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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Broiler breeders fed ad libitum are characterised by multiple ovulation, which leads to poor shell quality and egg production. Multiple ovulation is controlled by food restriction in commercial flocks. However, t...

    Authors: Neil A McDerment, Peter W Wilson, David Waddington, Ian C Dunn and Paul M Hocking
    Citation: BMC Genomics 2012 13:494
  2. The pond snail Lymnaea stagnalis (L. stagnalis) has been widely used as a model organism in neurobiology, ecotoxicology, and parasitology due to the relative simplicity of its central nervous system (CNS). Howeve...

    Authors: Nancy Dong, Julia Bandura, Zhaolei Zhang, Yan Wang, Karine Labadie, Benjamin Noel, Angus Davison, Joris M. Koene, Hong-Shuo Sun, Marie-Agnès Coutellec and Zhong-Ping Feng
    Citation: BMC Genomics 2021 22:18
  3. The larvae of the greater wax moth Galleria mellonella are increasingly used (i) as mini-hosts to study pathogenesis and virulence factors of prominent bacterial and fungal human pathogens, (ii) as a whole-animal...

    Authors: Heiko Vogel, Boran Altincicek, Gernot Glöckner and Andreas Vilcinskas
    Citation: BMC Genomics 2011 12:308
  4. Deep-sea mussels living in the cold seeps with enormous biomass act as the primary consumers. They are well adapted to the extreme environment where light is absent, and hydrogen sulfide, methane, and other hy...

    Authors: Junrou Huang, Peilin Huang, Jianguo Lu, Nengyou Wu, Genmei Lin, Xilin Zhang, Hong Cao, Wei Geng, Bin Zhai, Cuiling Xu and Zhilei Sun
    Citation: BMC Genomics 2022 23(Suppl 1):311

    This article is part of a Supplement: Volume 23 Supplement 1

  5. Among the cold-adapted Antarctic notothenioid fishes, the high-latitude bald notothen Pagothenia borchgrevinki is particularly notable as the sole cryopelagic species, exploiting the coldest and iciest waters of ...

    Authors: Kevin T Bilyk and C-H Christina Cheng
    Citation: BMC Genomics 2013 14:634
  6. Mating is a complex process, which is frequently associated with behavioural and physiological changes. However, understanding of the genetic underpinnings of these changes is limited. Honey bees are both a mo...

    Authors: Fabio Manfredini, Mark J F Brown, Vanina Vergoz and Benjamin P Oldroyd
    Citation: BMC Genomics 2015 16:563
  7. Acinetobacter baumannii is a major health problem. The most common infection caused by A. baumannii is hospital acquired pneumonia, and the associated mortality rate is approximately 50 %. Neit...

    Authors: Jose Antonio Méndez, Jesús Mateos, Alejandro Beceiro, María Lopez, María Tomás, Margarita Poza and Germán Bou
    Citation: BMC Genomics 2015 16:422
  8. Squamosa promoter binding protein (SBP)-box family genes encode plant-specific transcription factors that control many important biological functions, including phase transition, inflo...

    Authors: Shu-Dong Zhang, Li-Zhen Ling and Ting-Shuang Yi
    Citation: BMC Genomics 2015 16:787
  9. Among the different tobacco products that are available on the US market, cigarette smoking is shown to be the most harmful and the effects of cigarette smoking have been well studied. US epidemiological studi...

    Authors: Subhashini Arimilli, Behrouz Madahian, Peter Chen, Kristin Marano and G. L. Prasad
    Citation: BMC Genomics 2017 18:156
  10. Pods of the vanilla orchid (Vanilla planifolia) accumulate large amounts of the flavor compound vanillin (3-methoxy, 4-hydroxy-benzaldehyde) as a glucoside during the later stages of their development. At earlier...

    Authors: Xiaolan Rao, Nick Krom, Yuhong Tang, Thomas Widiez, Daphna Havkin-Frenkel, Faith C Belanger, Richard A Dixon and Fang Chen
    Citation: BMC Genomics 2014 15:964
  11. Microbial degradation of plant cell walls and its conversion to sugars and other byproducts is a key step in the carbon cycle on Earth. In order to process heterogeneous plant-derived biomass, specialized anae...

    Authors: Bareket Dassa, Ilya Borovok, Raphael Lamed, Bernard Henrissat, Pedro Coutinho, Christopher L Hemme, Yue Huang, Jizhong Zhou and Edward A Bayer
    Citation: BMC Genomics 2012 13:210
  12. Mammalians gamete production takes place in the testis but when they exit this organ, although spermatozoa have acquired a specialized and distinct morphology, they are immotile and infertile. It is only after...

    Authors: Benoît Guyonnet, Guillemette Marot, Jean-Louis Dacheux, Marie-José Mercat, Sandrine Schwob, Florence Jaffrézic and Jean-Luc Gatti
    Citation: BMC Genomics 2009 10:369
  13. Ganoderma lucidum has been widely used as a herbal medicine for promoting health and longevity in China and other Asian countries. Polysaccharide extracts from Ganoderma lucidum have been reported to exhibit immu...

    Authors: Kun-Chieh Cheng, Hsuan-Cheng Huang, Jenn-Han Chen, Jia-Wei Hsu, Hsu-Chieh Cheng, Chern-Han Ou, Wen-Bin Yang, Shui-Tein Chen, Chi-Huey Wong and Hsueh-Fen Juan
    Citation: BMC Genomics 2007 8:411
  14. The availability of mitochondrial genomes has allowed for the resolution of numerous questions regarding the evolutionary history of fungi and other eukaryotes. In the Gibberella fujikuroi species complex, the ex...

    Authors: Gerda Fourie, Nicolaas A van der Merwe, Brenda D Wingfield, Mesfin Bogale, Bettina Tudzynski, Michael J Wingfield and Emma T Steenkamp
    Citation: BMC Genomics 2013 14:605
  15. Long non-coding RNA (lncRNA) expression data have been increasingly used in finding diagnostic and prognostic biomarkers in cancer studies. Existing differential analysis tools for RNA sequencing do not effect...

    Authors: Qian Li, Xiaoqing Yu, Ritu Chaudhary, Robbert J. C. Slebos, Christine H. Chung and Xuefeng Wang
    Citation: BMC Genomics 2019 20:539
  16. Analysis of lymphocyte cell lines revealed substantial differences in the expression of mRNA and microRNA (miRNA) among human populations. The extent of such population-associated differences in actual human t...

    Authors: Song Guo, Shuyun Huang, Xi Jiang, Haiyang Hu, Dingding Han, Carlos S. Moreno, Genevieve L. Fairbrother, David A. Hughes, Mark Stoneking and Philipp Khaitovich
    Citation: BMC Genomics 2021 22:286
  17. Jute is considered one of the most important crops for fiber production and multipurpose usages. Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) is a crucial enzyme involved in lignin biosynthesis in plants. The pot...

    Authors: Mohamed Ali Kahie, Yongjun Wang, Pingping Fang, Jianmin Qi, Rongjie Lei, Jiantang Xu, Lihui Lin, Liwu Zhang, Jisen Zhang and Aifen Tao
    Citation: BMC Genomics 2023 24:204
  18. In fish, molecular mechanisms that control follicle-enclosed oocyte progression throughout oogenesis and oocyte developmental competence acquisition remain poorly understood. Existing data in mammals have indi...

    Authors: Julien Bobe, Thaovi Nguyen, Sophie Mahé and Philippe Monget
    Citation: BMC Genomics 2008 9:499
  19. Genome-wide change of polyadenylation (polyA) sites (also known as alternative polyadenylation, APA) is emerging as an important strategy of gene regulation in response to stress in plants. But little is known...

    Authors: Chao Yan, Yupeng Wang, Tao Lyu, Zhikang Hu, Ning Ye, Weixin Liu, Jiyuan Li, Xiaohua Yao and Hengfu Yin
    Citation: BMC Genomics 2021 22:53
  20. MicroRNAs (miRNAs) play a critical role in regulating skin pigmentation. As a key economic trait, skin color directly affects the market value of rainbow trout (Oncorhynchus mykiss), however, the regulatory mecha...

    Authors: Shenji Wu, Lu Zhao, Jinqiang Huang, Yongjuan Li, Zhe Liu and Dongqiang Zhang
    Citation: BMC Genomics 2023 24:124
  21. The transcription factor farnesoid X receptor (FXR) governs bile acid and energy homeostasis, is involved in inflammation, and has protective functions in the liver. In the present study we investigated the ef...

    Authors: Ewa Szalowska, Tessa E. Pronk and Ad ACM Peijnenburg
    Citation: BMC Genomics 2015 16:822
  22. The Natterin protein family was first discovered in the venom of the medically significant fish Thalassophryne nattereri, and over the last decade natterin-like genes have been identified in various organisms, no...

    Authors: Ana Carolina Seni-Silva, Adolfo Luis Almeida Maleski, Milena Marcolino Souza, Maria Alice Pimentel Falcao, Geonildo Rodrigo Disner, Monica Lopes-Ferreira and Carla Lima
    Citation: BMC Genomics 2022 23:123
  23. Plant-specific TIFY proteins are widely found in terrestrial plants and play important roles in plant adversity responses. Although the genome of loquat at the chromosome level has been published, studies on t...

    Authors: Xulin Li, Ke Wen, Ling Zhu, Chaoying Chen, Tuo Yin, Xiuyao Yang, Ke Zhao, Yinqiang Zi, Huiyun Zhang, Xinping Luo and Hanyao Zhang
    Citation: BMC Genomics 2024 25:468
  24. Our previous study had proved that nigericin could reduce colorectal cancer cell proliferation in dose- and time-dependent manners by targeting Wnt/β-catenin signaling. To better elucidate its potential anti-c...

    Authors: Zhihua Xu, Jiaqing Shen, Shangbo Hua, Daiwei Wan, Qian Chen, Ye Han, Rui Ren, Fei Liu, Zhiyong Du, Xiaobo Guo, Jianming Shi and Qiaoming Zhi
    Citation: BMC Genomics 2019 20:716
  25. Cell contain diverse array of proteins with different molecular weight and isoelectric point (pI). The molecular weight and pI of protein play important role in determining the molecular biochemical function. ...

    Authors: Tapan Kumar Mohanta, Abdullatif Khan, Abeer Hashem, Elsayed Fathi Abd_Allah and Ahmed Al-Harrasi
    Citation: BMC Genomics 2019 20:631
  26. Colorectal cancer (CRC) is a common cancer worldwide. The main cause of death in CRC includes tumor progression and metastasis. At molecular level, these processes may be triggered by epithelial-mesenchymal tr...

    Authors: Elena A. Pudova, Anna V. Kudryavtseva, Maria S. Fedorova, Andrew R. Zaretsky, Dmitry S. Shcherbo, Elena N. Lukyanova, Anatoly Y. Popov, Asiya F. Sadritdinova, Ivan S. Abramov, Sergey L. Kharitonov, George S. Krasnov, Kseniya M. Klimina, Nadezhda V. Koroban, Nadezhda N. Volchenko, Kirill M. Nyushko, Nataliya V. Melnikova…
    Citation: BMC Genomics 2018 19(Suppl 3):113

    This article is part of a Supplement: Volume 19 Supplement 3

  27. In recent years, epigenetics has gained a central role in the understanding of the process of natural selection. It is now clear how environmental impacts on the methylome could promote methylation variability...

    Authors: Domenico Palumbo, Ornella Affinito, Antonella Monticelli and Sergio Cocozza
    Citation: BMC Genomics 2018 19:229
  28. While studies of non-model organisms are critical for many research areas, such as evolution, development, and environmental biology, they present particular challenges for both experimental and computational ...

    Authors: Justin E Paschall, Marjorie F Oleksiak, Jeffrey D VanWye, Jennifer L Roach, J Andrew Whitehead, Gerald J Wyckoff, Kevin J Kolell and Douglas L Crawford
    Citation: BMC Genomics 2004 5:96
  29. Thymidylate synthase (TS) is a critical target for cancer chemotherapy and is one of the most extensively studied biomarkers for fluoropyrimidine-based chemotherapy. In addition to its critical role in enzyme ...

    Authors: Yaguang Xi, Go Nakajima, John C Schmitz, Edward Chu and Jingfang Ju
    Citation: BMC Genomics 2006 7:68
  30. Host-range restricted poxviruses make promising vaccine vectors due to their safety profile and immunogenicity. An understanding of the host innate immune responses produced by different poxvirus vectors would...

    Authors: Kristy Offerman, Armin Deffur, Olivia Carulei, Robert Wilkinson, Nicola Douglass and Anna-Lise Williamson
    Citation: BMC Genomics 2015 16:510
  31. Sexual reproduction involving the fusion of egg and sperm is prevailing among eukaryotes. In contrast, the nematode Diploscapter coronatus, a close relative of the model Caenorhabditis elegans, reproduces parthen...

    Authors: Hideaki Hiraki, Hiroshi Kagoshima, Christopher Kraus, Philipp H. Schiffer, Yumiko Ueta, Michael Kroiher, Einhard Schierenberg and Yuji Kohara
    Citation: BMC Genomics 2017 18:478
  32. Increased availability of genome assemblies for non-model organisms has resulted in invaluable biological and genomic insight into numerous vertebrates, including teleosts. Sequencing of the Atlantic cod (Gadus m...

    Authors: Ole K. Tørresen, Marine S. O. Brieuc, Monica H. Solbakken, Elin Sørhus, Alexander J. Nederbragt, Kjetill S. Jakobsen, Sonnich Meier, Rolf B. Edvardsen and Sissel Jentoft
    Citation: BMC Genomics 2018 19:240
  33. Stripe rust (Puccinia striiformis f. sp. tritici; Pst) and powdery mildew (Blumeria graminis f. sp. tritici; Bgt) are important diseases of wheat (Triticum aestivum) worldwide. Increasingly evidences suggest that...

    Authors: Hong Zhang, Weiguo Hu, Jilei Hao, Shikai Lv, Changyou Wang, Wei Tong, Yajuan Wang, Yanzhen Wang, Xinlun Liu and Wanquan Ji
    Citation: BMC Genomics 2016 17:238
  34. Actinobacillus pleuropneumoniae is the etiological agent of porcine pleuropneumonia, a respiratory disease which causes great economic losses worldwide. Many virulence factors are involved in the pathogenesis, na...

    Authors: Vincent Deslandes, Martine Denicourt, Christiane Girard, Josée Harel, John HE Nash and Mario Jacques
    Citation: BMC Genomics 2010 11:98
  35. The co-chaperone Hop [heat shock protein (HSP) organizing protein] has been shown to act as an adaptor for protein folding and maturation, in concert with Hsp70 and Hsp90. The hop gene is of eukaryotic origin. Li...

    Authors: Libia Catalina Salinas Castellanos, Jacques Chomilier and Jorge Hernández-Torres
    Citation: BMC Genomics 2015 16:573
  36. Lateral Organ Boundaries Domain (LBD) genes arise from charophyte algae and evolve essential functions in land plants in regulating organ development and secondary metabolism. Although...

    Authors: Yimeng Kong, Peng Xu, Xinyun Jing, Longxian Chen, Laigeng Li and Xuan Li
    Citation: BMC Genomics 2017 18(Suppl 1):951

    This article is part of a Supplement: Volume 18 Supplement 1

  37. Salmonella enterica serovar Typhimurium is a gram-negative bacterium that can colonise the gut of humans and several species of food producing farm animals to cause enteric or septicaemic salmonellosis. While man...

    Authors: Arun Kommadath, Hua Bao, Adriano S Arantes, Graham S Plastow, Christopher K Tuggle, Shawn MD Bearson, Le Luo Guan and Paul Stothard
    Citation: BMC Genomics 2014 15:452
  38. Much of our current knowledge of the molecular expression profile of human embryonic stem cells (hESCs) is based on transcriptional approaches. These analyses are only partly predictive of protein expression h...

    Authors: Thomas C Schulz, Anna Maria Swistowska, Ying Liu, Andrzej Swistowski, Gail Palmarini, Sandii N Brimble, Eric Sherrer, Allan J Robins, Mahendra S Rao and Xianmin Zeng
    Citation: BMC Genomics 2007 8:478
  39. Mycoplasma hyopneumoniae, Mycoplasma flocculare and Mycoplasma hyorhinis live in swine respiratory tracts. M. flocculare, a commensal bacterium, is genetically closely related to M. hyopneumoniae, the causative a...

    Authors: Franciele Maboni Siqueira, Claudia Elizabeth Thompson, Veridiana Gomes Virginio, Taylor Gonchoroski, Luciano Reolon, Luiz Gonzaga Almeida, Marbella Maria da Fonsêca, Rangel de Souza, Francisco Prosdocimi, Irene Silveira Schrank, Henrique Bunselmeyer Ferreira, Ana Tereza Ribeiro de Vasconcelos and Arnaldo Zaha
    Citation: BMC Genomics 2013 14:175
  40. Soybean (Glycine max (L.) Merr.) is a short day plant. Its flowering and maturity time are controlled by genetic and environmental factors, as well the interaction between the two factors. Previous studies have s...

    Authors: Tingting Mao, Jinyu Li, Zixiang Wen, Tingting Wu, Cunxiang Wu, Shi Sun, Bingjun Jiang, Wensheng Hou, Wenbin Li, Qijian Song, Dechun Wang and Tianfu Han
    Citation: BMC Genomics 2017 18:415
  41. MicroRNAs play an important functional role in post-transcriptional gene regulation. One of the largest known microRNA clusters is located within the imprinted Dlk1/Gtl2 region on human chromosome 14 and mouse ch...

    Authors: Martin Kircher, Christoph Bock and Martina Paulsen
    Citation: BMC Genomics 2008 9:346
  42. Among mammals for which there is a high sequence coverage, the whole genome assembly of the dog is unique in that it predicts a low number of protein-coding genes, ~19,000, compared to the over 20,000 reported...

    Authors: Thomas Derrien, Julien Thézé, Amaury Vaysse, Catherine André, Elaine A Ostrander, Francis Galibert and Christophe Hitte
    Citation: BMC Genomics 2009 10:62
  43. Heavy metal cadmium (Cd) is a common environmental pollutant in soils, which has an negative impacts on crop growth and development. At present, cadmium has become a major soil and water heavy metal pollutant,...

    Authors: Mingyang Jian, Dazhong Zhang, Xiaoying Wang, Shuwei Wei, Yue Zhao, Qin Ding, Yucui Han and Lingjian Ma
    Citation: BMC Genomics 2020 21:343
  44. Prenatal exposure to ethanol can cause fetal alcohol spectrum disorder (FASD), a prevalent, preventable pediatric disorder. Identifying genetic risk alleles for FASD is challenging since time, dose, and freque...

    Authors: Tatiana V. Morozova, Vijay Shankar, Rebecca A. MacPherson, Trudy F. C. Mackay and Robert R. H. Anholt
    Citation: BMC Genomics 2022 23:347
  45. Sweetpotato is a typical ‘‘potassium (K+) favoring’’ food crop, which root differentiation process needs a large supply of potassium fertilizer and determine the final root yield. To further understand the regula...

    Authors: Rong Jin, Mengxiao Yan, Guanghua Li, Ming Liu, Peng Zhao, Zhe Zhang, Qiangqiang Zhang, Xiaoya Zhu, Jing Wang, Yongchao Yu, Aijun Zhang, Jun Yang and Zhonghou Tang
    Citation: BMC Genomics 2024 25:61
  46. Termites are highly eusocial insects and show a division of labor whereby morphologically distinct individuals specialize in distinct tasks. In the lower termite Reticulitermes flavipes (Rhinotermitidae), non-rep...

    Authors: Ruchira Sen, Rhitoban Raychoudhury, Yunpeng Cai, Yijun Sun, Verena-Ulrike Lietze, Drion G Boucias and Michael E Scharf
    Citation: BMC Genomics 2013 14:491

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