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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most destructive diseases of wheat (Triticum aestivum L.) worldwide. In spite of its agricultural importance, the genomics and genet...

    Authors: Chuntao Yin, Xianming Chen, Xiaojie Wang, Qingmei Han, Zhensheng Kang and Scot H Hulbert
    Citation: BMC Genomics 2009 10:626
    Content type: Research article Published on:

  2. Corynebacterium pseudotuberculosis is a pathogen classified into two biovars: C. pseudotuberculosis biovar ovis, the etiologic agent of caseous lymphadenitis and C. pseudotuberculosis ...

    Authors: Wanderson M. Silva, Edson L. Folador, Siomar C. Soares, Gustavo H. M. F. Souza, Agenor V. Santos, Cassiana S. Sousa, Henrique Figueiredo, Anderson Miyoshi, Yves Le Loir, Artur Silva and Vasco Azevedo
    Citation: BMC Genomics 2017 18:451
    Content type: Research article Published on:

  3. Phenylobacterium zucineum is a recently identified facultative intracellular species isolated from the human leukemia cell line K562. Unlike the known intracellular pathogens, P. zucineum maintains a stable assoc...

    Authors: Yingfeng Luo, Xiaoli Xu, Zonghui Ding, Zhen Liu, Bing Zhang, Zhiyu Yan, Jie Sun, Songnian Hu and Xun Hu
    Citation: BMC Genomics 2008 9:386
    Content type: Research article Published on:

  4. The soil worm Enchytraeus crypticus (Oligochaeta) is an ecotoxicology model species that, until now, was without genome or transcriptome sequence information. The present research aims at studying the transcripto...

    Authors: Marta P Castro-Ferreira, Tjalf E de Boer, John K Colbourne, Riet Vooijs, Cornelis AM van Gestel, Nico M van Straalen, Amadeu MVM Soares, Mónica JB Amorim and Dick Roelofs
    Citation: BMC Genomics 2014 15:302
    Content type: Research article Published on:

  5. Integrating plant genomics and classical breeding is a challenge for both plant breeders and molecular biologists. Marker-assisted selection (MAS) is a tool that can be used to accelerate the development of no...

    Authors: David Chagné, Charmaine M Carlisle, Céline Blond, Richard K Volz, Claire J Whitworth, Nnadozie C Oraguzie, Ross N Crowhurst, Andrew C Allan, Richard V Espley, Roger P Hellens and Susan E Gardiner
    Citation: BMC Genomics 2007 8:212
    Content type: Research article Published on:

  6. Adaptive Laboratory Evolution (ALE) has emerged as an experimental approach to discover mutations that confer phenotypic functions of interest. However, the task of finding and understanding all beneficial mut...

    Authors: Patrick V. Phaneuf, James T. Yurkovich, David Heckmann, Muyao Wu, Troy E. Sandberg, Zachary A. King, Justin Tan, Bernhard O. Palsson and Adam M. Feist
    Citation: BMC Genomics 2020 21:514
    Content type: Methodology article Published on:

  7. High temperature during grape berry ripening impairs the quality of fruits and wines. Veraison time, which marks ripening onset, is a key factor for determining climatic conditions during berry ripening. Under...

    Authors: Pietro Delfino, Sara Zenoni, Zahra Imanifard, Giovanni Battista Tornielli and Diana Bellin
    Citation: BMC Genomics 2019 20:739
    Content type: Research article Published on:

  8. Cucurbita pepo is highly susceptible to Zucchini yellow mosaic virus (ZYMV) and the resistance found in several wild species cannot be considered as complete or broad-spectrum resistance. In this study, a source ...

    Authors: C. G. Amoroso, G. Andolfo, C. Capuozzo, A. Di Donato, C. Martinez, L. Tomassoli and M. R. Ercolano
    Citation: BMC Genomics 2022 23:371
    Content type: Research Published on:

  9. Phosphorus is an important macronutrient that is severely lacking in soils. In plants, specific microRNAs (miRNAs) essential for nutrient management and the regulation of stress responses are responsible for t...

    Authors: Amanda Huen, Julia Bally and Penelope Smith
    Citation: BMC Genomics 2018 19:940
    Content type: Research article Published on:

  10. Modularity is the tendency for systems to organize into semi-independent units and can be a key to the evolution and diversification of complex biological systems. Snake venoms are highly variable modular syst...

    Authors: Andrew J. Mason, Mark J. Margres, Jason L. Strickland, Darin R. Rokyta, Mahmood Sasa and Christopher L. Parkinson
    Citation: BMC Genomics 2020 21:147
    Content type: Research Article Published on:

  11. Distinct subpopulations of neoplastic cells within tumors, including hepatocellular carcinoma (HCC), display pronounced ability to initiate new tumors and induce metastasis. Recent evidence suggests that signa...

    Authors: Marion Martin, Pierre-Benoit Ancey, Marie-Pierre Cros, Geoffroy Durand, Florence Le Calvez-Kelm, Hector Hernandez-Vargas and Zdenko Herceg
    Citation: BMC Genomics 2014 15:435
    Content type: Research article Published on:

  12. Riverine ecosystems, highly sensitive to climate change and human activities, are characterized by rapid environmental change to fluctuating water levels and siltation, causing stress on their biological compo...

    Authors: Olga Pechanova, Chuan-Yu Hsu, Joshua P Adams, Tibor Pechan, Lindsay Vandervelde, Jenny Drnevich, Sara Jawdy, Ardeshir Adeli, Jeffrey C Suttle, Amanda M Lawrence, Timothy J Tschaplinski, Armand Séguin and Cetin Yuceer
    Citation: BMC Genomics 2010 11:674
    Content type: Research article Published on:

  13. The importance of a network motif (a recurring interconnected pattern of special topology which is over-represented in a biological network) lies in its position in the hierarchy between the protein molecule a...

    Authors: Wei-Po Lee, Bing-Chiang Jeng, Tun-Wen Pai, Chin-Pei Tsai, Chang-Yung Yu and Wen-Shyong Tzou
    Citation: BMC Genomics 2006 7:89
    Content type: Research article Published on:

  14. Lingonberry (Vaccinium vitis-idaea L.), one of the least studied fruit crops in the Ericaceae family, has a dramatically increased worldwide demand due to its numerous health benefits. Genetic markers can facilit...

    Authors: Zobayer Alam, Julissa Roncal and Lourdes Peña-Castillo
    Citation: BMC Genomics 2018 19:4
    Content type: Research article Published on:

  15. Venom is one of the most important sources of regulation factors used by parasitic Hymenoptera to redirect host physiology in favour of the developing offspring. This has stimulated a number of studies, both a...

    Authors: Andrea Becchimanzi, Maddalena Avolio, Hamed Bostan, Chiara Colantuono, Flora Cozzolino, Donato Mancini, Maria Luisa Chiusano, Pietro Pucci, Silvia Caccia and Francesco Pennacchio
    Citation: BMC Genomics 2020 21:34
    Content type: Research article Published on:

  16. Gene expression changes induced by carcinogens may identify differences in molecular function between target and non-target organs. Target organs for benzo[a]pyrene (BaP) carcinogenicity in mice (lung, spleen and...

    Authors: Jie Zuo, Daniel S Brewer, Volker M Arlt, Colin S Cooper and David H Phillips
    Citation: BMC Genomics 2014 15:880
    Content type: Research article Published on:

  17. Grosmannia clavigera is a bark beetle-vectored fungal pathogen of pines that causes wood discoloration and may kill trees by disrupting nutrient and water transport. Trees respond to attacks from beetles and asso...

    Authors: Uljana Hesse-Orce, Scott DiGuistini, Christopher I Keeling, Ye Wang, Maria Li, Hannah Henderson, T Roderick Docking, Nancy Y Liao, Gordon Robertson, Robert A Holt, Steven JM Jones, Jörg Bohlmann and Colette Breuil
    Citation: BMC Genomics 2010 11:536
    Content type: Research article Published on:

  19. Spirochetal organisms of the Treponema genus are responsible for causing Treponematoses. Pathogenic treponemes is a Gram-negative, motile, spirochete pathogen that causes syphilis in human. Treponema pallidum sub...

    Authors: Arun Kumar Jaiswal, Sandeep Tiwari, Syed Babar Jamal, Letícia de Castro Oliveira, Leandro Gomes Alves, Vasco Azevedo, Preetam Ghosh, Carlo Jose Freira Oliveira and Siomar C. Soares
    Citation: BMC Genomics 2020 21:33
    Content type: Research article Published on:

  20. The R locus controls the color of pigmented soybean (Glycine max) seeds. However information about its control over seed coat biochemistry and gene expressions remains limited. The seed coats of nearly-isogenic b...

    Authors: Nik Kovinich, Ammar Saleem, John T Arnason and Brian Miki
    Citation: BMC Genomics 2011 12:381
    Content type: Research article Published on:

  21. Gangba sheep as a famous breed of Tibetan sheep, its wool color is mainly white and black. Gangba wool is economically important as a high-quality raw material for Tibetan blankets and Tibetan serge. However, ...

    Authors: Wentao Zhang, Cuicheng Luosang, Chao Yuan, Tingting Guo, Caihong Wei, Jianbin Liu and Zengkui Lu
    Citation: BMC Genomics 2024 25:606
    Content type: Research Published on:

  22. The threespine stickleback (Gasterosteus aculeatus) has become an important model species for studying both contemporary and parallel evolution. In particular, differential adaptation to freshwater and marine env...

    Authors: Anne-Laure Ferchaud, Susanne H Pedersen, Dorte Bekkevold, Jianbo Jian, Yongchao Niu and Michael M Hansen
    Citation: BMC Genomics 2014 15:867
    Content type: Methodology article Published on:

  23. Phytohormones are key regulators of plant growth, development, and signalling networks involved in responses to diverse biotic and abiotic stresses. Transcriptional reference maps of hormone responses have bee...

    Authors: Peng-Fei Qi, Yun-Feng Jiang, Zhen-Ru Guo, Qing Chen, Thérèse Ouellet, Lu-Juan Zong, Zhen-Zhen Wei, Yan Wang, Ya-Zhou Zhang, Bin-Jie Xu, Li Kong, Mei Deng, Ji-Rui Wang, Guo-Yue Chen, Qian-Tao Jiang, Xiu-Jin Lan…
    Citation: BMC Genomics 2019 20:390
    Content type: Research article Published on:

  24. Propionibacterium freudenreichii is a food grade bacterium consumed both in cheeses and in probiotic preparations. Its promising probiotic potential, relying largely on the active release of beneficial metabolite...

    Authors: Taous Saraoui, Sandrine Parayre, Grégory Guernec, Valentin Loux, Jérôme Montfort, Aurélie Le Cam, Gaëlle Boudry, Gwenaël Jan and Hélène Falentin
    Citation: BMC Genomics 2013 14:911
    Content type: Research article Published on:

  25. Angelica sinensis (Danggui), a renowned medicinal orchid, has gained significant recognition for its therapeutic effects in treating a wide range of ailments. Genome information serves as a valuable resource, ena...

    Authors: Silan Wu, Lingling Da, Qiaoqiao Xiao, Qi Pan, Jinqiang Zhang and Jiaotong Yang
    Citation: BMC Genomics 2024 25:96
    Content type: Database Published on:

  26. Chestnut seeds are important kinds of edible nuts rich in starch and protein. The characteristics and nutrient contents of chestnut have been found to show obvious metaxenia effects in previous studies. To imp...

    Authors: Shengxing Li, Zhuogong Shi, Qiurong Zhu, Liang Tao, Wenhui Liang and Zhiheng Zhao
    Citation: BMC Genomics 2021 22:617
    Content type: Research article Published on:

  27. The parasitic mite, Varroa destructor, is the most serious pest of the western honey bee, Apis mellifera, and has caused the death of millions of colonies worldwide. This mite reproduces in brood cells and parasi...

    Authors: M Navajas, A Migeon, C Alaux, ML Martin-Magniette, GE Robinson, JD Evans, S Cros-Arteil, D Crauser and Y Le Conte
    Citation: BMC Genomics 2008 9:301
    Content type: Research article Published on:

  28. Cardiorespiratory fitness (VO2max) is an excellent predictor of chronic disease morbidity and mortality risk. Guidelines recommend individuals undertake exercise training to improve VO2max for chronic disease red...

    Authors: Camilla J. Williams, Mark G. Williams, Nir Eynon, Kevin J. Ashton, Jonathan P. Little, Ulrik Wisloff and Jeff S. Coombes
    Citation: BMC Genomics 2017 18(Suppl 8):831
    Content type: Review Published on:

    This article is part of a Supplement: Volume 18 Supplement 8

  29. Iron metabolism and regulation is an indispensable part of species survival, most importantly for blood feeding insects. Iron regulatory proteins are central regulators of iron homeostasis, whose binding to ir...

    Authors: Zahra Jalali Sefid Dashti, Junaid Gamieldien and Alan Christoffels
    Citation: BMC Genomics 2016 17:561
    Content type: Research article Published on:

  30. The relative scarcity of Copia retrotransposons has been recently characterized in metazoans in comparison with the other superfamilies of LTR elements. Furthermore, Copia retrotransposons have often a particu...

    Authors: Tifenn Donnart, Mathieu Piednoël, Dominique Higuet and Éric Bonnivard
    Citation: BMC Genomics 2017 18:410
    Content type: Research article Published on:

  31. The annual fish Nothobranchius furzeri is characterized by a natural dichromatism with yellow-tailed and red-tailed male individuals. These differences are due to different distributions of xanthophores and eryth...

    Authors: Enoch Ng’oma, Marco Groth, Roberto Ripa, Matthias Platzer and Alessandro Cellerino
    Citation: BMC Genomics 2014 15:754
    Content type: Research article Published on:

  32. Our previously published reports have described an effective biocontrol agent named Pseudomonas sp. M18 as its 16S rDNA sequence and several regulator genes share homologous sequences with those of P. aeruginosa,...

    Authors: Da-Qiang Wu, Jing Ye, Hong-Yu Ou, Xue Wei, Xianqing Huang, Ya-Wen He and Yuquan Xu
    Citation: BMC Genomics 2011 12:438
    Content type: Research article Published on:

  33. Ralstonia solanacearum is a soil-borne beta-proteobacterium that causes bacterial wilt disease in many food crops and is a major problem for agriculture in intertropical regions. R. solanacearum is a heterogeneou...

    Authors: Nemo Peeters, Sébastien Carrère, Maria Anisimova, Laure Plener, Anne-Claire Cazalé and Stephane Genin
    Citation: BMC Genomics 2013 14:859
    Content type: Research article Published on:

  34. Streptococcus thermophilus is a Gram-positive bacterium widely used as starter in the dairy industry as well as in many traditional fermented products. In addition to its technological importance, it has also gai...

    Authors: Emeline Roux, Aurélie Nicolas, Florence Valence, Grégoire Siekaniec, Victoria Chuat, Jacques Nicolas, Yves Le Loir and Eric Guédon
    Citation: BMC Genomics 2022 23:210
    Content type: Research Published on:

  35. Ionizing radiation composed of accelerated ions of high atomic number (Z) and energy (HZE) deposits energy and creates damage in cells in a discrete manner as compared to the random deposition of energy and da...

    Authors: Liang-Hao Ding, Seongmi Park, Michael Peyton, Luc Girard, Yang Xie, John D Minna and Michael D Story
    Citation: BMC Genomics 2013 14:372
    Content type: Research article Published on:

  36. Recently it has been shown that Ensifer adhaerens can be used as a plant transformation technology, transferring genes into several plant genomes when equipped with a Ti plasmid. For this study, we have sequenced...

    Authors: Steven Rudder, Fiona Doohan, Christopher J Creevey, Toni Wendt and Ewen Mullins
    Citation: BMC Genomics 2014 15:268
    Content type: Research article Published on:

  37. Chromatin-immunoprecipitation followed by sequencing (ChIP-seq) is the method of choice for mapping genome-wide binding of chromatin-associated factors. However, broadly applicable methods for between-sample c...

    Authors: Luis A. Vale-Silva, Tovah E. Markowitz and Andreas Hochwagen
    Citation: BMC Genomics 2019 20:54
    Content type: Methodology article Published on:

  38. The liver possesses an ability of compensatory growth after removing three of five lobes in mammals or one of three lobes in zebrafish. The reenter of hepatocytes into the cell cycle is one of the hallmarks fo...

    Authors: Guohui Feng, Yong Long, Jinrong Peng, Qing Li and Zongbin Cui
    Citation: BMC Genomics 2015 16:979
    Content type: Research article Published on:

  39. Sphingosine- 1-Phosphate (S1P) is a bioactive lipid and an intracellular as well as an extracellular signaling molecule. S1P ligand specifically binds to five related cell surface G-protein-coupled receptors (S1P

    Authors: Viswanathan Natarajan, Alison W. Ha, Yangbasai Dong, Narsa M. Reddy, David L. Ebenezer, Prasad Kanteti, Sekhar P. Reddy, J. Usha Raj, Zhengdeng Lei, Mark Maienschein-Cline, Zarema Arbieva and Anantha Harijith
    Citation: BMC Genomics 2017 18:664
    Content type: Research article Published on:

  40. Cancer genomes evolve in both space and time, which contributes to the genetic heterogeneity that underlies tumor progression and drug resistance. In human melanoma, identifying mechanistically important event...

    Authors: Emily R. Kansler, Akanksha Verma, Erin M. Langdon, Theresa Simon-Vermot, Alexandra Yin, William Lee, Marc Attiyeh, Olivier Elemento and Richard M. White
    Citation: BMC Genomics 2017 18:136
    Content type: Research article Published on:

  41. Homeodomain-leucine zipper (HD-Zip) transcription factors are plant-specific and play important roles in plant defense against environmental stresses. Identification and functional studies have been carried ou...

    Authors: Yujiao Wang, Hongjuan Wang, Chun Yu, Xiaoming Yan, Jiasong Chu, Benli Jiang and Jiabao Zhu
    Citation: BMC Genomics 2024 25:182
    Content type: Research Published on:

  43. Rewriting the genomes of living organisms has been a long-standing aim in the biological sciences. The revelation of the CRISPR/Cas9 technology has revolutionized the entire biological field. Since its emergen...

    Authors: Shiwei Zhou, Laura Johanna Lenk, Yawei Gao, Yuhui Wang, Xiaoe Zhao, Menghao Pan, Shuhong Huang, Kexin Sun, Peter Kalds, Qi Luo, Simon Lillico, Tad Sonstegard, Ute I. Scholl, Baohua Ma, Bjoern Petersen, Yulin Chen…
    Citation: BMC Genomics 2023 24:313
    Content type: Research Published on:

  45. The Hafnia genus is an opportunistic pathogen that has been implicated in both nosocomial and community-acquired infections. Although Hafnia is fairly often isolated from clinical material, its taxonomy has remai...

    Authors: Zhiqiu Yin, Chao Yuan, Yuhui Du, Pan Yang, Chengqian Qian, Yi Wei, Si Zhang, Di Huang and Bin Liu
    Citation: BMC Genomics 2019 20:768
    Content type: Research article Published on:

  46. Ciliate metallothioneins (MTs) are included in family 7 of the MT superfamily. This family has been divided into two main subfamilies: 7a or CdMTs and 7b or CuMTs. All ciliate MTs reported have been isolated f...

    Authors: Patricia de Francisco, Laura María Melgar, Silvia Díaz, Ana Martín-González and Juan Carlos Gutiérrez
    Citation: BMC Genomics 2016 17:346
    Content type: Research article Published on:

  47. Retinal pigment epithelium (RPE) cells transfer oxygen and nutrients from choroid to the neural retina. Reduced oxygen to RPE perturbs development and functions of blood vessels in retina. Previous efforts of ...

    Authors: Zhiwen Jiang, Jiaqi Yang, Aimei Dai, Yuming Wang, Wei Li and Zhi Xie
    Citation: BMC Genomics 2017 18:638
    Content type: Research article Published on:

  48. The non-climacteric ‘Yellow’ melon (Cucumis melo, inodorus group) is an economically important crop and its quality is mainly determined by the sugar content. Thus, knowledge of sugar metabolism and its related p...

    Authors: Michelle Orane Schemberger, Marília Aparecida Stroka, Letícia Reis, Kamila Karoline de Souza Los, Gillize Aparecida Telles de Araujo, Michelle Zibetti Tadra Sfeir, Carolina Weigert Galvão, Rafael Mazer Etto, Amanda Regina Godoy Baptistão and Ricardo Antonio Ayub
    Citation: BMC Genomics 2020 21:262
    Content type: Research article Published on:

  49. As a key regulatory enzyme in the glycolysis pathway, pyruvate kinase (PK) plays crucial roles in multiple physiological processes during plant growth and is also involved in the abiotic stress response. Howev...

    Authors: Wei Liu, Yubin Wang, Yanwei Zhang, Wei Li, Caijie Wang, Ran Xu, Haiying Dai and Lifeng Zhang
    Citation: BMC Genomics 2024 25:88
    Content type: Research Published on:

  50. Legionella pneumophila is an intracellular pathogen of environmental protozoa. When humans inhale contaminated aerosols this bacterium may cause a severe pneumonia called Legionnaires' disease. Despite the abunda...

    Authors: Laura Gomez-Valero, Christophe Rusniok, Sophie Jarraud, Benoit Vacherie, Zoé Rouy, Valerie Barbe, Claudine Medigue, Jerome Etienne and Carmen Buchrieser
    Citation: BMC Genomics 2011 12:536
    Content type: Research article Published on:

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BMC Genomics

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