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6356 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Marine deep subsurface sediments were once thought to be devoid of eukaryotic life, but advances in molecular technology have unlocked the presence and activity of well-known closely related terrestrial and ma...

    Authors: Morgan S. Sobol, Tatsuhiko Hoshino, Victor Delgado, Taiki Futagami, Chihiro Kadooka, Fumio Inagaki and Brandi Kiel Reese
    Citation: BMC Genomics 2023 24:249
    Content type: Research Published on:

  2. Marine and freshwater zooplankton exhibit daily rhythmic patterns of behavior and physiology which may be regulated directly by the light:dark (LD) cycle and/or a molecular circadian clock. One of the best-stu...

    Authors: Samuel S. C. Rund, Boyoung Yoo, Camille Alam, Taryn Green, Melissa T. Stephens, Erliang Zeng, Gary F. George, Aaron D. Sheppard, Giles E. Duffield, Tijana Milenković and Michael E. Pfrender
    Citation: BMC Genomics 2016 17:653
    Content type: Research article Published on:

  3. Klebsiella pneumoniae is an important opportunistic pathogen associated with nosocomial and community-acquired infections. A wide repertoire of virulence and antimicrobial resistance genes is present in K. pneumo...

    Authors: Pablo Ivan Pereira Ramos, Renata Christina Picão, Luiz Gonzaga Paula de Almeida, Nicholas Costa B Lima, Raquel Girardello, Ana Carolina P Vivan, Danilo E Xavier, Fernando G Barcellos, Marsileni Pelisson, Eliana C Vespero, Claudine Médigue, Ana Tereza Ribeiro de Vasconcelos, Ana Cristina Gales and Marisa Fabiana Nicolás
    Citation: BMC Genomics 2014 15:54
    Content type: Research article Published on:

  4. Understanding the processes that drive the evolution of snake venom is a topic of great research interest in molecular and evolutionary toxinology. Recent studies suggest that ontogenetic changes in venom comp...

    Authors: Jordi Durban, Alicia Pérez, Libia Sanz, Aarón Gómez, Fabián Bonilla, Santos Rodríguez, Danilo Chacón, Mahmood Sasa, Yamileth Angulo, José M Gutiérrez and Juan J Calvete
    Citation: BMC Genomics 2013 14:234
    Content type: Research article Published on:

  5. Macrophomina phaseolina is one of the most destructive necrotrophic fungal pathogens that infect more than 500 plant species throughout the world. It can grow rapidly in infected plants and subsequently produces ...

    Authors: Md Shahidul Islam, Md Samiul Haque, Mohammad Moinul Islam, Emdadul Mannan Emdad, Abdul Halim, Quazi Md Mosaddeque Hossen, Md Zakir Hossain, Borhan Ahmed, Sifatur Rahim, Md Sharifur Rahman, Md Monjurul Alam, Shaobin Hou, Xuehua Wan, Jennifer A Saito and Maqsudul Alam
    Citation: BMC Genomics 2012 13:493
    Content type: Research article Published on:

  6. Herbicide resistance in agrestal weeds is a global problem threatening food security. Non-target-site resistance (NTSR) endowed by mechanisms neutralising the herbicide or compensating for its action is consid...

    Authors: Jeanne Aude Christiane Gardin, Jérôme Gouzy, Sébastien Carrère and Christophe Délye
    Citation: BMC Genomics 2015 16:590
    Content type: Research article Published on:

  7. Our recent study showed the global physiological function of the differentially expressed genes of prostate cancer in Chinese patients was different from that of other non-Chinese populations. microRNA are est...

    Authors: Hui-chan He, Zhao-dong Han, Qi-shan Dai, Xiao-hui Ling, Xin Fu, Zhuo-yuan Lin, Ye-han Deng, Guo-qiang Qin, Chao Cai, Jia-hong Chen, Fu-neng Jiang, Xingyin Liu and Wei-de Zhong
    Citation: BMC Genomics 2013 14:757
    Content type: Research article Published on:

  8. Mycobacterium avium ssp. paratuberculosis (MAP) is the causative agent of paratuberculosis, or Johne’s disease (JD), an incurable bovine disease. The evidence for susceptibility to MAP disease points to multiple ...

    Authors: Olivier Ariel, Jean-Simon Brouard, Andrew Marete, Filippo Miglior, Eveline Ibeagha-Awemu and Nathalie Bissonnette
    Citation: BMC Genomics 2021 22:162
    Content type: Research article Published on:

  9. Microalgae are promising feedstock for production of lipids, sugars, bioactive compounds and in particular biofuels, yet development of sensitive and reliable phylotyping strategies for microalgae has been hin...

    Authors: Li Wei, Yi Xin, Dongmei Wang, Xiaoyan Jing, Qian Zhou, Xiaoquan Su, Jing Jia, Kang Ning, Feng Chen, Qiang Hu and Jian Xu
    Citation: BMC Genomics 2013 14:534
    Content type: Research article Published on:

  10. Severe equine asthma, also known as recurrent airway obstruction (RAO), is a debilitating, performance limiting, obstructive respiratory condition in horses that is phenotypically similar to human asthma. Past...

    Authors: Victor C. Mason, Robert J. Schaefer, Molly E. McCue, Tosso Leeb and Vinzenz Gerber
    Citation: BMC Genomics 2018 19:581
    Content type: Research article Published on:

  11. The presence of Aggregated Lymphoid Nodules Area (ALNA) is a notable anatomical characteristic observed in the abomasum of Bactrian camels. This area is comprised of two separate regions, namely the Reticular ...

    Authors: Yujiao Cheng, Yan Ren, Wenhui Wang and Wangdong Zhang
    Citation: BMC Genomics 2023 24:608
    Content type: Research Published on:

  12. Follicle selection in chickens refers to the process of selecting one follicle from a group of small yellow follicles (SY, 6–8 mm in diameter) for development into 12–15 mm hierarchal follicles (usually F6 fol...

    Authors: Yanhong Zhang, Qiuyue Chen, Yuanyuan Guo, Li Kang, Yi Sun and Yunliang Jiang
    Citation: BMC Genomics 2023 24:109
    Content type: Research Published on:

  13. Ancient northern East Asians (ANEA) from the Yellow River region, who pioneered millet cultivation, play a crucial role in understanding the origins of ethnolinguistically diverse populations in modern China a...

    Authors: Haoran Su, Mengge Wang, Xiangping Li, Shuhan Duan, Qiuxia Sun, Yuntao Sun, Zhiyong Wang, Qingxin Yang, Yuguo Huang, Jie Zhong, Jing Chen, Xiucheng Jiang, Jinyue Ma, Ting Yang, Yunhui Liu, Lintao Luo…
    Citation: BMC Genomics 2024 25:611
    Content type: Research Published on:

  15. Long noncoding RNAs (lncRNAs) have roles in gene regulation, epigenetics, and molecular scaffolding and it is hypothesized that they underlie some mammalian evolutionary adaptations. However, for many mammalia...

    Authors: Amita Kashyap, Adelaide Rhodes, Brent Kronmiller, Josie Berger, Ashley Champagne, Edward W. Davis, Mitchell V. Finnegan, Matthew Geniza, David A. Hendrix, Christiane V. Löhr, Vanessa M. Petro, Thomas J. Sharpton, Jackson Wells, Clinton W. Epps, Pankaj Jaiswal, Brett M. Tyler…
    Citation: BMC Genomics 2020 21:153
    Content type: Research article Published on:

  16. Transposable-element mediated chromosomal rearrangements require the involvement of two transposons and two double-strand breaks (DSB) located in close proximity. In radiobiology, DSB proximity is also a major...

    Authors: Javier Terol, Victoria Ibañez, José Carbonell, Roberto Alonso, Leandro H Estornell, Concetta Licciardello, Ivo G Gut, Joaquín Dopazo and Manuel Talon
    Citation: BMC Genomics 2015 16:69
    Content type: Research article Published on:

  18. Consuming watercress is thought to provide health benefits as a consequence of its phytonutrient composition. However, for watercress there are currently limited genetic resources underpinning breeding efforts...

    Authors: Nikol Voutsina, Adrienne C. Payne, Robert D. Hancock, Graham J. J. Clarkson, Steve D. Rothwell, Mark A. Chapman and Gail Taylor
    Citation: BMC Genomics 2016 17:378
    Content type: Research article Published on:

  19. Female reproductive potential plays a significant role in the survival and stability of species, and sexual maturation and mating processes are crucial. However, our knowledge of the reproductive genes involve...

    Authors: Weiwei Zheng, Deye Luo, Fangyu Wu, Jialu Wang and Hongyu Zhang
    Citation: BMC Genomics 2016 17:194
    Content type: Research article Published on:

  20. Populations of Atlantic salmon display highly significant genetic differences with unresolved molecular basis. These differences may result from separate postglacial colonization patterns, diversifying natural...

    Authors: Erik Kjærner-Semb, Fernando Ayllon, Tomasz Furmanek, Vidar Wennevik, Geir Dahle, Eero Niemelä, Mikhail Ozerov, Juha-Pekka Vähä, Kevin A. Glover, Carl J. Rubin, Anna Wargelius and Rolf B. Edvardsen
    Citation: BMC Genomics 2016 17:610
    Content type: Research article Published on:

  21. Plant and animal pathogenic fungus Cochliobolus lunatus cause great economic damages worldwide every year. C. lunatus displays an increased temperature dependent-virulence to a wide range of hosts. Nonetheless, t...

    Authors: Bengyella Louis, Sayanika Devi Waikhom, Pranab Roy, Pardeep Kumar Bhardwaj, Mohendro Wakambam Singh, Sailendra Goyari, Chandradev K Sharma and Narayan Chandra Talukdar
    Citation: BMC Genomics 2014 15:213
    Content type: Research article Published on:

    The Erratum to this article has been published in BMC Genomics 2015 16:347

  22. Circular chromosome conformation capture (4C) has provided important insights into three dimensional (3D) genome organization and its critical impact on the regulation of gene expression. We developed a new qu...

    Authors: Cinthya J. Zepeda-Mendoza, Swagatam Mukhopadhyay, Emily S. Wong, Nathalie Harder, Erik Splinter, Elzo de Wit, Melanie A. Eckersley-Maslin, Thomas Ried, Roland Eils, Karl Rohr, Alea Mills, Wouter de Laat, Paul Flicek, Anirvan M. Sengupta and David L. Spector
    Citation: BMC Genomics 2015 16:982
    Content type: Research article Published on:

  23. The apparent scarcity of available sequence data has greatly impeded evolutionary studies in Acari (mites and ticks). This subclass encompasses over 48,000 species and forms the largest group within the Arachn...

    Authors: Wannes Dermauw, Thomas Van Leeuwen, Bartel Vanholme and Luc Tirry
    Citation: BMC Genomics 2009 10:107
    Content type: Research article Published on:

  24. For centuries roses have been selected based on a number of traits. Little information exists on the genetic and molecular basis that contributes to these traits, mainly because information on expressed genes ...

    Authors: Annick Dubois, Sebastien Carrere, Olivier Raymond, Benjamin Pouvreau, Ludovic Cottret, Aymeric Roccia, Jean-Paul Onesto, Soulaiman Sakr, Rossitza Atanassova, Sylvie Baudino, Fabrice Foucher, Manuel Le Bris, Jérôme Gouzy and Mohammed Bendahmane
    Citation: BMC Genomics 2012 13:638
    Content type: Research article Published on:

  25. Sugarcane is an economically important crop contributing to about 80 % of the world sugar production. Increasing efforts in molecular biological studies have been performed for improving the sugar yield and ot...

    Authors: Qing Zhang, Weichang Hu, Fan Zhu, Liming Wang, Qingyi Yu, Ray Ming and Jisen Zhang
    Citation: BMC Genomics 2016 17:88
    Content type: Research article Published on:

  27. The root systems play essential roles for plants to anchorage to the soil, and to exploit the mineral and water resources. The molecular mechanisms underlying root development have been extensively studied to ...

    Authors: Xiaoxia Ma, Chaogang Shao, Huizhong Wang, Yongfeng Jin and Yijun Meng
    Citation: BMC Genomics 2013 14:510
    Content type: Research article Published on:

  28. Using a combination of pyrosequencing and conventional Sanger sequencing, the complete genome sequence of the recently described novel Brucella species, Brucella microti, was determined. B. microti is a member of...

    Authors: Stéphane Audic, Magali Lescot, Jean-Michel Claverie and Holger C Scholz
    Citation: BMC Genomics 2009 10:352
    Content type: Research article Published on:

  29. The genomic architecture of adaptive traits remains poorly understood in non-model plants. Various approaches can be used to bridge this gap, including the mapping of quantitative trait loci (QTL) in pedigrees...

    Authors: Julien Prunier, Betty Pelgas, France Gagnon, Mireille Desponts, Nathalie Isabel, Jean Beaulieu and Jean Bousquet
    Citation: BMC Genomics 2013 14:368
    Content type: Research article Published on:

  30. Streptococcus agalactiae, also referred to as Group B Streptococcus (GBS), is a frequent resident of the rectovaginal tract in humans, and a major cause of neonatal infection. In addition, S. agalactiae is a know...

    Authors: Guangjin Liu, Wei Zhang and Chengping Lu
    Citation: BMC Genomics 2013 14:775
    Content type: Research article Published on:

  31. Most evolutionary developmental biology ("evo-devo") studies of emerging model organisms focus on small numbers of candidate genes cloned individually using degenerate PCR. However, newly available sequencing ...

    Authors: Ben Ewen-Campen, Nathan Shaner, Kristen A Panfilio, Yuichiro Suzuki, Siegfried Roth and Cassandra G Extavour
    Citation: BMC Genomics 2011 12:61
    Content type: Research article Published on:

  32. MicroRNAs (miRNAs) play multiple roles in tumor biology. Interestingly, reports from multiple groups suggest that miRNA targets may be coupled through competitive stoichiometric sequestration. Specifically, co...

    Authors: Hua-Sheng Chiu, María Rodríguez Martínez, Mukesh Bansal, Aravind Subramanian, Todd R. Golub, Xuerui Yang, Pavel Sumazin and Andrea Califano
    Citation: BMC Genomics 2017 18:418
    Content type: Research article Published on:

  33. Arthropods are the most diverse animal phylum, but their genomic resources are relatively few. While the genome of the branchiopod Daphnia pulex is now available, no other large-scale crustacean genomic resources...

    Authors: Victor Zeng, Karina E Villanueva, Ben S Ewen-Campen, Frederike Alwes, William E Browne and Cassandra G Extavour
    Citation: BMC Genomics 2011 12:581
    Content type: Research article Published on:

  34. Plant P-type II Ca2+ATPases are formed by two distinct groups of proteins (ACAs and ECAs) that perform pumping of Ca2+ outside the cytoplasm during homeostasis, and play vital functions during development and str...

    Authors: Mehak Taneja and Santosh Kumar Upadhyay
    Citation: BMC Genomics 2018 19:389
    Content type: Research article Published on:

  35. Small non-coding RNAs (sRNAs) are regarded as important regulators in prokaryotes and play essential roles in diverse cellular processes. Xanthomonas oryzae pathovar oryzae (Xoo) is an important plant pathogenic ...

    Authors: Hong Liang, Ying-Tao Zhao, Jie-Qiong Zhang, Xiu-Jie Wang, Rong-Xiang Fang and Yan-Tao Jia
    Citation: BMC Genomics 2011 12:87
    Content type: Research article Published on:

  37. Porcine Epidemic Diarrhea Virus (PEDV) is a coronavirus that seriously affects the swine industry. MicroRNAs and long noncoding RNAs are two relevant non-coding RNAs (ncRNAs) class and play crucial roles in a ...

    Authors: Xiaojie Shi, Qi Zhang, Jingjing Wang, Yuting Zhang, Yuchao Yan, Yi Liu, Naling Yang, Quanqiong Wang and Xingang Xu
    Citation: BMC Genomics 2022 23:586
    Content type: Research Published on:

  38. Hop (Humulus lupulus L.) is cultivated for its cones, the secondary metabolites of which contribute bitterness, flavour and aroma to beer. Molecular breeding methods, such as marker assisted selection (MAS), have...

    Authors: Erin L McAdam, Jules S Freeman, Simon P Whittock, Emily J Buck, Jernej Jakse, Andreja Cerenak, Branka Javornik, Andrzej Kilian, Cai-Hong Wang, Dave Andersen, René E Vaillancourt, Jason Carling, Ron Beatson, Lawrence Graham, Donna Graham, Peter Darby…
    Citation: BMC Genomics 2013 14:360
    Content type: Research article Published on:

  39. X-chromosome inactivation (XCI) is an epigenetic process that occurs during early development in mammalian females by randomly silencing one of two copies of the X chromosome in each cell. The preferential ina...

    Authors: Numrah Fadra, Laura E Schultz-Rogers, Pritha Chanana, Margot A Cousin, Erica L Macke, Alejandro Ferrer, Filippo Pinto e Vairo, Rory J Olson, Gavin R Oliver, Lindsay A Mulvihill, Garrett Jenkinson and Eric W Klee
    Citation: BMC Genomics 2024 25:371
    Content type: Research Published on:

  41. While eukaryotic noncoding RNAs have recently received intense scrutiny, it is becoming clear that bacterial transcription is at least as pervasive. Bacterial small RNAs and antisense RNAs (sRNAs) are often as...

    Authors: Robin C. Friedman, Stefan Kalkhof, Olivia Doppelt-Azeroual, Stephan A. Mueller, Martina Chovancová, Martin von Bergen and Benno Schwikowski
    Citation: BMC Genomics 2017 18:553
    Content type: Methodology Article Published on:

  42. Prion diseases are neurodegenerative diseases that are characterized by the conversion of the cellular prion protein (PrPc) into a pathogenic isoform (PrPSc). It is known that neurodegeneration is often accompani...

    Authors: Judith Montag, Markus Brameier, Ann-Christin Schmädicke, Sabine Gilch, Hermann M Schätzl and Dirk Motzkus
    Citation: BMC Genomics 2012 13:486
    Content type: Research article Published on:

  43. Trichuris muris in the mouse is an invaluable model for infection of man with the gastrointestinal nematode Trichuris trichiura. Three T. muris isolates have been studied, the Edinburgh (E), the Japan (J) and the...

    Authors: Riccardo D'Elia, Matthew L deSchoolmeester, Leo AH Zeef, Steven H Wright, Alan D Pemberton and Kathryn J Else
    Citation: BMC Genomics 2009 10:492
    Content type: Research article Published on:

  44. Recent advances in studies of the Schistosoma japonicum genome have opened new avenues for the elucidation of parasite biology and the identification of novel targets for vaccines, drug development and early diag...

    Authors: Nan Hou, Xianyu Piao, Pengfei Cai, Chuang Wu, Shuai Liu, Yan Xiao and Qijun Chen
    Citation: BMC Genomics 2015 16:126
    Content type: Research article Published on:

  45. Starvation not only affects the nutritional and health status of the animals, but also the microbial composition in the host’s intestine. Next-generation sequencing provides a unique opportunity to explore gut...

    Authors: Jun Hong Xia, Grace Lin, Gui Hong Fu, Zi Yi Wan, May Lee, Le Wang, Xiao Jun Liu and Gen Hua Yue
    Citation: BMC Genomics 2014 15:266
    Content type: Research article Published on:

  46. The basidiomycete Moniliophthora roreri is the causal agent of Frosty pod rot (FPR) disease of cacao (Theobroma cacao), the source of chocolate, and FPR is one of the most destructive diseases of this important p...

    Authors: Lyndel W Meinhardt, Gustavo Gilson Lacerda Costa, Daniela PT Thomazella, Paulo José PL Teixeira, Marcelo Falsarella Carazzolle, Stephan C Schuster, John E Carlson, Mark J Guiltinan, Piotr Mieczkowski, Andrew Farmer, Thiruvarangan Ramaraj, Jayne Crozier, Robert E Davis, Jonathan Shao, Rachel L Melnick, Gonçalo AG Pereira…
    Citation: BMC Genomics 2014 15:164
    Content type: Research article Published on:

  47. Mitochondrial (mt) markers are successfully applied in evolutionary biology and systematics because mt genomes often evolve faster than the nuclear genomes. In addition, they allow robust phylogenetic analysis...

    Authors: Angelo Duò, Rémy Bruggmann, Stefan Zoller, Matthias Bernt and Christoph R Grünig
    Citation: BMC Genomics 2012 13:166
    Content type: Research article Published on:

  48. Cylindrospermopsin is a highly persistent cyanobacterial secondary metabolite toxic to humans and other living organisms. Strain OF001 and A210 are manganese-oxidizing bacteria (MOB) able to transform cylindro...

    Authors: Erika Berenice Martínez-Ruiz, Myriel Cooper, Jimena Barrero-Canosa, Mindia A. S. Haryono, Irina Bessarab, Rohan B. H. Williams and Ulrich Szewzyk
    Citation: BMC Genomics 2021 22:464
    Content type: Research article Published on:

  49. The biological dimensions of genes are manifold. These include genomic properties, (e.g., X/autosomal linkage, recombination) and functional properties (e.g., expression level, tissue specificity). Multiple pr...

    Authors: Shuwei Li, Ching-Hua Shih and Michael H Kohn
    Citation: BMC Genomics 2010 11:322
    Content type: Research article Published on:

  50. Phytoplasmas are insect-transmitted, uncultivable bacterial plant pathogens that cause diseases in hundreds of economically important plants. They represent a monophyletic group within the class Mollicutes (trivi...

    Authors: Michael Kube, Bernd Schneider, Heiner Kuhl, Thomas Dandekar, Katja Heitmann, Alexander M Migdoll, Richard Reinhardt and Erich Seemüller
    Citation: BMC Genomics 2008 9:306
    Content type: Research article Published on:

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BMC Genomics

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