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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 65 of 128

  1. The chance to compare patterns of differential gene expression in related ecologically distinct species can be particularly fruitful to investigate the genetics of adaptation and phenotypic plasticity. In this...

    Authors: D. De Panis, H. Dopazo, E. Bongcam-Rudloff, A. Conesa and E. Hasson
    Citation: BMC Genomics 2022 23:515
    Content type: Research Published on:

  2. Duchenne muscular dystrophy (DMD), caused by mutations in the dystrophin gene, is lethal. In contrast, dystrophin-deficient mdx mice recover due to effective regeneration of affected muscle tissue. To characteriz...

    Authors: R Turk, E Sterrenburg, EJ de Meijer, G-JB van Ommen, JT den Dunnen and PAC 't Hoen
    Citation: BMC Genomics 2005 6:98
    Content type: Research article Published on:

  4. The class Tremellomycete (Agaricomycotina) encompasses more than 380 fungi. Although there are a few edible Tremella spp., the only species with current biotechnological use is the astaxanthin-producing yeast Pha...

    Authors: Nicolás Bellora, Martín Moliné, Márcia David-Palma, Marco A. Coelho, Chris Todd Hittinger, José P. Sampaio, Paula Gonçalves and Diego Libkind
    Citation: BMC Genomics 2016 17:901
    Content type: Research article Published on:

  5. Scab, caused by the fungus Venturia inaequalis, is one of the most important diseases of cultivated apple. While a few scab resistance genes (R genes) governing qualitative resistance have been isolated and chara...

    Authors: Héloïse Bastiaanse, Yordan Muhovski, Olivier Parisi, Roberta Paris, Dominique Mingeot and Marc Lateur
    Citation: BMC Genomics 2014 15:1043
    Content type: Research article Published on:

  6. The yield of many crop plants can be substantially reduced by plant-pathogenic Xanthomonas bacteria. The infection strategy of many Xanthomonas strains is based on transcription activator-like effectors (TALEs), ...

    Authors: Annett Erkes, Stefanie Mücke, Maik Reschke, Jens Boch and Jan Grau
    Citation: BMC Genomics 2021 22:914
    Content type: Research Published on:

  7. The Sertoli cells act to induce testis differentiation and subsequent development in fetal and post-natal life which makes them key to an understanding of testis biology. As a major step towards characterisati...

    Authors: U. Soffientini, D. Rebourcet, M. H. Abel, S. Lee, G. Hamilton, P. A. Fowler, L. B. Smith and P. J. O’Shaughnessy
    Citation: BMC Genomics 2017 18:972
    Content type: Research article Published on:

  8. MicroRNAs (miRNAs) are nucleic acid regulators of many human mRNAs, and are associated with many tumorigenic processes. miRNA expression levels have been used in profiling studies, but some evidence suggests t...

    Authors: Elena Fountzilas, Andrew D Kelly, Antonio R Perez-Atayde, Jeffrey Goldsmith, Panagiotis A Konstantinopoulos, Nancy Francoeur, Mick Correll, Renee Rubio, Lan Hu, Mark C Gebhardt, John Quackenbush and Dimitrios Spentzos
    Citation: BMC Genomics 2012 13:332
    Content type: Research article Published on:

  9. Polyamines (PAs) are considered promising biostimulants that have diverse key roles during growth and stress responses in plants. Nevertheless, the molecular basis of these roles by PAs has not been completely...

    Authors: Heba Talat Ebeed
    Citation: BMC Genomics 2022 23:734
    Content type: Research Published on:

  10. Tuberculosis remains one of the leading causes of morbidity and mortality worldwide. Therefore, understanding the pathophysiology of Mycobacterium tuberculosis is imperative for developing new drugs. Post-transcr...

    Authors: Vimla Kany G. Ami, Rami Balasubramanian and Shubhada R. Hegde
    Citation: BMC Genomics 2020 21:167
    Content type: Research article Published on:

  11. Vertebrate mitochondrial genomes (mitogenomes) are 16–18 kbp double-stranded circular DNAs that encode a set of 37 genes. The arrangement of these genes and the major noncoding region is relatively conserved t...

    Authors: Yoshinori Kumazawa, Saaya Miura, Chiemi Yamada and Yasuyuki Hashiguchi
    Citation: BMC Genomics 2014 15:930
    Content type: Research article Published on:

  12. Previous studies have demonstrated the role of N6-methyladenosine (m6A) RNA methylation in various biological processes, our research is the first to elucidate its specific impact on LCAT mRNA stability and adipo...

    Authors: Xiaohuan Chao, Lijin Guo, Chutian Ye, Aijun Liu, Xiaomeng Wang, Mao Ye, Zhexia Fan, Kang Luan, Jiahao Chen, Chunlei Zhang, Manqing Liu, Bo Zhou, Xiquan Zhang, Zhenhui Li and Qingbin Luo
    Citation: BMC Genomics 2024 25:634
    Content type: Research Published on:

  13. Abdominal aortic aneurysms are a common disorder with an incompletely understood etiology. We used Illumina and Affymetrix microarray platforms to generate global gene expression profiles for both aneurysmal (...

    Authors: Guy M Lenk, Gerard Tromp, Shantel Weinsheimer, Zoran Gatalica, Ramon Berguer and Helena Kuivaniemi
    Citation: BMC Genomics 2007 8:237
    Content type: Research article Published on:

  14. The tunicate Ciona intestinalis (Enterogona, Ascidiacea), a major model system for evolutionary and developmental genetics of chordates, harbours two cryptic species. To assess the degree of intra- and inter-spec...

    Authors: Luigi Caputi, Marco Borra, Nikos Andreakis, Elio Biffali and Paolo Sordino
    Citation: BMC Genomics 2008 9:39
    Content type: Research article Published on:

  16. The major function of the ovary is to produce oocytes for fertilisation. Oocytes mature in follicles surrounded by nurturing granulosa cells and all are enclosed by a basal lamina. During growth, granulosa cel...

    Authors: Nicholas Hatzirodos, Katja Hummitzsch, Helen F Irving-Rodgers, Margaret L Harland, Stephanie E Morris and Raymond J Rodgers
    Citation: BMC Genomics 2014 15:40
    Content type: Research article Published on:

  18. Medicago sativa (alfalfa) is a low-input forage and potential bioenergy crop, and improving its yield and quality has always been a focus of the alfalfa breeding industry. Transgenic a...

    Authors: Ruimin Gao, Ryan S. Austin, Lisa Amyot and Abdelali Hannoufa
    Citation: BMC Genomics 2016 17:658
    Content type: Research article Published on:

  19. Burkholderia species play an important ecological role related to xenobiosis, the promotion of plant growth, the biocontrol of agricultural diseases, and symbiotic and non-symbiotic biological nitrogen fixation. ...

    Authors: Luiz Fernando Goda Zuleta, Claúdio de Oliveira Cunha, Fabíola Marques de Carvalho, Luciane Prioli Ciapina, Rangel Celso Souza, Fábio Martins Mercante, Sergio Miana de Faria, José Ivo Baldani, Rosangela Straliotto, Mariangela Hungria and Ana Tereza Ribeiro de Vasconcelos
    Citation: BMC Genomics 2014 15:535
    Content type: Research article Published on:

  20. Desulfovibrio vulgaris Hildenborough is a sulfate-reducing bacterium (SRB) that is intensively studied in the context of metal corrosion and heavy-metal bioremediation, and SRB populations are commonly observed i...

    Authors: Melinda E Clark, Zhili He, Alyssa M Redding, Marcin P Joachimiak, Jay D Keasling, Jizhong Z Zhou, Adam P Arkin, Aindrila Mukhopadhyay and Matthew W Fields
    Citation: BMC Genomics 2012 13:138
    Content type: Research article Published on:

  21. Thymus mongolicus (family Lamiaceae) is a Thyme subshrub with strong aroma and remarkable environmental adaptability. Limited genomic information limits the use of this plant.

    Authors: Zhenhua Dang, Ying Xu, Xin Zhang, Wentao Mi, Yuan Chi, Yunyun Tian, Yaling Liu and Weibo Ren
    Citation: BMC Genomics 2024 25:291
    Content type: Research Published on:

  22. The mechanism of latency and the ability of the cyprinid herpesvirus 3 (CyHV-3) to establish life-long infections in carp remains poorly understood. To explain the role of miRNAs in this process we applied a r...

    Authors: Michal Reichert, Anna Lukasik, Piotr Zielenkiewicz, Marek Matras, Joanna Maj-Paluch, Magdalena Stachnik and Ewa Borzym
    Citation: BMC Genomics 2019 20:46
    Content type: Research article Published on:

  24. Most molecular studies of plant stress tolerance have been performed with Arabidopsis thaliana, although it is not particularly stress tolerant and may lack protective mechanisms required to survive extreme envir...

    Authors: Yang Ping Lee, Federico M Giorgi, Marc Lohse, Kotryna Kvederaviciute, Sven Klages, Björn Usadel, Irute Meskiene, Richard Reinhardt and Dirk K Hincha
    Citation: BMC Genomics 2013 14:793
    Content type: Research article Published on:

  25. Several studies showed genome-wide DNA methylation during Arabidopsis embryogenesis and germination. Although it has been known that the change of DNA methylation mainly occurs at CHH context mediated by small RN...

    Authors: Jaehoon Lee, Sang-Yoon Shin, Sang-Kyu Lee, Kyunghyuk Park, Haechan Gill, Youbong Hyun, Choongwon Jeong, Jong-Seong Jeon, Chanseok Shin and Yeonhee Choi
    Citation: BMC Genomics 2023 24:36
    Content type: Research Published on:

  26. In a transgenic mouse model of Alzheimer disease (AD), cleavage of the amyloid precursor protein (APP) by the α-secretase ADAM10 prevented amyloid plaque formation, and alleviated cognitive deficits. Furthermo...

    Authors: Claudia Prinzen, Dietrich Trümbach, Wolfgang Wurst, Kristina Endres, Rolf Postina and Falk Fahrenholz
    Citation: BMC Genomics 2009 10:66
    Content type: Research article Published on:

  27. Grapevine (Vitis vinifera L.) is one of the most important fruit crops in the world and serves as a valuable model for fruit development in woody species. A major breakthrough in grapevine genomics was achieved i...

    Authors: Jérôme Grimplet, Anne-Françoise Adam-Blondon, Pierre-François Bert, Oliver Bitz, Dario Cantu, Christopher Davies, Serge Delrot, Mario Pezzotti, Stéphane Rombauts and Grant R Cramer
    Citation: BMC Genomics 2014 15:1077
    Content type: Methodology article Published on:

  28. Agarwood is derived from Aquilaria trees, the trade of which has come under strict control with a listing in Appendix II of the Convention on International Trade in Endangered Species of Wild Fauna and Flora. ...

    Authors: Chuan-Hung Chen, Tony Chien-Yen Kuo, Meng-Han Yang, Ting-Ying Chien, Mei-Ju Chu, Li-Chun Huang, Chien-Yu Chen, Hsiao-Feng Lo, Shih-Tong Jeng and Long-Fang O Chen
    Citation: BMC Genomics 2014 15:578
    Content type: Research article Published on:

  29. N-terminal myristoylation plays a vital role in membrane targeting and signal transduction in plant responses to environmental stress. Although N-myristoyltransferase enzymatic function is conserved across pla...

    Authors: Sheila Podell and Michael Gribskov
    Citation: BMC Genomics 2004 5:37
    Content type: Methodology article Published on:

  30. Previous studies have shown that protein kinase MoKin1 played an important role in the growth, conidiation, germination and pathogenicity in rice blast fungus, Magnaporthe oryzae. ΔMokin1 mutant showed significan...

    Authors: Lianhu Zhang, Yifan Zhang, Yankun Liu, Wenjing Miao, Jingyu Ai, Jingling Li, Song Peng, Songyan Li, Lifang Ye, Rong Zeng, Xugen Shi, Jian Ma, Yachun Lin, Weigang Kuang and Ruqiang Cui
    Citation: BMC Genomics 2024 25:449
    Content type: Research Published on:

  31. The cumulus cells (CCs) enveloping antral and ovulated oocytes have been regarded as putative source of non-invasive markers of the oocyte developmental competence. A number of studies have indeed observed a c...

    Authors: Giulia Vigone, Valeria Merico, Alessandro Prigione, Francesca Mulas, Lucia Sacchi, Matteo Gabetta, Riccardo Bellazzi, Carlo Alberto Redi, Giuliano Mazzini, James Adjaye, Silvia Garagna and Maurizio Zuccotti
    Citation: BMC Genomics 2013 14:380
    Content type: Research article Published on:

  32. Tandem amino acid repeats are characterised by the consecutive recurrence of a single amino acid. They exhibit high rates of length mutations in addition to point mutations and have been proposed to be involve...

    Authors: Riga Wu, Qingfeng Liu, Peng Zhang and Dan Liang
    Citation: BMC Genomics 2016 17:109
    Content type: Research article Published on:

  33. Broodstock nutritional programming improves the offspring utilization of plant-based diets in gilthead sea bream through changes in hepatic metabolism. Attention was initially focused on fatty acid desaturases...

    Authors: F. Naya-Català, A. Belenguer, D. Montero, S. Torrecillas, B. Soriano, J. Calduch-Giner, C. Llorens, R. Fontanillas, S. Sarih, M. J. Zamorano, M. Izquierdo and J. Pérez-Sánchez
    Citation: BMC Genomics 2023 24:670
    Content type: Research Published on:

  34. The alcohol dehydrogenase (ADH) gene family uniquely illustrates the concept of enzymogenesis. In vertebrates, tandem duplications gave rise to a multiplicity of forms that have been classified in eight enzyme...

    Authors: Emma Borràs, Ricard Albalat, Gregg Duester, Xavier Parés and Jaume Farrés
    Citation: BMC Genomics 2014 15:216
    Content type: Research article Published on:

  36. Muscle ageing contributes to both loss of functional autonomy and increased morbidity. Muscle atrophy accelerates after 50 years of age, but the mechanisms involved are complex and likely result from the alter...

    Authors: Marine Gueugneau, Cécile Coudy-Gandilhon, Ophélie Gourbeyre, Christophe Chambon, Lydie Combaret, Cécile Polge, Daniel Taillandier, Didier Attaix, Bertrand Friguet, Andrea B Maier, Gillian Butler-Browne and Daniel Béchet
    Citation: BMC Genomics 2014 15:1165
    Content type: Research article Published on:

  37. Bovine leukemia virus (BLV) infection is omnipresent in dairy herds causing direct economic losses due to trade restrictions and lymphosarcoma-related deaths. Milk production drops and increase in the culling ...

    Authors: Hugo A. Carignano, Dana L. Roldan, María J. Beribe, María A. Raschia, Ariel Amadio, Juan P. Nani, Gerónimo Gutierrez, Irene Alvarez, Karina Trono, Mario A. Poli and Marcos M. Miretti
    Citation: BMC Genomics 2018 19:142
    Content type: Research article Published on:

  38. High-throughput genotyping platforms play important roles in plant genomic studies. Cotton (Gossypium spp.) is the world’s important natural textile fiber and oil crop. Upland cotton accounts for more than 90% of...

    Authors: Caiping Cai, Guozhong Zhu, Tianzhen Zhang and Wangzhen Guo
    Citation: BMC Genomics 2017 18:654
    Content type: Research article Published on:

  39. Expressed sequence tag (EST) databases represent a valuable resource for the identification of genes in organisms with uncharacterized genomes and for development of molecular markers. One class of markers der...

    Authors: Maria Domenica Moccia, Christine Oger-Desfeux, Gabriel AB Marais and Alex Widmer
    Citation: BMC Genomics 2009 10:243
    Content type: Research article Published on:

  40. Arcidae, comprising about 260 species of ark shells, is an ecologically and economically important lineage of bivalve mollusks. Interestingly, mitochondrial genomes of several Arcidae species are 2–3 times lar...

    Authors: Ning Zhang, Yuanning Li, Kenneth M. Halanych, Lingfeng Kong and Qi Li
    Citation: BMC Genomics 2022 23:809
    Content type: Research Published on:

  41. Very little is known about manganese (Mn)-toxicity-responsive genes in citrus plants. Seedlings of ‘Xuegan’ (Citrus sinensis) and ‘Sour pummelo’ (Citrus grandis) were irrigated for 17 weeks with nutrient solution...

    Authors: Chen-Ping Zhou, Yi-Ping Qi, Xiang You, Lin-Tong Yang, Peng Guo, Xin Ye, Xin-Xing Zhou, Feng-Jiao Ke and Li-Song Chen
    Citation: BMC Genomics 2013 14:621
    Content type: Research article Published on:

  42. Bats are the natural reservoir host for a range of emerging and re-emerging viruses, including SARS-like coronaviruses, Ebola viruses, henipaviruses and Rabies viruses. However, the mechanisms responsible for ...

    Authors: Anthony T Papenfuss, Michelle L Baker, Zhi-Ping Feng, Mary Tachedjian, Gary Crameri, Chris Cowled, Justin Ng, Vijaya Janardhana, Hume E Field and Lin-Fa Wang
    Citation: BMC Genomics 2012 13:261
    Content type: Research article Published on:

  43. The mammary gland is a dynamic organ that undergoes dramatic physiological adaptations during the transition from late pregnancy to lactation. Investigation of the molecular basis of mammary development and fu...

    Authors: Amy M Paten, Elizabeth J Duncan, Sarah J Pain, Sam W Peterson, Paul R Kenyon, Hugh T Blair and Peter K Dearden
    Citation: BMC Genomics 2015 16:748
    Content type: Research article Published on:

  44. FNR homologues constitute an important class of transcription factors that control a wide range of anaerobic physiological functions in a number of bacterial species. Since FNR homologues are some of the most ...

    Authors: Joseph E. Kumka and Carl E. Bauer
    Citation: BMC Genomics 2015 16:895
    Content type: Research article Published on:

  45. Unlike mammals, zebrafish have the ability to regenerate damaged parts of their central nervous system (CNS) and regain functionality of the affected area. A better understanding of the molecular mechanisms in...

    Authors: Paula I. Fuller-Carter, Kim W. Carter, Denise Anderson, Alan R. Harvey, Keith M. Giles and Jennifer Rodger
    Citation: BMC Genomics 2015 16:591
    Content type: Research article Published on:

  46. Photorhabdus luminescens is a Gram-negative luminescent enterobacterium and a symbiote to soil nematodes belonging to the species Heterorhabditis bacteriophora. P.luminescens is simultaneously highly pathogenic t...

    Authors: Anna Münch, Lavinia Stingl, Kirsten Jung and Ralf Heermann
    Citation: BMC Genomics 2008 9:229
    Content type: Research article Published on:

  47. St. John’s wort (Hypericum perforatum L.) is a medicinal plant that produces important metabolites with antidepressant and anticancer activities. Recently gained biological information has shown that this species...

    Authors: Giulio Galla, Heiko Vogel, Timothy F Sharbel and Gianni Barcaccia
    Citation: BMC Genomics 2015 16:254
    Content type: Research article Published on:

  48. Aspergillus fumigatus is a major fungal pathogen that causes severe problems due to its increasing resistance to many therapeutic agents. Fludioxonil is a compound that triggers a lethal activation of the fungal-...

    Authors: Sebastian Schruefer, Annica Pschibul, Sarah Sze Wah Wong, Tongta Sae-Ong, Thomas Wolf, Sascha Schäuble, Gianni Panagiotou, Axel A. Brakhage, Vishukumar Aimanianda, Olaf Kniemeyer and Frank Ebel
    Citation: BMC Genomics 2023 24:684
    Content type: Research Published on:

  49. Exoribonucleases are crucial for RNA degradation in Escherichia coli but the roles of RNase R and PNPase and their potential overlap in stationary phase are not well characterized. Here, we used a genome-wide app...

    Authors: Clémentine Dressaire, Vânia Pobre, Sandrine Laguerre, Laurence Girbal, Cecilia Maria Arraiano and Muriel Cocaign-Bousquet
    Citation: BMC Genomics 2018 19:848
    Content type: Research article Published on:

  50. Monogenea (Platyhelminthes, Neodermata) are the most species-rich class within the Neodermata superclass of primarily fish parasites. Despite their economic and ecological importance, monogenean research tends...

    Authors: Jiří Vorel, Nikol Kmentová, Christoph Hahn, Petr Bureš and Martin Kašný
    Citation: BMC Genomics 2023 24:363
    Content type: Research Published on:

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BMC Genomics

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