stress impos...

    Authors: Zhen-hua Dang, Lin-lin Zheng, Jia Wang, Zhe Gao, Shu-biao Wu, Zhi Qi and Ying-chun Wang
    Citation: BMC Genomics 2013 14:29
    Content type: Research article Published on:

  33. MicroRNAs (miRNAs) are small, endogenous RNAs that play important regulatory roles in development and stress response in plants by negatively affecting gene expression post-transcriptionally. Identification of...

    Authors: Tianzuo Wang, Lei Chen, Mingui Zhao, Qiuying Tian and Wen-Hao Zhang
    Citation: BMC Genomics 2011 12:367
    Content type: Research article Published on:

  34. The olive fly, Bactrocera oleae, is the most devastating pest of cultivated olives. Its control has been traditionally based on insecticides, mainly organophosphates and pyrethroids. In recent years, the naturaly...

    Authors: Efthimia Sagri, Martin Reczko, Maria-Eleni Gregoriou, Konstantina T Tsoumani, Nikolaos E Zygouridis, Klelia D Salpea, Frank G Zalom, Jiannis Ragoussis and Kostas D Mathiopoulos
    Citation: BMC Genomics 2014 15:714
    Content type: Research article Published on:

  36. The molecular mechanisms that determine the organism's response to a variety of doses and modalities of stress factors are not well understood.

    Authors: Alexey Moskalev, Svetlana Zhikrivetskaya, George Krasnov, Mikhail Shaposhnikov, Ekaterina Proshkina, Dmitry Borisoglebsky, Anton Danilov, Darya Peregudova, Irina Sharapova, Eugenia Dobrovolskaya, Ilya Solovev, Nadezhda Zemskaya, Lyubov Shilova, Anastasia Snezhkina and Anna Kudryavtseva
    Citation: BMC Genomics 2015 16(Suppl 13):S8
    Content type: Research Published on:

    This article is part of a Supplement: Volume 16 Supplement 13

  37. Soybean is one of the most economically important crops in the world. The cotyledon is the nutrient storage area in seeds, and it is critical for seed quality and yield. Cotyledon mutants are important for the...

    Authors: Guixia Shi, Fang Huang, Yu Gong, Guangli Xu, Jingjing Yu, Zhenbin Hu, Qingsheng Cai and Deyue Yu
    Citation: BMC Genomics 2014 15:510
    Content type: Research article Published on:

  38. SNP microarrays are designed to genotype Single Nucleotide Polymorphisms (SNPs). These microarrays report hybridization of DNA fragments and therefore can be used for the purpose of detecting genomic fragments.

    Authors: Jennifer A McCann, Enrique M Muro, Claire Palmer, Gareth Palidwor, Christopher J Porter, Miguel A Andrade-Navarro and Michael A Rudnicki
    Citation: BMC Genomics 2007 8:322
    Content type: Methodology article Published on:

  39. The molecular, biochemical, and genetic mechanisms that regulate the complex metabolic network of soybean seed development determine the ultimate balance of protein, lipid, and carbohydrate stored in the matur...

    Authors: Ling Li, Manhoi Hur, Joon-Yong Lee, Wenxu Zhou, Zhihong Song, Nick Ransom, Cumhur Yusuf Demirkale, Dan Nettleton, Mark Westgate, Zebulun Arendsee, Vidya Iyer, Jackie Shanks, Basil Nikolau and Eve Syrkin Wurtele
    Citation: BMC Genomics 2015 16(Suppl 3):S9
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 16 Supplement 3

  40. The relationships between parasitoids and their insect hosts have attracted attention at two levels. First, the basic biology of host-parasitoid interactions is of fundamental interest. Second, parasitoids are...

    Authors: Qi Fang, Lei Wang, Jiaying Zhu, Yanmin Li, Qisheng Song, David W Stanley, Zunnu-raen Akhtar and Gongyin Ye
    Citation: BMC Genomics 2010 11:484
    Content type: Research article Published on:

  41. Abiotic stresses in plants include all the environmental conditions that significantly reduce yields, like drought and heat. One of the most significant effects they exert at the cellular level is the accumula...

    Authors: Marco Moroldo, Nicolas Blanchet, Harold Duruflé, Stéphane Bernillon, Thierry Berton, Olivier Fernandez, Yves Gibon, Annick Moing and Nicolas B. Langlade
    Citation: BMC Genomics 2024 25:199
    Content type: Research Published on:

  42. The Hsp 20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant clas...

    Authors: Valéria S Lopes-Caitar, Mayra CCG de Carvalho, Luana M Darben, Marcia K Kuwahara, Alexandre L Nepomuceno, Waldir P Dias, Ricardo V Abdelnoor and Francismar C Marcelino-Guimarães
    Citation: BMC Genomics 2013 14:577
    Content type: Research article Published on:

  43. Lipids are a class of molecules that play an important role in cellular structure and metabolism in all cell types. In the last few decades, it has been reported that long-chain fatty acids (FAs) are involved ...

    Authors: Aline S. M. Cesar, Luciana C. A. Regitano, Mirele D. Poleti, Sónia C. S. Andrade, Polyana C. Tizioto, Priscila S. N. Oliveira, Andrezza M. Felício, Michele L. do Nascimento, Amália S. Chaves, Dante P. D. Lanna, Rymer R. Tullio, Renata T. Nassu, James E. Koltes, Eric Fritz-Waters, Gerson B. Mourão, Adhemar Zerlotini-Neto…
    Citation: BMC Genomics 2016 17:961
    Content type: Research article Published on:

  44. Y chromosomes are responsible for the initiation of male development, male fertility, and other male-related functions in diverse species. However, Y genes are rarely characterized outside a few model species ...

    Authors: Andrew Brantley Hall, Yumin Qi, Vladimir Timoshevskiy, Maria V Sharakhova, Igor V Sharakhov and Zhijian Tu
    Citation: BMC Genomics 2013 14:273
    Content type: Research article Published on:

  45. Glyphosate has become the most widely used herbicide in the world. Therefore, the development of new varieties of glyphosate-tolerant crops is a research focus of seed companies and researchers. The glyphosate...

    Authors: Rongrong Zhai, Shenghai Ye, Guofu Zhu, Yanting Lu, Jing Ye, Faming Yu, Qiren Chu and Xiaoming Zhang
    Citation: BMC Genomics 2020 21:238
    Content type: Research article Published on:

  46. Whereas temporal gene expression in mammalian herpesviruses has been studied extensively, little is known about gene expression in fish herpesviruses. Here we report a genome-wide transcription analysis of a f...

    Authors: Steven J van Beurden, Ben PH Peeters, Peter JM Rottier, Andrew J Davison and Marc Y Engelsma
    Citation: BMC Genomics 2013 14:83
    Content type: Research article Published on:

  47. Citrus plants are commercially propagated by grafting, with the rootstock variety influencing a number of horticultural traits, including drought tolerance. Among the different rootstock varieties available fo...

    Authors: Luana P. Gonçalves, Raquel L. Boscariol Camargo, Marco Aurélio Takita, Marcos A. Machado, Walter S. dos Soares Filho and Marcio G. C. Costa
    Citation: BMC Genomics 2019 20:110
    Content type: Research article Published on:

  48. The study of the mechanisms controlling wound healing is an attractive area within the field of biology, with it having a potentially significant impact on the health sector given the current medical burden as...

    Authors: Pavel Abaffy, Silvie Tomankova, Ravindra Naraine, Mikael Kubista and Radek Sindelka
    Citation: BMC Genomics 2019 20:815
    Content type: Research article Published on:

  49. Primary hypoadrenocorticism (or Addison’s disease, AD) is an autoimmune disease that results in destruction of the adrenal cortex and consequent adrenal insufficiency. The disease has been described in purebre...

    Authors: Liza C. Gershony, Janelle M. Belanger, Marjo K. Hytönen, Hannes Lohi, Thomas R. Famula and Anita M. Oberbauer
    Citation: BMC Genomics 2020 21:833
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2020 21:898

  50. Hypertension is a complex disease with many contributory genetic and environmental factors. We aimed to identify common targets for therapy by gene expression profiling of a resistance artery taken from animal...

    Authors: T Hilton Grayson, Stephen J Ohms, Therese D Brackenbury, Kate R Meaney, Kaiman Peng, Yvonne E Pittelkow, Susan R Wilson, Shaun L Sandow and Caryl E Hill
    Citation: BMC Genomics 2007 8:404
    Content type: Research article Published on:

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  • Citation Impact 2023
    Journal Impact Factor: 3.5
    5-year Journal Impact Factor: 4.1
    Source Normalized Impact per Paper (SNIP): 1.083
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