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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Wall associated kinase (WAK) and WAK-like (WAKL) are typical pattern recognition receptors act as the first sentry of plant defense. But little of WAK/WAKL family is known in Rosaceae.

    Authors: Zicheng Wang, Yuan Ma, Meng Chen, Lingling Da, Zhen Su, Zhao Zhang and Xintong Liu
    Citation: BMC Genomics 2023 24:337
    Content type: Research Published on:

  2. The GII.4 Sydney 2012 strain of human norovirus (HuNoV) is a pandemic strain that is responsible for the majority of norovirus outbreaks in healthcare settings. The function of the non-structural (NS)1-2 prote...

    Authors: Zabeen Lateef, Gregory Gimenez, Estelle S. Baker and Vernon K. Ward
    Citation: BMC Genomics 2017 18:39
    Content type: Research Article Published on:

  3. Follicle mites of the genus Demodex are found on a wide diversity of mammals, including humans; surprisingly little is known, however, about the evolution of this association. Additional sequence information prom...

    Authors: Michael F Palopoli, Samuel Minot, Dorothy Pei, Alicia Satterly and Julie Endrizzi
    Citation: BMC Genomics 2014 15:1124
    Content type: Research article Published on:

  4. The effect of mutations conferring antibiotic resistance can depend on the genetic background. To determine if a previously de novo acquired antibiotic resistance influences the adaptation to a second antibiot...

    Authors: Marloes Hoeksema, Martijs J. Jonker, Stanley Brul and Benno H. ter Kuile
    Citation: BMC Genomics 2019 20:284
    Content type: Research article Published on:

  5. Miniature size in horses represents an extreme reduction of withers height that originated after domestication. In some breeds, it is a highly desired trait representing a breed- or subtype-specific feature. T...

    Authors: Julia Metzger, Janina Rau, Fanny Naccache, Laura Bas Conn, Gabriella Lindgren and Ottmar Distl
    Citation: BMC Genomics 2018 19:492
    Content type: Research article Published on:

  6. As an important vegetable crop, cultivated lettuce is grown worldwide and a great variety of agronomic traits have been preserved within germplasm collections. The mechanisms underlying these phenotypic variat...

    Authors: Zhaowu Zhang, Rob van Treuren, Ting Yang, Yulan Hu, Wenhui Zhou, Huan Liu and Tong Wei
    Citation: BMC Genomics 2023 24:659
    Content type: Research Published on:

  7. The contribution of individual organs to the whole-body adaptive response to fasting has not been established. Hence, gene-expression profiling, pathway, network and gene-set enrichment analysis and immunohist...

    Authors: Milka Sokolović, Aleksandar Sokolović, Diederik Wehkamp, Emiel Ver Loren van Themaat, Dirk R de Waart, Lisa A Gilhuijs-Pederson, Yuri Nikolsky, Antoine HC van Kampen, Theodorus BM Hakvoort and Wouter H Lamers
    Citation: BMC Genomics 2008 9:528
    Content type: Research article Published on:

  8. Members of the Bifidobacteriaceae family represent both dominant microbial groups that colonize the gut of various animals, especially during the suckling stage of their life, while they also occur as pathogenic ...

    Authors: Gabriele Andrea Lugli, Christian Milani, Francesca Turroni, Sabrina Duranti, Leonardo Mancabelli, Marta Mangifesta, Chiara Ferrario, Monica Modesto, Paola Mattarelli, Killer Jiří, Douwe van Sinderen and Marco Ventura
    Citation: BMC Genomics 2017 18:568
    Content type: Research article Published on:

  9. DNA methylation is a frequently studied epigenetic modification due to its role in regulating gene expression and hence in biological processes and in determining phenotypic plasticity in organisms. Rudimentar...

    Authors: Stefano Frattini, Emanuele Capra, Barbara Lazzari, Stephanie D. McKay, Beatrice Coizet, Andrea Talenti, Debora Groppetti, Pietro Riccaboni, Alessandro Pecile, Stefania Chessa, Bianca Castiglioni, John L. Williams, Giulio Pagnacco, Alessandra Stella and Paola Crepaldi
    Citation: BMC Genomics 2017 18:476
    Content type: Research article Published on:

  10. The production of metabolites via in vitro culture is promoted by the availability of fully defined metabolic pathways. Withanolides, the major bioactive phytochemicals of Withania somnifera, have been well studi...

    Authors: Kalaiselvi Senthil, Murukarthick Jayakodi, Pankajavalli Thirugnanasambantham, Sang Choon Lee, Pradeepa Duraisamy, Preethi M Purushotham, Kalaiselvi Rajasekaran, Shobana Nancy Charles, Irene Mariam Roy, Arul Kumar Nagappan, Gon Sup Kim, Yun Sun Lee, Senthil Natesan, Tae-Sun Min and Tae Jin Yang
    Citation: BMC Genomics 2015 16:14
    Content type: Research article Published on:

  11. The New Zealand collembolan genus Holacanthella contains the largest species of springtails (Collembola) in the world. Using Illumina technology we have sequenced and assembled a draft genome and transcriptome fr...

    Authors: Chen Wu, Melissa D. Jordan, Richard D. Newcomb, Neil J. Gemmell, Sarah Bank, Karen Meusemann, Peter K. Dearden, Elizabeth J. Duncan, Sefanie Grosser, Kim Rutherford, Paul P. Gardner, Ross N. Crowhurst, Bernd Steinwender, Leah K. Tooman, Mark I. Stevens and Thomas R. Buckley
    Citation: BMC Genomics 2017 18:795
    Content type: Research article Published on:

  12. Vertebrate mitochondrial genomes are optimized for fast replication and low cost of RNA expression. Accordingly, they are devoid of introns, are transcribed as polycistrons and contain very little intergenic s...

    Authors: Irene Adrian-Kalchhauser, Ola Svensson, Verena E. Kutschera, Magnus Alm Rosenblad, Martin Pippel, Sylke Winkler, Siegfried Schloissnig, Anders Blomberg and Patricia Burkhardt-Holm
    Citation: BMC Genomics 2017 18:177
    Content type: Research article Published on:

  13. The Gibberellic Acid-Stimulated Arabidopsis (GASA) gene family is widely involved in the regulation of plant growth, development, and stress response. However, information on the GASA gene family has not been rep...

    Authors: Bingxin Sun, Xianlei Zhao, Jiahui Gao, Jie Li, Yue Xin, Yonghui Zhao, Zhiyong Liu, Hui Feng and Chong Tan
    Citation: BMC Genomics 2023 24:668
    Content type: Research Published on:

  14. Coffee contains several compounds that have the potential to influence breast cancer risk and survival. However, epidemiologic data on the relation between coffee compounds and breast cancer survival are spars...

    Authors: Babita Shashni, Karun Sharma, Rumani Singh, Kishore R Sakharkar, Sarinder K Dhillon, Yukio Nagasaki and Meena K Sakharkar
    Citation: BMC Genomics 2013 14(Suppl 5):S6
    Content type: Research Published on:

    This article is part of a Supplement: Volume 14 Supplement 5

  15. Heat shock proteins have important functions in regulating plant growth and response to abiotic stress. HSP70 family genes have been described in several plant species, but a comprehensive analysis of the HSP70 f...

    Authors: Henan Su, Miaomiao Xing, Xing Liu, Zhiyuan Fang, Limei Yang, Mu Zhuang, Yangyong Zhang, Yong Wang and Honghao Lv
    Citation: BMC Genomics 2019 20:369
    Content type: Research article Published on:

  16. Salmonella enterica is a leading cause of foodborne illness worldwide resulting in considerable public health and economic costs. Testing for the presence of this pathogen in food is often hampered by the presenc...

    Authors: Ana Victoria C. Pilar, Nicholas Petronella, Forest M. Dussault, Adrian J. Verster, Sadjia Bekal, Roger C. Levesque, Lawrence Goodridge and Sandeep Tamber
    Citation: BMC Genomics 2020 21:377
    Content type: Research article Published on:

  17. Cotton supplies a great majority of natural fiber for the global textile industry. The negative correlation between yield and fiber quality has hindered breeders’ ability to improve these traits simultaneously...

    Authors: Md Sariful Islam, Gregory N. Thyssen, Johnie N. Jenkins, Linghe Zeng, Christopher D. Delhom, Jack C. McCarty, Dewayne D. Deng, Doug J. Hinchliffe, Don C. Jones and David D. Fang
    Citation: BMC Genomics 2016 17:903
    Content type: Research article Published on:

  18. Rapeseed (Brassica napus) is an important oil seed crop in the Brassicaceae family. Chemical induced male sterility (CIMS) is one of the widely used method to produce the hybrids in B. napus. Identification of th...

    Authors: Luyun Ning, Zhiwei Lin, Jianwei Gu, Lu Gan, Yonghong Li, Hao Wang, Liyun Miao, Libin Zhang, Baoshan Wang and Maoteng Li
    Citation: BMC Genomics 2018 19:806
    Content type: Research article Published on:

  20. Ethylene signal transduction in plants is conducted by the two-component system (TCS) which consists of histidine kinase (HK), histidine phosphotransferase (HPT) and response regulators (RRs). This system play...

    Authors: Yogeshwar V. Dhar, Deepika Lakhwani, Ashutosh Pandey, Shikha Singh, Prabodh K. Trivedi and Mehar H. Asif
    Citation: BMC Genomics 2019 20:674
    Content type: Research article Published on:

  21. There is a long-term interest in investigating the genetic basis of the horned/polled phenotype in domestic goats. Here, we report a genome-wide association study (GWAS) to detect the genetic loci affecting th...

    Authors: Jiazhong Guo, Rui Jiang, Ayi Mao, George E. Liu, Siyuan Zhan, Li Li, Tao Zhong, Linjie Wang, Jiaxue Cao, Yu Chen, Guojun Zhang and Hongping Zhang
    Citation: BMC Genomics 2021 22:769
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2022 23:117

  22. Plant cell wall (PCW) polysaccharides and especially xylans constitute an important part of human diet. Xylans are not degraded by human digestive enzymes in the upper digestive tract and therefore reach the c...

    Authors: Jordane Despres, Evelyne Forano, Pascale Lepercq, Sophie Comtet-Marre, Gregory Jubelin, Christophe Chambon, Carl J. Yeoman, Margaret E. Berg Miller, Christopher J. Fields, Eric Martens, Nicolas Terrapon, Bernard Henrissat, Bryan A. White and Pascale Mosoni
    Citation: BMC Genomics 2016 17:326
    Content type: Research article Published on:

  23. Although our microbial community and genomes (the human microbiome) outnumber our genome by several orders of magnitude, to what extent the human host genetic complement informs the microbiota composition is n...

    Authors: Jun Ma, Cristian Coarfa, Xiang Qin, Penelope E Bonnen, Aleksandar Milosavljevic, James Versalovic and Kjersti Aagaard
    Citation: BMC Genomics 2014 15:257
    Content type: Research article Published on:

  24. Root-knot nematodes (RKN), genus Meloidogyne, are plant parasitic worms that have the ability to transform root vascular cylinder cells into hypertrophied, multinucleate and metabolically over-active feeding cell...

    Authors: Clémence Medina, Martine da Rocha, Marc Magliano, Alizée Raptopoulo, Nathalie Marteu, Kevin Lebrigand, Pierre Abad, Bruno Favery and Stéphanie Jaubert-Possamai
    Citation: BMC Genomics 2018 19:943
    Content type: Research article Published on:

  25. The mosquito Aedes aegypti is the primary vector for medically important arthropod-borne viruses, including chikungunya virus (CHIKV). Following oral acquisition, an arbovirus has to persistently infect several o...

    Authors: Shengzhang Dong, Susanta K. Behura and Alexander W. E. Franz
    Citation: BMC Genomics 2017 18:382
    Content type: Research article Published on:

  26. The markers detected by genome-wide association study (GWAS) make it possible to dissect genetic structure and diversity at many loci. This can enable a wheat breeder to reveal and used genomic loci controllin...

    Authors: Ehsan Rabieyan, Mohammad Reza Bihamta, Mohsen Esmaeilzadeh Moghaddam, Valiollah Mohammadi and Hadi Alipour
    Citation: BMC Genomics 2022 23:831
    Content type: Research Published on:

  27. Deer mice (genus Peromyscus) are the most common rodents in North America. Despite the availability of reference genomes for some species, a comprehensive database of polymorphisms, especially in those maintained...

    Authors: Matthew D. Lucius, Hao Ji, Diego Altomare, Robert Doran, Ben Torkian, Amanda Havighorst, Vimala Kaza, Youwen Zhang, Alexander V. Gasparian, Joseph Magagnoli, Vijay Shankar, Michael Shtutman and Hippokratis Kiaris
    Citation: BMC Genomics 2021 22:662
    Content type: Research Published on:

  28. The procession of preadipocytes differentiation into mature adipocytes involves multiple cellular and signal transduction pathways. Recently. a seirces of noncoding RNAs (ncRNAs), including circular RNAs (circ...

    Authors: Du Yu, Li Xin, Xu Qing, Zhang Hao, Wang Yong, Zhu Jiangjiang and Lin Yaqiu
    Citation: BMC Genomics 2023 24:51
    Content type: Research Published on:

  29. Sepsis is a life-threatening condition characterized by a harmful host response to infection with organ dysfunction. Annually about 20 million people are dead owing to sepsis and its mortality rates is as high...

    Authors: Xiaojun Liu, Chengying Hong, Yichun Jiang, Wei Li, Youlian Chen, Yonghui Ma, Pengfei Zhao, Tiyuan Li, Huaisheng Chen, Xueyan Liu and Lixin Cheng
    Citation: BMC Genomics 2023 24:418
    Content type: Research Published on:

  30. Staphylococcus argenteus and S. schweitzeri, were recently proposed as novel species within S. aureus complex (SAC). S. argenteus has been reported in many countries and can threaten h...

    Authors: Dao-Feng Zhang, Xiao-Yang Zhi, Jing Zhang, George C. Paoli, Yan Cui, Chunlei Shi and Xianming Shi
    Citation: BMC Genomics 2017 18:808
    Content type: Research article Published on:

  31. Betula platyphylla is a common tree species in northern China that has high economic and medicinal value. Our laboratory has been devoted to genome research on B. platyphylla for approximately 10 years. As primar...

    Authors: Sui Wang, Chuanping Yang, Xiyang Zhao, Su Chen and Guan-Zheng Qu
    Citation: BMC Genomics 2018 19:950
    Content type: Research article Published on:

  32. White striping (WS) is an emerging muscular defect occurring on breast and thigh muscles of broiler chickens. It is characterized by the presence of white striations parallel to the muscle fibers and has signi...

    Authors: Eva Pampouille, Cécile Berri, Simon Boitard, Christelle Hennequet-Antier, Stéphane A. Beauclercq, Estelle Godet, Christophe Praud, Yves Jégo and Elisabeth Le Bihan-Duval
    Citation: BMC Genomics 2018 19:202
    Content type: Research article Published on:

  33. Adipose tissue is a major endocrine organ and is thought to play a central role in the metabolic control of reproductive function in cattle. Plane of nutrition during early life has been shown to influence the...

    Authors: Anne-Marie English, Sineád M. Waters, Paul Cormican, Colin J. Byrne, Seán Fair and David A. Kenny
    Citation: BMC Genomics 2018 19:281
    Content type: Research article Published on:

  34. High ambient temperature is known to affect fish gonadal development and physiology in a variety of ways depending on the severity and duration of exposure; however, the underlying molecular mechanisms are poo...

    Authors: Arabinda Mahanty, Gopal Krishna Purohit, Sasmita Mohanty, Nihar Ranjan Nayak and Bimal Prasanna Mohanty
    Citation: BMC Genomics 2017 18:617
    Content type: Research article Published on:

  35. Knowledge Base Commons (KBCommons) v1.1 is a universal and all-inclusive web-based framework providing generic functionalities for storing, sharing, analyzing, exploring, integrating and visualizing multiple o...

    Authors: Shuai Zeng, Zhen Lyu, Siva Ratna Kumari Narisetti, Dong Xu and Trupti Joshi
    Citation: BMC Genomics 2019 20(Suppl 11):947
    Content type: Research Published on:

    This article is part of a Supplement: Volume 20 Supplement 11

  36. The small leucine-rich repeat proteins and proteoglycans (SLRPs) form an important family of regulatory molecules that participate in many essential functions. They typically control the correct assembly of co...

    Authors: Hosil Park, Julie Huxley-Jones, Ray P Boot-Handford, Paul N Bishop, Teresa K Attwood and Jordi Bella
    Citation: BMC Genomics 2008 9:599
    Content type: Research article Published on:

  37. Because they represent the earliest divergences of the Chlorophyta, the morphologically diverse unicellular green algae making up the prasinophytes hold the key to understanding the nature of the first viridip...

    Authors: Claude Lemieux, Christian Otis and Monique Turmel
    Citation: BMC Genomics 2014 15:857
    Content type: Research article Published on:

  38. Little is known about the composition and function of the saliva in black flies such as Simulium guianense, the main vector of river blindness disease in Brazil. The complex salivary potion of hematophagous arthr...

    Authors: Andrezza C Chagas, Eric Calvo, Paulo FP Pimenta and José MC Ribeiro
    Citation: BMC Genomics 2011 12:612
    Content type: Research article Published on:

  39. With the increase in genomic and transcriptomic data produced by the recent advancements in next generation sequencers and microarrays, it is now easier than ever to conduct large-scale comparative genomic stu...

    Authors: Atsushi Ogura, Masa-aki Yoshida, Mutsumi Fukuzaki and Jun Sese
    Citation: BMC Genomics 2010 11(Suppl 4):S9
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 11 Supplement 4

  40. Metagenomic sequence data are proving to be a vast resource for the discovery of biological components. Yet analysis of this data to identify functional RNAs lags behind efforts to characterize protein diversi...

    Authors: Michelle M Meyer, Tyler D Ames, Daniel P Smith, Zasha Weinberg, Michael S Schwalbach, Stephen J Giovannoni and Ronald R Breaker
    Citation: BMC Genomics 2009 10:268
    Content type: Research article Published on:

  41. A current challenge in gene annotation is to define the gene function in the context of the network of relationships instead of using single genes. The inference of gene networks (GNs) has emerged as an approa...

    Authors: Fábio FR Vicente, Fabrício M Lopes, Ronaldo F Hashimoto and Roberto M Cesar Jr
    Citation: BMC Genomics 2012 13(Suppl 6):S7
    Content type: Research Published on:

    This article is part of a Supplement: Volume 13 Supplement 6

  42. Citrus yellow vein clearing virus (CYVCV) is the causative agent of citrus yellow vein clearing disease, and poses a serious threat to the lemon industry in Asia. The common symptoms of CYVCV-infected lemon plant...

    Authors: Yu Bin, Qi Zhang, Yue Su, Chunqing Wang, Qiqi Jiang, Zhen Song and Changyong Zhou
    Citation: BMC Genomics 2023 24:65
    Content type: Research Published on:

  43. Terpenoids are abundant in the foliage of Eucalyptus, providing the characteristic smell as well as being valuable economically and influencing ecological interactions. Quantitative and qualitative inter- and int...

    Authors: Carsten Külheim, Amanda Padovan, Charles Hefer, Sandra T Krause, Tobias G Köllner, Alexander A Myburg, Jörg Degenhardt and William J Foley
    Citation: BMC Genomics 2015 16:450
    Content type: Research article Published on:

  44. Bacteria of the genera Xylanibacter and Segatella are among the most dominant groups in the rumen microbiota. They are characterized by the ability to utilize different hemicelluloses and pectin of plant cell-wal...

    Authors: Urška Murovec and Tomaž Accetto
    Citation: BMC Genomics 2024 25:495
    Content type: Research Published on:

  45. MicroRNAs (miRNAs) are important genetic elements that regulate the expression of thousands of human genes. Polymorphisms affecting miRNA biogenesis, dosage and target recognition may represent potentially fun...

    Authors: Malgorzata Marcinkowska, Maciej Szymanski, Wlodzimierz J Krzyzosiak and Piotr Kozlowski
    Citation: BMC Genomics 2011 12:183
    Content type: Research article Published on:

  46. Lactobacillus salivarius strains are increasingly being exploited for their probiotic properties in humans and animals. Dissemination of antibiotic resistance genes among species with food or probiotic-associatio...

    Authors: Emma J Raftis, Brian M Forde, Marcus J Claesson and Paul W O’Toole
    Citation: BMC Genomics 2014 15:771
    Content type: Research article Published on:

  47. Meat tenderness is the consumer’s most preferred sensory attribute. This trait is affected by a number of factors, including genotype, age, animal sex, and pre- and post-slaughter management. In view of the hi...

    Authors: Larissa Fernanda Simielli Fonseca, Daniele Fernanda Jovino Gimenez, Danielly Beraldo dos Santos Silva, Roger Barthelson, Fernando Baldi, Jesus Aparecido Ferro and Lucia Galvão Albuquerque
    Citation: BMC Genomics 2017 18:945
    Content type: Research article Published on:

  48. Chlamydia pecorum is a globally recognised pathogen of livestock and koalas. To date, comparative genomics of C. pecorum strains from sheep, cattle and koalas has revealed that only si...

    Authors: Martina Jelocnik, Nathan L. Bachmann, Bernhard Kaltenboeck, Courtney Waugh, Lucy Woolford, K. Natasha Speight, Amber Gillett, Damien P. Higgins, Cheyne Flanagan, Garry S. A. Myers, Peter Timms and Adam Polkinghorne
    Citation: BMC Genomics 2015 16:893
    Content type: Research article Published on:

  49. Annexins are an evolutionarily conserved multigene family of calcium-dependent phospholipid binding proteins that play important roles in stress resistance and plant development. They have been relatively well...

    Authors: Lei Xu, Yimiao Tang, Shiqing Gao, Shichao Su, Lin Hong, Weiwei Wang, Zhaofeng Fang, Xueyin Li, Jinxiu Ma, Wei Quan, Hui Sun, Xia Li, Yongbo Wang, Xiangzheng Liao, Jiangang Gao, Fengting Zhang…
    Citation: BMC Genomics 2016 17:415
    Content type: Research article Published on:

  50. Loose silky bentgrass (Apera spica-venti) is an important weed in Europe with a recent increase in herbicide resistance cases. The lack of genetic information about this noxious weed limits its biological underst...

    Authors: Marielle Babineau, Khalid Mahmood, Solvejg K. Mathiassen, Per Kudsk and Michael Kristensen
    Citation: BMC Genomics 2017 18:128
    Content type: Research article Published on:

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BMC Genomics

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