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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 18 of 128

  1. This study aims to characterize the housekeeping and tissue-specific genes in 15 mouse tissues by using the serial analysis of gene expression (SAGE) strategy which indicates the relative level of expression f...

    Authors: Kouame E Kouadjo, Yuichiro Nishida, Jean F Cadrin-Girard, Mayumi Yoshioka and Jonny St-Amand
    Citation: BMC Genomics 2007 8:127
  2. Vertebrate organogenesis is a highly complex process involving sequential cascades of transcription factor activation or repression. Interestingly a single developmental control gene can occasionally be essent...

    Authors: Sumantra Chatterjee, V Sivakamasundari, Sook Peng Yap, Petra Kraus, Vibhor Kumar, Xing Xing, Siew Lan Lim, Joel Sng, Shyam Prabhakar and Thomas Lufkin
    Citation: BMC Genomics 2014 15:1072
  3. Marek’s disease (MD) is a neoplastic disease in chickens caused by the MD virus (MDV). Successful vaccine development against MD has resulted in increased virulence of MDV and the understanding of genetic resi...

    Authors: Apratim Mitra, Juan Luo, Huanming Zhang, Kairong Cui, Keji Zhao and Jiuzhou Song
    Citation: BMC Genomics 2012 13:557
  4. Gcn5 is a transcriptional coactivator with histone acetyltransferase activity that is conserved with regard to structure as well as its histone substrates throughout the eukaryotes. Gene regulatory networks wi...

    Authors: Yongtao Xue-Franzén, Anna Johnsson, David Brodin, Johan Henriksson, Thomas R Bürglin and Anthony PH Wright
    Citation: BMC Genomics 2010 11:200
  5. Cyclocybe aegerita (syn. Agrocybe aegerita) is a commercially cultivated mushroom. Its archetypal agaric morphology and its ability to undergo its whole life cycle under laboratory conditions makes this fungus a ...

    Authors: Axel Orban, Annsophie Weber, Robert Herzog, Florian Hennicke and Martin Rühl
    Citation: BMC Genomics 2021 22:324
  6. Transcription factors activate their target genes by binding to specific response elements. Many transcription factor families evolved from a common ancestor by gene duplication and subsequent divergent evolut...

    Authors: Tobias Brandt, Miriana Petrovich, Andreas C Joerger and Dmitry B Veprintsev
    Citation: BMC Genomics 2009 10:628
  7. Heterobasidion parviporum is an economically most important fungal forest pathogen in northern Europe, causing root and butt rot disease of Norway spruce (Picea abies (L.) Karst.). The mechanisms underlying the p...

    Authors: Zhen Zeng, Hui Sun, Eeva J. Vainio, Tommaso Raffaello, Andriy Kovalchuk, Emmanuelle Morin, Sébastien Duplessis and Fred O. Asiegbu
    Citation: BMC Genomics 2018 19:220
  8. Chitosan oligosaccharide (COS), a deacetylated derivative of chitin, is an abundant, and renewable natural polymer. COS has higher antimicrobial properties than chitosan and is presumed to act by disrupting/pe...

    Authors: Maria DLA Jaime, Luis Vicente Lopez-Llorca, Ana Conesa, Anna Y Lee, Michael Proctor, Lawrence E Heisler, Marinella Gebbia, Guri Giaever, J Timothy Westwood and Corey Nislow
    Citation: BMC Genomics 2012 13:267
  9. Since 2007, bacterial canker caused by Pseudomonas syringae pv. actinidiae (Psa) has become a pandemic disease leading to important economic losses in every country where kiwifruit is widely cultivated. Options f...

    Authors: Vania Michelotti, Antonella Lamontanara, Giampaolo Buriani, Luigi Orrù, Antonio Cellini, Irene Donati, Joel L. Vanneste, Luigi Cattivelli, Gianni Tacconi and Francesco Spinelli
    Citation: BMC Genomics 2018 19:585
  10. Cotton grows in altering environments that are often unfavorable or stressful for its growth and development. Consequently, the plant must cope with abiotic stresses such as soil salinity, drought, and excessi...

    Authors: Yanchao Xu, Richard Odongo Magwanga, Xiu Yang, Dingsha Jin, Xiaoyan Cai, Yuqing Hou, Yangyang Wei, Zhongli Zhou, Kunbo Wang and Fang Liu
    Citation: BMC Genomics 2020 21:15
  11. The process of alternative splicing provides a unique mechanism by which eukaryotes are able to produce numerous protein products from the same gene. Heightened variability in the proteome has been thought to ...

    Authors: Andrew S. Lang, Suzanne H. Austin, Rayna M. Harris, Rebecca M. Calisi and Matthew D. MacManes
    Citation: BMC Genomics 2020 21:251
  12. Forest trees have ecological and economic importance, and Japanese cedar has highly valued wood attributes. Thus, studies of molecular aspects of wood formation offer practical information that may be used for...

    Authors: Kentaro Mishima, Takeshi Fujiwara, Taiichi Iki, Katsushi Kuroda, Kana Yamashita, Miho Tamura, Yoshitake Fujisawa and Atsushi Watanabe
    Citation: BMC Genomics 2014 15:5920

    The Erratum to this article has been published in BMC Genomics 2016 17:803

  13. Classical genetic studies provide strong evidence for heritable contributions to susceptibility to developing dependence on addictive substances. Candidate gene and genome-wide association studies (GWAS) have ...

    Authors: Chuan-Yun Li, Wei-Zhen Zhou, Ping-Wu Zhang, Catherine Johnson, Liping Wei and George R Uhl
    Citation: BMC Genomics 2011 12:508
  14. Regulation of chromatin accessibility and transcription are tightly coordinated processes. Studies in yeast and higher eukaryotes have described accessible chromatin regions, but little work has been done in f...

    Authors: Aileen R. Ferraro, Abigail J. Ameri, Zefu Lu, Masayuki Kamei, Robert J. Schmitz and Zachary A. Lewis
    Citation: BMC Genomics 2021 22:459
  15. Wucai (Brassica campestris L. ssp. chinensis var. rosularis Tsen) is a cold-tolerant plant that is vulnerable to high temperature. This study explored the response mechanism of wucai to low temperature. In this s...

    Authors: Lingyun Yuan, Yushan Zheng, Libing Nie, Liting Zhang, Ying Wu, Shidong Zhu, Jinfeng Hou, Guo Lei Shan, Tong Kun Liu, Guohu Chen, Xiaoyan Tang and Chenggang Wang
    Citation: BMC Genomics 2021 22:687
  16. Genome-wide nucleosome occupancy is negatively related to the average level of transcription factor motif binding based on studies in yeast and several other model organisms. The degree to which nucleosome-mot...

    Authors: Yuanfang Guan, Victoria Yao, Kyle Tsui, Marinella Gebbia, Maitreya J Dunham, Corey Nislow and Olga G Troyanskaya
    Citation: BMC Genomics 2011 12:466
  17. One of the most complex prokaryotic organelles are magnetosomes, which are formed by magnetotactic bacteria as sensors for navigation in the Earth’s magnetic field. In the alphaproteobacterium Magnetospirillum gr...

    Authors: Cornelius N. Riese, Manuel Wittchen, Valérie Jérôme, Ruth Freitag, Tobias Busche, Jörn Kalinowski and Dirk Schüler
    Citation: BMC Genomics 2022 23:699
  18. Growth regulation is a complex process influenced by genetic and environmental factors. We examined differences between growth hormone (GH) transgenic (T) and non-transgenic (NT) coho salmon to elucidate wheth...

    Authors: Erin Kathleen McClelland, Michelle T. T. Chan, Xiang Lin, Dionne Sakhrani, Felicia Vincelli, Jin-Hyoung Kim, Daniel D. Heath and Robert H. Devlin
    Citation: BMC Genomics 2020 21:185
  19. Bacterial RNA polymerase holoenzyme requires sigma70 factors to start transcription by identifying promoter elements. Cyanobacteria possess multiple sigma70 factors to adapt to a wide variety of ecological nic...

    Authors: Marine Gevin, Amel Latifi and Emmanuel Talla
    Citation: BMC Genomics 2024 25:512
  20. Estrogens play an important role in breast cancer (BC) development and progression; when the two isoforms of the estrogen receptor (ERα and ERβ) are co-expressed each of them mediate specific effects of these ...

    Authors: Dougba Noel Dago, Claudio Scafoglio, Antonio Rinaldi, Domenico Memoli, Giorgio Giurato, Giovanni Nassa, Maria Ravo, Francesca Rizzo, Roberta Tarallo and Alessandro Weisz
    Citation: BMC Genomics 2015 16:367
  21. With its unique ability to produce high-voltage electric discharges in excess of 600 volts, the South American strong voltage electric eel (Electrophorus electricus) has played an important role in the history of...

    Authors: Lindsay L Traeger, Jeremy D Volkening, Howell Moffett, Jason R Gallant, Po-Hao Chen, Carl D Novina, George N Phillips Jr, Rene Anand, Gregg B Wells, Matthew Pinch, Robert Güth, Graciela A Unguez, James S Albert, Harold Zakon, Michael R Sussman and Manoj P Samanta
    Citation: BMC Genomics 2015 16:243
  22. The v-erbA oncogene, carried by the Avian Erythroblastosis Virus, derives from the c-erbAα proto-oncogene that encodes the nuclear receptor for triiodothyronine (T3R). v-ErbA transforms erythroid progenitors in v...

    Authors: Corinne Bresson, Celine Keime, Claudine Faure, Yann Letrillard, Maud Barbado, Sandra Sanfilippo, Najate Benhra, Olivier Gandrillon and Sandrine Gonin-Giraud
    Citation: BMC Genomics 2007 8:390
  23. Although microbiota play a critical role in the normal development and function of host immune systems, the underlying mechanisms, especially those involved in the large intestine (LI), remain unknown. In the ...

    Authors: Kaori Munakata, Masahiro Yamamoto, Naoko Anjiki, Mitsue Nishiyama, Sachiko Imamura, Seiichi Iizuka, Kiyoe Takashima, Atsushi Ishige, Kyoji Hioki, Yasuyuki Ohnishi and Kenji Watanabe
    Citation: BMC Genomics 2008 9:192
  24. In higher eukaryotes, small RNAs play a role in regulating gene expression. Overexpression (OE) lines of Arabidopsis thaliana purple acid phosphatase 2 (AtPAP2) were shown to grow faster and exhibit higher ATP an...

    Authors: Chao Liang, Xuan Liu, Yuzhe Sun, Siu-Ming Yiu and Boon Leong Lim
    Citation: BMC Genomics 2014 15:116
  25. A great number of studies have investigated changes induced by morphine exposure in gene expression using several experimental models. In this study, we examined gene expression changes during chronic exposure...

    Authors: M Javier Herrero-Turrión, Iván Rodríguez-Martín, Roger López-Bellido and Raquel E Rodríguez
    Citation: BMC Genomics 2014 15:874
  26. The mediator complex subunits (MED) constitutes a multiprotein complex, with each subunit intricately involved in crucial aspects of plant growth, development, and responses to stress. Nevertheless, scant repo...

    Authors: Le Liang, Dong Wang, Dongmei Xu, Jiachang Xiao, Wen Tang, Xueping Song, Guofeng Yu, Zongxu Liang, Minghui Xie, Zeping Xu, Bo Sun, Yi Tang, Zhi Huang, Yunsong Lai and Huanxiu Li
    Citation: BMC Genomics 2024 25:149
  27. Chronic Allograft Nephropathy (CAN) is a clinical entity of progressive kidney transplant injury. The defining histology is tubular atrophy with interstitial fibrosis (IFTA). Using a meta-analysis of microarra...

    Authors: Amrita Dosanjh, Elizabeth Robison, Tony Mondala, Steven R Head, Daniel R Salomon and Sunil M Kurian
    Citation: BMC Genomics 2013 14:275
  28. The importance of in silico predictions for understanding cellular processes is now widely accepted, and a variety of algorithms useful for studying different biological features have been designed. In particular...

    Authors: Christian Hödar, Rodrigo Assar, Marcela Colombres, Andrés Aravena, Leonardo Pavez, Mauricio González, Servet Martínez, Nibaldo C Inestrosa and Alejandro Maass
    Citation: BMC Genomics 2010 11:348
  29. Genome-wide association studies (GWAS) have identified host genetic variants associated with paratuberculosis (PTB) susceptibility. Most of the GWAS-identified SNPs are in non-coding regions. Connecting these ...

    Authors: Gerard Badia-Bringué, Maria Canive, Nora Fernandez-Jimenez, José Luis Lavín, Rosa Casais, Cristina Blanco-Vázquez, Patricia Vázquez, Almudena Fernández, Jose Ramón Bilbao, Joseba M. Garrido, Ramón A. Juste, Oscar González-Recio and Marta Alonso-Hearn
    Citation: BMC Genomics 2023 24:605
  30. Artificial selection has resulted in animal breeds with extreme phenotypes. As an organism is made up of many different tissues and organs, each with its own genetic programme, it is pertinent to ask: How rele...

    Authors: André LJ Ferraz, Ana Ojeda, Manel López-Béjar, Lana T Fernandes, Anna Castelló, Josep M Folch and Miguel Pérez-Enciso
    Citation: BMC Genomics 2008 9:173
  31. The lateral organ boundaries domain (LBD) gene is a plant-specific transcription factor that plays a critical role in diverse biological processes. However, the evolution and functional divergence of the LBD gene...

    Authors: Bobo Song, Zikai Tang, Xiaolong Li, Jiaming Li, Mingyue Zhang, Kejiao Zhao, Hainan Liu, Shaoling Zhang and Jun Wu
    Citation: BMC Genomics 2020 21:644
  32. Alloplasmic lines provide a unique tool to study nuclear-cytoplasmic interactions. Three alloplasmic lines, with nuclear genomes from Triticum aestivum and harboring cytoplasm from Aegilops uniaristata, Aegilops ...

    Authors: Cristina Crosatti, Lydia Quansah, Caterina Maré, Lorenzo Giusti, Enrica Roncaglia, Sergio G Atienza, Luigi Cattivelli and Aaron Fait
    Citation: BMC Genomics 2013 14:868
  33. While studying long-lived mutants has advanced our understanding of the processes involved in ageing, the mechanisms underlying natural variation in lifespan and ageing rate remain largely unknown. Here, we ch...

    Authors: Agnieszka Doroszuk, Martijs J Jonker, Nicolien Pul, Timo M Breit and Bas J Zwaan
    Citation: BMC Genomics 2012 13:167
  34. Production of D-xylonate by the yeast S. cerevisiae provides an example of bioprocess development for sustainable production of value-added chemicals from cheap raw materials or side streams. Production of D-xylo...

    Authors: Dominik Mojzita, Merja Oja, Eija Rintala, Marilyn Wiebe, Merja Penttilä and Laura Ruohonen
    Citation: BMC Genomics 2014 15:763
  35. DNA methylation has an important role in intergenerational inheritance. An increasing number of studies have reported evidence of germline inheritance of DNA methylation induced by nutritional signals in mamma...

    Authors: Takaya Saito, Paul Whatmore, John F. Taylor, Jorge M. O. Fernandes, Anne-Catrin Adam, Douglas R. Tocher, Marit Espe and Kaja H. Skjærven
    Citation: BMC Genomics 2022 23:115
  36. Pasteurella multocida is a gram-negative bacterial pathogen that has a broad host range. One of the diseases it causes is fowl cholera in poultry. The availability of the genome sequence of avian P. multocida iso...

    Authors: Bindu Nanduri, Leslie A Shack, Shane C Burgess and Mark L Lawrence
    Citation: BMC Genomics 2009 10(Suppl 2):S4

    This article is part of a Supplement: Volume 10 Supplement 2

  37. The ray and disc florets on the chrysanthemum capitulum are morphologically diverse and have remarkably abundant variant types, resulting in a rich variety of flower types. An anemone shape with pigmented and ...

    Authors: Jiawei Fan, Jialu Huang, Ya Pu, Yajing Niu, Mengmeng Zhang, Silan Dai and He Huang
    Citation: BMC Genomics 2022 23:846
  38. Osteoporosis is frequently observed among aging hens from egg-producing strains (layers) of domestic chicken. White Leghorn (WL) has been intensively selected for egg production and it manifests striking pheno...

    Authors: Carl-Johan Rubin, Johan Lindberg, Carolyn Fitzsimmons, Peter Savolainen, Per Jensen, Joakim Lundeberg, Leif Andersson and Andreas Kindmark
    Citation: BMC Genomics 2007 8:208
  39. Wheat is a major crop in the world, and the high temperature stress can reduce the yield of wheat by as much as 15%. The molecular changes in response to heat stress are poorly understood. Using GeneChip® Wheat G...

    Authors: Dandan Qin, Haiyan Wu, Huiru Peng, Yingyin Yao, Zhongfu Ni, Zhenxing Li, Chunlei Zhou and Qixin Sun
    Citation: BMC Genomics 2008 9:432
  40. Mycobacterium smegmatis is a saprophytic bacterium frequently used as a genetic surrogate to study pathogenic Mycobacterium tuberculosis. The PrrAB two-component genetic regulatory system is essential in M. tuber...

    Authors: Jason D. Maarsingh, Shanshan Yang, Jin G. Park and Shelley E. Haydel
    Citation: BMC Genomics 2019 20:942

    The Correction to this article has been published in BMC Genomics 2019 21:1

  41. Paulownia witches’ broom (PaWB) is a fatal disease of Paulownia caused by a phytoplasma. In previous studies, we found that plants with PaWB symptoms would revert to a healthy morphology after methyl methane s...

    Authors: Guoqiang Fan, Xibing Cao, Suyan Niu, Minjie Deng, Zhenli Zhao and Yanpeng Dong
    Citation: BMC Genomics 2015 16:896
  42. Macrobrachium nipponense is an economically important species of freshwater shrimp in China. Unlike other marine shrimps, the ovaries in adult female M. nipponense can mature rapidly and periodically during the r...

    Authors: Yuning Zhang, Sufei Jiang, Hui Qiao, Yiwei Xiong, Hongtuo Fu, Wenyi Zhang, Yongsheng Gong, Shubo Jin and Yan Wu
    Citation: BMC Genomics 2021 22:510
  43. The present study coupled expression profiling with chromatin immunoprecipitation sequencing (ChIP-seq) to examine peroxisome proliferator-activated receptor-β/δ (PPARβ/δ)-dependent regulation of gene expressi...

    Authors: Combiz Khozoie, Michael G Borland, Bokai Zhu, Songjoon Baek, Sam John, Gordon L Hager, Yatrik M Shah, Frank J Gonzalez and Jeffrey M Peters
    Citation: BMC Genomics 2012 13:665
  44. Transcription factors regulate gene expression by binding to transcription factor binding sites (TFBSs). Most models for predicting TFBSs are based on position weight matrices (PWMs), which require a specific ...

    Authors: Sebastian Proft, Janna Leiz, Udo Heinemann, Dominik Seelow, Kai M. Schmidt-Ott and Maria Rutkiewicz
    Citation: BMC Genomics 2023 24:736
  45. The endosteum of the bone marrow provides a specialized hypoxic niche that may serve to preserve the integrity, pluripotency, longevity and stemness of resident mesenchymal stem cells (MSCs). To explore the mo...

    Authors: Xinyang Hu, Rongrong Wu, Lina A Shehadeh, Qing Zhou, Cizhong Jiang, Xin Huang, Ling Zhang, Feng Gao, Xianbao Liu, Hong Yu, Keith A Webster and Jian’an Wang
    Citation: BMC Genomics 2014 15:303
  46. Selection for exercise-adapted phenotypes in the Thoroughbred racehorse has provided a valuable model system to understand molecular responses to exercise in skeletal muscle. Exercise stimulates immediate earl...

    Authors: Beatrice A McGivney, Suzanne S Eivers, David E MacHugh, James N MacLeod, Grace M O'Gorman, Stephen DE Park, Lisa M Katz and Emmeline W Hill
    Citation: BMC Genomics 2009 10:638
  47. The distribution and deposition of fat tissue in different parts of the body are the key factors affecting the carcass quality and meat flavour of chickens. Intramuscular fat (IMF) content is an important fact...

    Authors: Meng Zhang, Fang Li, Xiang-fei Ma, Wen-ting Li, Rui-rui Jiang, Rui-li Han, Guo-xi Li, Yan-bin Wang, Zi-yi Li, Ya-dong Tian, Xiang-tao Kang and Gui-rong Sun
    Citation: BMC Genomics 2019 20:743
  48. Exploring the hypoxia adaptation mechanism of Tibetan chicken is of great significance for revealing the survival law of Tibetan chicken and plateau animal husbandry production. To investigate the hypoxia adap...

    Authors: Mingming Xue, Runjie Yu, Lixian Yang, Fuyin Xie, Meiying Fang and Qiguo Tang
    Citation: BMC Genomics 2024 25:131
  49. Dendrobium huoshanense C.Z. Tang et S.J. Cheng is a traditional Chinese herbal medicine with high medicinal value in China. Polysaccharides and alkaloids are its main active ingredients. To understand the differe...

    Authors: Yingdan Yuan, Maoyun Yu, Zhaohui Jia, Xue’er Song, Yingquan Liang and Jinchi Zhang
    Citation: BMC Genomics 2018 19:978

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