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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 6 of 128

  1. In the course of replication of eukaryotic chromosomes, the telomere length is maintained due to activity of telomerase, the ribonucleoprotein reverse transcriptase. Abolishing telomerase function causes progr...

    Authors: Alexey V. Beletsky, Alexander N. Malyavko, Maria V. Sukhanova, Eugenia S. Mardanova, Maria I. Zvereva, Olga A. Petrova, Yulia Yu. Parfenova, Maria P. Rubtsova, Andrey V. Mardanov, Olga I. Lavrik, Olga A. Dontsova and Nikolai V. Ravin
    Citation: BMC Genomics 2017 18:492
    Content type: Research article Published on:

  2. The TATA-box and TATA-variants are regulatory elements involved in the formation of a transcription initiation complex. Both have been conserved throughout evolution in a restricted region close to the Transcr...

    Authors: Virginie Bernard, Véronique Brunaud and Alain Lecharny
    Citation: BMC Genomics 2010 11:166
    Content type: Research article Published on:

  3. The plant homeodomain (PHD) finger is a Cys4HisCys3-type zinc finger which promotes protein-protein interactions and binds to the cis-acting elements in the promoter regions of target genes. In Medicago truncatul...

    Authors: Wenli Quan, Xun Liu, Lihua Wang, Mingzhu Yin, Li Yang and Zhulong Chan
    Citation: BMC Genomics 2019 20:982
    Content type: Research article Published on:

  4. Recent chromatin immunoprecipitation (ChIP) experiments in fly, mouse, and human have revealed the existence of high-occupancy target (HOT) regions or “hotspots” that show enrichment across many assayed DNA-bi...

    Authors: Lucas D Ward, Junbai Wang and Harmen J Bussemaker
    Citation: BMC Genomics 2014 15:494
    Content type: Research article Published on:

  5. Latent tuberculosis infection is attributed in part to the existence of Mycobacterium tuberculosis in a persistent non-replicating dormant state that is associated with tolerance to host defence mechanisms and an...

    Authors: Malobi Nandi, Kriti Sikri, Neha Chaudhary, Shekhar Chintamani Mande, Ravi Datta Sharma and Jaya Sivaswami Tyagi
    Citation: BMC Genomics 2019 20:887
    Content type: Research article Published on:

  6. Quiescent cells have a low level of gene activity compared to growing cells. Using a yeast model for cellular quiescence, we defined the genome-wide profiles of three species of histone methylation associated ...

    Authors: Conor P. Young, Cory Hillyer, Karsten Hokamp, Darren J. Fitzpatrick, Nikifor K. Konstantinov, Jacqueline S. Welty, Scott A. Ness, Margaret Werner-Washburne, Alastair B. Fleming and Mary Ann Osley
    Citation: BMC Genomics 2017 18:107
    Content type: Research article Published on:

  7. Bovine leukemia virus (BLV) is associated with enzootic bovine leukosis and is closely related to human T-cell leukemia virus type I. The Tax protein of BLV is a transcriptional activator of viral replication ...

    Authors: Mariluz Arainga, Eri Takeda and Yoko Aida
    Citation: BMC Genomics 2012 13:121
    Content type: Research article Published on:

  8. Somatic embryogenesis (SE) is a promising technology for plant vegetative propagation, which has an important role in tree breeding. Though rubber tree (Hevea brasiliensis Muell. Arg.) SE has been founded, few la...

    Authors: Ying Wang, Hui-Liang Li, Yong-Kai Zhou, Dong Guo, Jia-Hong Zhu and Shi-Qing Peng
    Citation: BMC Genomics 2021 22:183
    Content type: Research article Published on:

  9. MADS-box genes encode transcription factors that are involved in developmental control and signal transduction in eukaryotes. In plants, they are associated to numerous development processes most notably those...

    Authors: Jérôme Grimplet, José Miguel Martínez-Zapater and María José Carmona
    Citation: BMC Genomics 2016 17:80
    Content type: Research article Published on:

  10. WD40 transcription factors (TFs) constitute a large gene family in eukaryotes, playing diverse roles in cellular processes. However, their functions in the major ornamental plant, Rhododendron simsii, remain poor...

    Authors: Cheng Wang, Yafang Tang, Yan Li, Chao Hu, Jingyi Li and Ang Lyu
    Citation: BMC Genomics 2023 24:488
    Content type: Research Published on:

  11. Monocytes are key mediators of innate immunity to infection, undergoing profound and dynamic changes in epigenetic state and immune function which are broadly protective but may be dysregulated in disease. Her...

    Authors: Harindra E. Amarasinghe, Ping Zhang, Justin P. Whalley, Alice Allcock, Gabriele Migliorini, Andrew C. Brown, Giuseppe Scozzafava and Julian C. Knight
    Citation: BMC Genomics 2023 24:595
    Content type: Research Published on:

  12. Cassava mosaic disease (CMD), caused by Sri Lankan cassava mosaic virus (SLCMV) infection, has been identified as a major pernicious disease in Manihot esculenta Crantz (cassava) plantations. It is widespread in ...

    Authors: Somruthai Chaowongdee, Nattachai Vannatim, Srihunsa Malichan, Nattakorn Kuncharoen, Pumipat Tongyoo and Wanwisa Siriwan
    Citation: BMC Genomics 2024 25:436
    Content type: Research Published on:

  14. In cold and temperate zones, seasonal reproduction plays a crucial role in the survival and reproductive success of species. The photoperiod influences reproductive processes in seasonal breeders through the h...

    Authors: Jianye Chang, Yanglong Xu, Yuting Fu, Jiaxin Liu, Danli Jiang, Jianqiu Pan, Hongjia Ouyang, Wenjun Liu, Jin Xu, Yunbo Tian, Yunmao Huang, Jue Ruan and Xu Shen
    Citation: BMC Genomics 2024 25:197
    Content type: Research Published on:

  15. O1 Regulation of genes by telomere length over long distances

    Authors: Jerry W. Shay, Noriko Homma, Ruyun Zhou, Muhammad Imran Naseer, Adeel G. Chaudhary, Mohammed Al-Qahtani, Nobutaka Hirokawa, Maryam Goudarzi, Albert J. Fornace Jr., Saleh Baeesa, Deema Hussain, Mohammed Bangash, Fahad Alghamdi, Hans-Juergen Schulten, Angel Carracedo, Ishaq Khan…
    Citation: BMC Genomics 2016 17(Suppl 6):487
    Content type: Meeting abstracts Published on:

    This article is part of a Supplement: Volume 17 Supplement 6

  16. Viruses are among the most destructive and difficult to control plant pathogens. Melon (Cucumis melo L.) has become the model species for the agriculturally important Cucurbitaceae family. Approaches that take ad...

    Authors: Cristina Gómez-Aix, Laura Pascual, Joaquín Cañizares, María Amelia Sánchez-Pina and Miguel A. Aranda
    Citation: BMC Genomics 2016 17:429
    Content type: Research article Published on:

  17. The family of NAC proteins (NAM, ATAF1/2, and CUC2) represent a class of large plant-specific transcription factors. However, identification and functional surveys of NAC genes of tomato (Solanum lycopersicum) re...

    Authors: Jian Feng Jin, Zhan Qi Wang, Qi Yu He, Jia Yi Wang, Peng Fei Li, Ji Ming Xu, Shao Jian Zheng, Wei Fan and Jian Li Yang
    Citation: BMC Genomics 2020 21:288
    Content type: Research article Published on:

  18. Transcription regulatory networks are composed of protein-DNA interactions between transcription factors and their target genes. A long-term goal in genome biology is to map protein-DNA interaction networks of...

    Authors: M Inmaculada Barrasa, Philippe Vaglio, Fabien Cavasino, Laurent Jacotot and Albertha JM Walhout
    Citation: BMC Genomics 2007 8:21
    Content type: Database Published on:

  19. Transcriptional networks coordinate adipocyte differentiation and energy metabolism in rodents. The level of fiber and starch in diets with adequate energy content fed to young cattle has the potential to alte...

    Authors: Daniel E Graugnard, Paola Piantoni, Massimo Bionaz, Larry L Berger, Dan B Faulkner and Juan J Loor
    Citation: BMC Genomics 2009 10:142
    Content type: Research article Published on:

  20. Lily is an economically important plant, with leaves and bulbs consisting of overlapping scales, large ornamental flowers and a very large genome. Although it is recognized that flowers and bulb scales are mod...

    Authors: Fang Du, Junmiao Fan, Ting Wang, Yun Wu, Donald Grierson, Zhongshan Gao and Yiping Xia
    Citation: BMC Genomics 2017 18:899
    Content type: Research article Published on:

  21. Soybean is an important crop that provides valuable proteins and oils for human use. Because soybean growth and development is extremely sensitive to water deficit, quality and crop yields are severely impacte...

    Authors: Li M Chen, Xin A Zhou, Wen B Li, Wei Chang, Rong Zhou, Cheng Wang, Ai H Sha, Zhi H Shan, Chan J Zhang, De Z Qiu, Zhong L Yang and Shui L Chen
    Citation: BMC Genomics 2013 14:687
    Content type: Research article Published on:

  22. Set comparisons of differentially expressed genes (DEGs) between whole root and epidermis transcript measurements identified differences in magnitude and timing of organ-level vs. epidermis-specific responses. Ut...

    Authors: Selene R. Schmittling, DurreShahwar Muhammad, Samiul Haque, Terri A. Long and Cranos M. Williams
    Citation: BMC Genomics 2023 24:620
    Content type: Research Published on:

  23. The toxigenic fungal plant pathogen Fusarium graminearum compromises wheat production worldwide. Azole fungicides play a prominent role in controlling this pathogen. Sequencing of its genome stimulated the develo...

    Authors: Rayko Becher, Fabian Weihmann, Holger B Deising and Stefan GR Wirsel
    Citation: BMC Genomics 2011 12:52
    Content type: Research article Published on:

  24. SUMOylation, as part of the epigenetic regulation of transcription, has been intensively studied in lower eukaryotes that contain only a single SUMO protein; however, the functions of SUMOylation during mammal...

    Authors: Pei-Ching Chang, Chia-Yang Cheng, Mel Campbell, Yi-Cheng Yang, Hung-Wei Hsu, Ting-Yu Chang, Chia-Han Chu, Yi-Wei Lee, Chiu-Lien Hung, Shi-Mei Lai, Clifford G Tepper, Wen-Ping Hsieh, Hsei-Wei Wang, Chuan-Yi Tang, Wen-Ching Wang and Hsing-Jien Kung
    Citation: BMC Genomics 2013 14:824
    Content type: Research article Published on:

  25. Delayed or secondary cell death that is caused by a cascade of cellular and molecular processes initiated by traumatic brain injury (TBI) may be reduced or prevented if an effective neuroprotective strategy is...

    Authors: Todd E. White, Monique C. Surles-Zeigler, Gregory D. Ford, Alicia S. Gates, Benem Davids, Timothy Distel, Michelle C. LaPlaca and Byron D. Ford
    Citation: BMC Genomics 2016 17:130
    Content type: Research article Published on:

  26. Comparative genomics has emerged as a promising means of unravelling the molecular networks underlying complex traits such as drought tolerance. Here we assess the genotype-dependent component of the drought-i...

    Authors: David Cohen, Marie-Béatrice Bogeat-Triboulot, Emilie Tisserant, Sandrine Balzergue, Marie-Laure Martin-Magniette, Gaëlle Lelandais, Nathalie Ningre, Jean-Pierre Renou, Jean-Philippe Tamby, Didier Le Thiec and Irène Hummel
    Citation: BMC Genomics 2010 11:630
    Content type: Research article Published on:

  27. In all Metazoa, transcription is inactive during the first mitotic cycles after fertilisation. In Drosophila melanogaster, Zygotic Genome Activation (ZGA) occurs in two waves, starting respectively at mitotic cyc...

    Authors: Elodie Darbo, Carl Herrmann, Thomas Lecuit, Denis Thieffry and Jacques van Helden
    Citation: BMC Genomics 2013 14:226
    Content type: Research article Published on:

  28. Colossoma macropomum (tambaqui) and Piaractus mesopotamicus (pacu) are good fish species for aquaculture. The tambacu, individuals originating from the induced hybridization of the female tambaqui with the male p...

    Authors: Bruno E. A. Fantinatti, Erika S. Perez, Bruna T. T. Zanella, Jéssica S. Valente, Tassiana G. de Paula, Edson A. Mareco, Robson F. Carvalho, Silvano Piazza, Michela A. Denti and Maeli Dal-Pai-Silva
    Citation: BMC Genomics 2021 22:237
    Content type: Research article Published on:

  29. Downy mildew is a destructive grapevine disease caused by Plasmopara viticola (Berk. and Curt.) Berl. and de Toni, which can only be controlled by intensive fungicide treatments. Natural sources of resistance fro...

    Authors: Marianna Polesani, Luisa Bortesi, Alberto Ferrarini, Anita Zamboni, Marianna Fasoli, Claudia Zadra, Arianna Lovato, Mario Pezzotti, Massimo Delledonne and Annalisa Polverari
    Citation: BMC Genomics 2010 11:117
    Content type: Research article Published on:

  30. Ginseng is an important medicinal herb in Asia and Northern America. The basic leucine zipper (bZIP) transcription factor genes play important roles in many biological processes and plant responses to abiotic and...

    Authors: Hongjie Li, Jing Chen, Qi Zhao, Yilai Han, Li Li, Chunyu Sun, Kangyu Wang, Yanfang Wang, Mingzhu Zhao, Ping Chen, Jun Lei, Yi Wang and Meiping Zhang
    Citation: BMC Genomics 2021 22:316
    Content type: Research article Published on:

  31. The mosquito Anopheles gambiae is a major vector of human malaria. Increasing evidence indicates that blood cells (hemocytes) comprise an essential arm of the mosquito innate immune response against both bacteria...

    Authors: Luke A Baton, Anne Robertson, Emma Warr, Michael R Strand and George Dimopoulos
    Citation: BMC Genomics 2009 10:257
    Content type: Research article Published on:

  32. The transcriptional changes around zygotic genome activation (ZGA) in preimplantation embryos are critical for studying mechanisms of embryonic developmental arrest and searching for key transcription factors....

    Authors: Yanhui Zhai, Hao Yu, Xinglan An, Zhiren Zhang, Meng Zhang, Sheng Zhang, Qi Li and Ziyi Li
    Citation: BMC Genomics 2022 23:772
    Content type: Research Published on:

  33. Trichophyton rubrum is a cosmopolitan filamentous fungus that can infect human keratinized tissue (skin, nails and, rarely, hair) and is the major agent of all chronic and recurrent de...

    Authors: Tamires Aparecida Bitencourt, Claudia Macedo, Matheus Eloy Franco, Amanda Freire Assis, Tatiana Takahasi Komoto, Eliana Guedes Stehling, Rene Oliveira Beleboni, Iran Malavazi, Mozart Marins and Ana Lúcia Fachin
    Citation: BMC Genomics 2016 17:249
    Content type: Research article Published on:

  35. Drought stress is one of the major factors that affects wheat yield. Glyceraldehyde-3-Phosphate dehydrogenase (GAPDH) is a multifunctional enzyme that plays the important role in abiotic stress and plant devel...

    Authors: Lin Zhang, Zhiyong Xu, Haikun Ji, Ye Zhou and Shushen Yang
    Citation: BMC Genomics 2019 20:795
    Content type: Research article Published on:

  36. The nucleolus is a large nuclear body that serves as the primary site for ribosome biogenesis. Recent studies have suggested that it also plays an important role in organizing chromatin architecture. However,...

    Authors: Trevor F. Freeman, Qiuxia Zhao, Agustian Surya, Reed Rothe and Elif Sarinay Cenik
    Citation: BMC Genomics 2023 24:512
    Content type: Software Published on:

  37. Transcription factors (TFs) exhibit heterogeneous DNA-binding specificities in individual cells and whole organisms under natural conditions, and de novo motif discovery usually provides multiple motifs, even ...

    Authors: Saeko Tahara, Takaho Tsuchiya, Hirotaka Matsumoto and Haruka Ozaki
    Citation: BMC Genomics 2023 24:597
    Content type: Research Published on:

  38. The Leucine-responsive Regulatory Protein (Lrp) family is a widespread family of regulatory transcription factors in prokaryotes. BarR is an Lrp-like transcription factor in the model archaeon Sulfolobus acidocal...

    Authors: Han Liu, Kun Wang, Ann-Christin Lindås and Eveline Peeters
    Citation: BMC Genomics 2016 17:569
    Content type: Research article Published on:

  39. Domestic yaks play an indispensable role in sustaining the livelihood of Tibetans and other ethnic groups on the Qinghai-Tibetan Plateau (QTP), by providing milk and meat. They have evolved numerous physiologi...

    Authors: Jinwei Xin, Zhixin Chai, Chengfu Zhang, Qiang Zhang, Yong Zhu, Hanwen Cao, Cidan Yangji, Xiaoying Chen, Hui Jiang, Jincheng Zhong and Qiumei Ji
    Citation: BMC Genomics 2020 21:731
    Content type: Research article Published on:

  40. The cis-regulatory element became increasingly important for resistance breeding. There were many DNA variations identified by resequencing. To investigate the links between the DNA variations and cis-regulato...

    Authors: Qijun Xu, Shunmou Huang, Ganggang Guo, Chunbao Yang, Mu Wang, Xingquan Zeng and Yulin Wang
    Citation: BMC Genomics 2022 23:843
    Content type: Research Published on:

  41. In cold regions, low temperature is the main limiting factor affecting grape production. As an important breeding resource, V. amurensis Rupr. has played a crucial role in the discovery of genes which confer cold...

    Authors: Xiaolele Ma, Fangyuan Zhao, Kai Su, Hong Lin and Yinshan Guo
    Citation: BMC Genomics 2022 23:551
    Content type: Research Published on:

  42. Gelsemium elegans is a traditional Chinese medicinal plant and temperature is one of the key factors affecting its growth. RAV (related to ABI3/VP1) transcription factor plays multiple roles in higher plants, inc...

    Authors: Tianzhen Cui, Shoujian Zang, Xinlu Sun, Jing Zhang, Yachun Su, Dongjiao Wang, Guran Wu, Ruiqi Chen, Youxiong Que, Qing Lin and Chuihuai You
    Citation: BMC Genomics 2024 25:22
    Content type: Research Published on:

  43. HIP1 Protein Interactor (HIPPI) is a pro-apoptotic protein that induces Caspase8 mediated apoptosis in cell. We have shown earlier that HIPPI could interact with a specific 9 bp sequence motif, defined as the ...

    Authors: Moumita Datta, Ananyo Choudhury, Ansuman Lahiri and Nitai P Bhattacharyya
    Citation: BMC Genomics 2011 12:463
    Content type: Research article Published on:

  44. MYB transcription factor (TF) is one of the largest families of TFs in plants and play essential roles in plant growth and development, and is involved in responses to biological and abiotic stress. However, t...

    Authors: Hongjie Wang, Xiangli Yin, Dan Du, Zhongyi Liang, Zhenzhen Han, Hai Nian and Qibin Ma
    Citation: BMC Genomics 2022 23:529
    Content type: Research Published on:

  45. Previously we have examined the effect of maternal dietary n-3 long-chain polyunsaturated fatty acid (LCPUFA) supplementation during pregnancy on offspring fat mass. Considering the involvement of the placenta...

    Authors: Eva-Maria Sedlmeier, Stefanie Brunner, Daniela Much, Philipp Pagel, Susanne E Ulbrich, Heinrich HD Meyer, Ulrike Amann-Gassner, Hans Hauner and Bernhard L Bader
    Citation: BMC Genomics 2014 15:941
    Content type: Research article Published on:

  46. Natural antisense transcripts (NATs) are transcripts of the opposite DNA strand to the sense-strand either at the same locus (cis-encoded) or a different locus (trans-encoded). They can affect gene expression at ...

    Authors: Tristan E Coram, Matthew L Settles and Xianming Chen
    Citation: BMC Genomics 2009 10:253
    Content type: Research article Published on:

  48. Unmethylated stretches of CpG dinucleotides (CpG islands) are an outstanding property of mammal genomes. Conventionally, these regions are detected by sliding window approaches using %G + C, CpG observed/expec...

    Authors: Michael Hackenberg, Guillermo Barturen, Pedro Carpena, Pedro L Luque-Escamilla, Christopher Previti and José L Oliver
    Citation: BMC Genomics 2010 11:327
    Content type: Research article Published on:

  50. Decades of intensive genetic selection in the domestic chicken (Gallus gallus domesticus) have enabled the remarkable rapid growth of today’s broiler (meat-type) chickens. However, this enhanced growth rate was a...

    Authors: C. W. Resnyk, W. Carré, X. Wang, T. E. Porter, J. Simon, E. Le Bihan-Duval, M. J. Duclos, S. E. Aggrey and L. A. Cogburn
    Citation: BMC Genomics 2017 18:626
    Content type: Research article Published on:

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