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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 73 of 128

  1. Rhodnius prolixus has become a model for revealing the molecular bases of insect sensory biology due to the publication of its genome and its well-characterized behavioural repertoire. Gene expression modulation ...

    Authors: Jose Manuel Latorre-Estivalis, Marcos Sterkel, Sheila Ons and Marcelo Gustavo Lorenzo
    Citation: BMC Genomics 2020 21:101
    Content type: Research article Published on:

  2. The cellular machinery for cell wall synthesis and metabolism is encoded by members of large multi-gene families. Maize is both a genetic model for grass species and a potential source of lignocellulosic bioma...

    Authors: Bryan W. Penning, Tânia M. Shiga, John F. Klimek, Philip J. SanMiguel, Jacob Shreve, Jyothi Thimmapuram, Robert W. Sykes, Mark F. Davis, Maureen C. McCann and Nicholas C. Carpita
    Citation: BMC Genomics 2019 20:785
    Content type: Research article Published on:

  3. The genus Microbotryum includes plant pathogenic fungi afflicting a wide variety of hosts with anther smut disease. Microbotryum lychnidis-dioicae infects Silene latifolia and replaces host pollen with fungal spo...

    Authors: Michael H Perlin, Joelle Amselem, Eric Fontanillas, Su San Toh, Zehua Chen, Jonathan Goldberg, Sebastien Duplessis, Bernard Henrissat, Sarah Young, Qiandong Zeng, Gabriela Aguileta, Elsa Petit, Helene Badouin, Jared Andrews, Dominique Razeeq, Toni Gabaldón…
    Citation: BMC Genomics 2015 16:461
    Content type: Research article Published on:

  4. Due to the constantly growing number of sequenced microbial genomes, comparative genomics has been playing a major role in the investigation of regulatory interactions in bacteria. Regulon inference mostly rem...

    Authors: Michael J Cipriano, Pavel N Novichkov, Alexey E Kazakov, Dmitry A Rodionov, Adam P Arkin, Mikhail S Gelfand and Inna Dubchak
    Citation: BMC Genomics 2013 14:213
    Content type: Database Published on:

  5. Sturgeon species are living fossils that exhibit unique reproductive characteristics, and elucidation of the molecular processes governing the formation and quality of sturgeon eggs is crucial. However, compre...

    Authors: Natalia Kodzik, Andrzej Ciereszko, Bożena Szczepkowska, Agata Malinowska and Mariola Aleksandra Dietrich
    Citation: BMC Genomics 2024 25:451
    Content type: Research Published on:

  6. The Homeobox (Hox) family complex contains 39 genes, clustered into four groups (A-D) all expressing in sequential manner. The HOX proteins are transcriptional factors involved in regulation of pattern formation ...

    Authors: Monal Sharma, Leena Rawal, Deepak Panwar, Neeta Sehgal and Sher Ali
    Citation: BMC Genomics 2014 15:638
    Content type: Research article Published on:

  7. The genetic mechanisms of speciation and adaptation in the marine environment are not well understood. The rockfish genus Sebastes provides a unique model system for studying adaptive evolution because of the ext...

    Authors: Joseph Heras, Kelly McClintock, Shinichi Sunagawa and Andres Aguilar
    Citation: BMC Genomics 2015 16:656
    Content type: Research article Published on:

  8. Virescent mutation broadly exists in plants and is an ideal experimental material to investigate regulatory mechanisms underlying chlorophyll synthesis, photosynthesis and plant growth. Up to date, the molecul...

    Authors: Jin Gao, Yang Shi, Wei Wang, Yong-Hui Wang, Hua Yang, Qing-Hua Shi, Jian-Ping Chen, Yan-Ru Sun and Li-Wang Cai
    Citation: BMC Genomics 2021 22:498
    Content type: Research Published on:

  9. Peromyscus are the most common mammalian species in North America and are widely used in both laboratory and field studies. The deer mouse, P. maniculatus and the old-field mouse, P. polionotus, are closely relat...

    Authors: Zhenhua Shang, David J. Horovitz, Ronald H. McKenzie, Jessica L. Keisler, Michael R. Felder and Shannon W. Davis
    Citation: BMC Genomics 2020 21:622
    Content type: Research article Published on:

  10. In both beef and dairy cattle, the majority of early embryo loss occurs within the first 14 days following insemination. During this time-period, embryos are completely dependent on their maternal uterine envi...

    Authors: Aideen P Killeen, Dermot G Morris, David A Kenny, Michael P Mullen, Michael G Diskin and Sinéad M Waters
    Citation: BMC Genomics 2014 15:234
    Content type: Research article Published on:

  11. Rhizome is the storage underground stem of lotus (Nelumbo nucifera), which is enlarged before winter season and could be used for asexual propagation. In addition, the enlarged rhizome is a nutritional vegetable ...

    Authors: Dingding Cao, Rebecca Njeri Damaris, Yue Zhang, Meihui Liu, Ming Li and Pingfang Yang
    Citation: BMC Genomics 2019 20:766
    Content type: Research article Published on:

  12. Arachnids are important components of cave ecosystems and display many examples of troglomorphisms, such as blindness, depigmentation, and elongate appendages. Little is known about how the eyes of arachnids a...

    Authors: Guilherme Gainett, Jesús A. Ballesteros, Charlotte R. Kanzler, Jakob T. Zehms, John M. Zern, Shlomi Aharon, Efrat Gavish-Regev and Prashant P. Sharma
    Citation: BMC Genomics 2020 21:811
    Content type: Research article Published on:

  13. Germline genetic variation is associated with the differential expression of many human genes. The phenotypic effects of this type of variation may be important when considering susceptibility to common geneti...

    Authors: Xavier Solé, Pilar Hernández, Miguel López de Heredia, Lluís Armengol, Benjamín Rodríguez-Santiago, Laia Gómez, Christopher A Maxwell, Fernando Aguiló, Enric Condom, Jesús Abril, Luis Pérez-Jurado, Xavier Estivill, Virginia Nunes, Gabriel Capellá, Stephen B Gruber, Víctor Moreno…
    Citation: BMC Genomics 2008 9:12
    Content type: Research article Published on:

  14. Burkholderia cenocepacia belongs to a group of closely related organisms called the B. cepacia complex (Bcc) which are important opportunistic human pathogens. B. cenocepacia utilizes a mechanism of cell-cell com...

    Authors: Eoin P O'Grady, Duber F Viteri, Rebecca J Malott and Pamela A Sokol
    Citation: BMC Genomics 2009 10:441
    Content type: Research article Published on:

  15. Rhodococcus equi (R. equi) is an intracellular bacterium that affects young foals and immuno-compromised individuals causing severe pneumonia. Currently, the genetic mechanisms that co...

    Authors: Cole M. McQueen, Canaan M. Whitfield-Cargile, Kranti Konganti, Glenn P. Blodgett, Scott V. Dindot and Noah D. Cohen
    Citation: BMC Genomics 2016 17:993
    Content type: Research article Published on:

  16. Poplar anthracnose, which is one of the most important tree diseases, is primarily caused by Colletotrichum gloeosporioides, which has been detected in poplar plantations in China and is responsible for serious e...

    Authors: Fei Xing, Linxuan Zhang, Wei Ge, Haixia Fan, Chengming Tian and Fanli Meng
    Citation: BMC Genomics 2024 25:306
    Content type: Research Published on:

  17. Recent studies have indicated that low serum testosterone levels are associated with increased risk of developing hepatic steatosis; however, the mechanisms mediating this phenomenon have not been fully elucid...

    Authors: Zhaowei Cai, Xiaoling Jiang, Yongming Pan, Liang Chen, Lifan Zhang, Keyan Zhu, Yueqin Cai, Yun Ling, Fangming Chen, Xiaoping Xu and Minli Chen
    Citation: BMC Genomics 2015 16:59
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2020 21:51

  18. Alternative splicing is a mechanism for increasing protein diversity by excluding or including exons during post-transcriptional processing. Alternatively spliced proteins are particularly relevant in oncology...

    Authors: Paul J Gardina, Tyson A Clark, Brian Shimada, Michelle K Staples, Qing Yang, James Veitch, Anthony Schweitzer, Tarif Awad, Charles Sugnet, Suzanne Dee, Christopher Davies, Alan Williams and Yaron Turpaz
    Citation: BMC Genomics 2006 7:325
    Content type: Research article Published on:

  19. Systematic processing noise, which includes batch effects, is very common in microarray experiments but is often ignored despite its potential to confound or compromise experimental results. Compromised result...

    Authors: Robert R Kitchen, Vicky S Sabine, Arthur A Simen, J Michael Dixon, John MS Bartlett and Andrew H Sims
    Citation: BMC Genomics 2011 12:589
    Content type: Research article Published on:

  20. MicroRNAs (miRNAs), a class of small regulatory RNAs, have been proven to play important roles in plant growth, development and stress responses. Sweet potato (Ipomoea batatas L.) is an important food and industr...

    Authors: Zhengmei Yang, Panpan Zhu, Hunseung Kang, Lin Liu, Qinghe Cao, Jian Sun, Tingting Dong, Mingku Zhu, Zongyun Li and Tao Xu
    Citation: BMC Genomics 2020 21:164
    Content type: Research article Published on:

  21. Salinity has obvious effects on plant growth and crop productivity. The salinity-responsive mechanisms have been well-studied in differentiated organs (e.g., leaves, roots and stems), but not in unorganized ce...

    Authors: Yongxue Zhang, Yue Zhang, Juanjuan Yu, Heng Zhang, Liyue Wang, Sining Wang, Siyi Guo, Yuchen Miao, Sixue Chen, Ying Li and Shaojun Dai
    Citation: BMC Genomics 2019 20:990
    Content type: Research article Published on:

  23. The Intramuscular fat (IMF) content in meat products, which is positively correlated with meat quality, is an important trait considered by consumers. The regulation of IMF deposition is species specific. Howe...

    Authors: Hui Wang, Jincheng Zhong, Chengfu Zhang, Zhixin Chai, Hanwen Cao, Jikun Wang, Jiangjiang Zhu, Jiabo Wang and Qiumei Ji
    Citation: BMC Genomics 2020 21:347
    Content type: Research article Published on:

  24. DNA methylation has been shown to be involved in many biological processes, including X chromosome inactivation in females, paternal genomic imprinting, and others.

    Authors: Shuli Liu, Lingzhao Fang, Yang Zhou, Daniel J.A. Santos, Ruidong Xiang, Hans D. Daetwyler, Amanda J. Chamberlain, John B. Cole, Cong-jun Li, Ying Yu, Li Ma, Shengli Zhang and George E. Liu
    Citation: BMC Genomics 2019 20:888
    Content type: Research article Published on:

  25. The level of fat deposition in carcass is a crucial factor influencing meat quality. Guangling Large-Tailed (GLT) and Small-Tailed Han (STH) sheep are important local Chinese fat-tailed breeds that show distin...

    Authors: Baojun Li, Liying Qiao, Lixia An, Weiwei Wang, Jianhua Liu, Youshe Ren, Yangyang Pan, Jiongjie Jing and Wenzhong Liu
    Citation: BMC Genomics 2018 19:338
    Content type: Research article Published on:

  26. Information on the occurrence of zinc finger protein motifs in genomes is crucial to the developing field of molecular genome engineering. The knowledge of their target DNA-binding sequences is vital to develo...

    Authors: Mannu Jayakanthan, Jayaraman Muthukumaran, Sanniyasi Chandrasekar, Konika Chawla, Ankita Punetha and Durai Sundar
    Citation: BMC Genomics 2009 10:421
    Content type: Database Published on:

  27. Protein phosphorylation modulates protein function in organisms at all levels of complexity. Parasites of the Leishmania genus undergo various developmental transitions in their life cycle triggered by changes in...

    Authors: Antonio Palmeri, Pier Federico Gherardini, Polina Tsigankov, Gabriele Ausiello, Gerald F Späth, Dan Zilberstein and Manuela Helmer-Citterich
    Citation: BMC Genomics 2011 12:614
    Content type: Research article Published on:

  28. The requirements for growth and survival of the intracellular pathogen Trypanosoma cruzi within mammalian host cells are poorly understood. Transcriptional profiling of the host cell response to infection serves ...

    Authors: Jaime A Costales, Johanna P Daily and Barbara A Burleigh
    Citation: BMC Genomics 2009 10:252
    Content type: Research article Published on:

  29. Utilization of the natural genetic variation in traditional breeding programs remains a major challenge in crop plants. The identification of candidate genes underlying, or associated with, phenotypic trait QT...

    Authors: Bjorn Kloosterman, Marian Oortwijn, Jan uitdeWilligen, Twan America, Ric de Vos, Richard GF Visser and Christian WB Bachem
    Citation: BMC Genomics 2010 11:158
    Content type: Research article Published on:

  30. Although a variety of genetic changes have been implicated in causing phenotypic differences among dogs, the role of copy number variants (CNVs) and their impact on phenotypic variation is still poorly underst...

    Authors: Oscar Ramirez, Iñigo Olalde, Jonas Berglund, Belen Lorente-Galdos, Jessica Hernandez-Rodriguez, Javier Quilez, Matthew T Webster, Robert K Wayne, Carles Lalueza-Fox, Carles Vilà and Tomas Marques-Bonet
    Citation: BMC Genomics 2014 15:465
    Content type: Research article Published on:

  31. Dichlorodiphenyltrichloroethane (DDT) is a persistent estrogenic organochlorine pesticide that is a rodent hepatic tumor promoter, with inconclusive carcinogenicity in humans. We have previously reported that o,

    Authors: Naoki Kiyosawa, Joshua C Kwekel, Lyle D Burgoon, Edward Dere, Kurt J Williams, Colleen Tashiro, Brock Chittim and Timothy R Zacharewski
    Citation: BMC Genomics 2008 9:487
    Content type: Research article Published on:

  32. An absence of reliable molecular markers has hampered individualised breast cancer treatments, and a major limitation for translational research is the lack of fresh tissue. There are, however, abundant banks ...

    Authors: Mahesh Iddawela, Oscar Rueda, Jenny Eremin, Oleg Eremin, Jed Cowley, Helena M. Earl and Carlos Caldas
    Citation: BMC Genomics 2017 18:526
    Content type: Research article Published on:

  33. Skeletal muscle is composed of muscle fibers with different physiological characteristics, which plays an important role in regulating skeletal muscle metabolism, movement and body homeostasis. The type of ske...

    Authors: Chenchen Li, Yinuo Wang, Xiaohui Sun, Jinjin Yang, Yingchun Ren, Jinrui Jia, Gongshe Yang, Mingzhi Liao, Jianjun Jin and Xin’e Shi
    Citation: BMC Genomics 2024 25:400
    Content type: Research Published on:

  34. CpG islands are important regions in DNA. They usually appear at the 5’ end of genes containing GC-rich dinucleotides. When DNA methylation occurs, gene regulation is affected and it sometimes leads to carcino...

    Authors: Leah Spontaneo and Nick Cercone
    Citation: BMC Genomics 2011 12(Suppl 2):S10
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 12 Supplement 2

  35. Deep RNA sequencing (RNAseq) has opened a new horizon for understanding global gene expression. The functional annotation of non-model mammalian genomes including bovines is still poor compared to that of huma...

    Authors: Rosemarie Weikard, Frieder Hadlich and Christa Kuehn
    Citation: BMC Genomics 2013 14:789
    Content type: Research article Published on:

  36. MicroRNA-regulation of gene expression plays a key role in the development and response to biotic and abiotic stresses. Deep sequencing analyses accelerate the process of small RNA discovery in many plants and...

    Authors: Flávia Thiebaut, Clícia Grativol, Mariana Carnavale-Bottino, Cristian Antonio Rojas, Milos Tanurdzic, Laurent Farinelli, Robert A Martienssen, Adriana Silva Hemerly and Paulo Cavalcanti Gomes Ferreira
    Citation: BMC Genomics 2012 13:290
    Content type: Research article Published on:

  37. Nuclear factor Y (NF-Y) transcription factor is composed of three distinct subunits: NF-YA, NF-YB and NF-YC. Many members of NF-Y family have been reported to be key regulators in plant development, phytohormo...

    Authors: Chong Ren, Zhan Zhang, Yi Wang, Shaohua Li and Zhenchang Liang
    Citation: BMC Genomics 2016 17:605
    Content type: Research article Published on:

  38. Sugarcane (Saccharum officinarum L.) is an economically important crop, mainly due to the production of sugar and biofuel (Azevedo RA, Carvalho RF, Cia MC, & Gratão PL, Trop Plant Biol 4:42-51, 2011). Grown mainl...

    Authors: Ming Li, Zhaoxu Liang, Shanshan He, Yuan Zeng, Yan Jing, Weikuan Fang, Kaichao Wu, Guanyu Wang, Xia Ning, Lunwang Wang, Song Li, Hongwei Tan and Fang Tan
    Citation: BMC Genomics 2017 18:754
    Content type: Research article Published on:

  39. The transition from a high forage to a highly fermentable diet can induce digestive disorders in the rumen. To date, the host mechanisms that regulate the adaption to such dietary transition are largely unknow...

    Authors: K. Zhao, Y. H. Chen, G. B. Penner, M. Oba and L. L. Guan
    Citation: BMC Genomics 2017 18:976
    Content type: Research article Published on:

  40. Phlebotomine sand flies (Diptera, Nematocera) are important vectors of several pathogens, including Leishmania parasites, causing serious diseases of humans and dogs. Despite their importance as disease vectors, ...

    Authors: Valeria Petrella, Serena Aceto, Vincenza Colonna, Giuseppe Saccone, Remo Sanges, Nikola Polanska, Petr Volf, Luigi Gradoni, Gioia Bongiorno and Marco Salvemini
    Citation: BMC Genomics 2019 20:522
    Content type: Research article Published on:

  41. Tree peony (Paeonia suffruticosa Andrews) is a globally famous ornamental flower, with large and colorful flowers and abundant flower types. However, a relatively short and uniform flowering period hinders the ap...

    Authors: Shunli Wang, Jie Gao, Jingqi Xue, Yuqian Xue, Dandan Li, Yanren Guan and Xiuxin Zhang
    Citation: BMC Genomics 2019 20:572
    Content type: Research article Published on:

  43. MicroRNAs (miRNAs) exhibit important regulatory roles in the response to abiotic stresses by post-transcriptionally regulating the target gene expression in plants. However, their functions in sesame response ...

    Authors: Yujuan Zhang, Huihui Gong, Donghua Li, Rong Zhou, Fengtao Zhao, Xiurong Zhang and Jun You
    Citation: BMC Genomics 2020 21:494
    Content type: Research article Published on:

  44. The detection of selective traits in different populations can not only reveal current mechanisms of artificial selection for breeding, but also provide new insights into phenotypic variation in new varieties ...

    Authors: Huibin Shi, Taotao Li, Manchun Su, Huihui Wang, Qiao Li, Xia Lang and Youji Ma
    Citation: BMC Genomics 2023 24:50
    Content type: Research Published on:

  45. The antifungal therapy caspofungin is a semi-synthetic derivative of pneumocandin B0, a lipohexapeptide produced by the fungus Glarea lozoyensis, and was the first member of the echinocandin class approved for hu...

    Authors: Li Chen, Qun Yue, Xinyu Zhang, Meichun Xiang, Chengshu Wang, Shaojie Li, Yongsheng Che, Francisco Javier Ortiz-López, Gerald F Bills, Xingzhong Liu and Zhiqiang An
    Citation: BMC Genomics 2013 14:339
    Content type: Research article Published on:

  46. We generated the gene expression profile of the total testis from the adult C57BL/6J male mice using serial analysis of gene expression (SAGE). Two high-quality SAGE libraries containing a total of 76 854 tags...

    Authors: Petr Divina, Čestmír Vlček, Petr Strnad, Václav Pačes and Jiří Forejt
    Citation: BMC Genomics 2005 6:29
    Content type: Research article Published on:

  47. Freezing provokes severe yield losses to different fall-sown annual legumes. Understanding the molecular bases of freezing tolerance is of great interest for breeding programs. Medicago truncatula Gaertn. is an a...

    Authors: Nadim Tayeh, Nasser Bahrman, Hélène Sellier, Aurélie Bluteau, Christelle Blassiau, Joëlle Fourment, Arnaud Bellec, Frédéric Debellé, Isabelle Lejeune-Hénaut and Bruno Delbreil
    Citation: BMC Genomics 2013 14:814
    Content type: Research article Published on:

  48. The allotetraploid tobacco species Nicotiana benthamiana native to Australia has become a popular host for recombinant protein production. Although its usage grows every year, little is known on this plant’s geno...

    Authors: Matteo Schiavinato, Richard Strasser, Lukas Mach, Juliane C. Dohm and Heinz Himmelbauer
    Citation: BMC Genomics 2019 20:594
    Content type: Research article Published on:

  49. Allopolyploidy is a genomic structure wherein two or more sets of chromosomes derived from divergent parental species coexist within an organism. It is a prevalent genomic configuration in plants, as an import...

    Authors: Tatsuhiro Nomaguchi, Yoshiaki Maeda, Tomoko Yoshino, Toru Asahi, Leila Tirichine, Chris Bowler and Tsuyoshi Tanaka
    Citation: BMC Genomics 2018 19:330
    Content type: Research article Published on:

  50. The knowledge about complete bacterial genome sequences opens the way to reconstruct the qualitative topology and global connectivity of transcriptional regulatory networks. Since iron is essential for a varie...

    Authors: Iris Brune, Hendrikje Werner, Andrea T Hüser, Jörn Kalinowski, Alfred Pühler and Andreas Tauch
    Citation: BMC Genomics 2006 7:21
    Content type: Research article Published on:

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BMC Genomics

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