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6357 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Egg quality is an important aspect in rainbow trout farming. Post-ovulatory aging is one of the most important factors affecting egg quality. MicroRNAs (miRNAs) are the major regulators in various biological p...

    Authors: Hao Ma, Gregory M Weber, Mark A Hostuttler, Hairong Wei, Lei Wang and Jianbo Yao
    Citation: BMC Genomics 2015 16:201
    Content type: Research article Published on:

  2. Branchiopod crustaceans in the genus Daphnia are key model organisms for investigating interactions between genes and the environment. One major theme of research on Daphnia species has been the evolution of resi...

    Authors: Seanna J McTaggart, Claire Conlon, John K Colbourne, Mark L Blaxter and Tom J Little
    Citation: BMC Genomics 2009 10:175
    Content type: Research article Published on:

  3. Reporter methods to quantitatively measure the efficiency and specificity of genome editing tools are important for the development of novel editing techniques and successful applications of available ones. Ho...

    Authors: Akhilesh Kumar, Michael D. Birnbaum, Balaji T. Moorthy, Jayanti Singh, Anna Palovcak, Devang M. Patel and Fangliang Zhang
    Citation: BMC Genomics 2019 20:609
    Content type: Methodology article Published on:

  4. Malaria continues to be one of the most severe global infectious diseases, responsible for 1-2 million deaths yearly. The rapid evolution and spread of drug resistance in parasites has led to an urgent need fo...

    Authors: Timothy G Lilburn, Hong Cai, Zhan Zhou and Yufeng Wang
    Citation: BMC Genomics 2011 12(Suppl 5):S9
    Content type: Research article Published on:

    This article is part of a Supplement: Volume 12 Supplement 5

  5. Researchers often measure changes in gene expression across conditions to better understand the shared functional roles and regulatory mechanisms of different genes. Analogous to this is comparing gene express...

    Authors: Alexander L. Cope, Brian C. O’Meara and Michael A. Gilchrist
    Citation: BMC Genomics 2020 21:370
    Content type: Research Article Published on:

  6. Increasing evidence has shown that circular RNAs (circRNAs) are involved in neurodegenerative disorders, but their roles in neurological toxoplasmosis are yet to know. This study examined miRNA and circRNA exp...

    Authors: Chun-Xue Zhou, Kang Ai, Cui-Qin Huang, Jing-Jing Guo, Hua Cong, Shen-Yi He and Xing-Quan Zhu
    Citation: BMC Genomics 2020 21:46
    Content type: Research article Published on:

  7. Phenomics provides new technologies and platforms as a systematic phenome-genome approach. However, few studies have reported on the systematic mining of shared genetics among clinical biochemical indices base...

    Authors: Yanling Hu, Aihua Tan, Lei Yu, Chenyang Hou, Haofa Kuang, Qunying Wu, Jinghan Su, Qingniao Zhou, Yuanyuan Zhu, Chenqi Zhang, Wei Wei, Lianfeng Li, Weidong Li, Yuanjie Huang, Hongli Huang, Xing Xie…
    Citation: BMC Genomics 2019 20:983
    Content type: Research article Published on:

  8. Tomato has excellent genetic and genomic resources including a broad set of Expressed Sequence Tag (EST) data and high-density genetic maps. In addition, emerging physical maps and bacterial artificial clone s...

    Authors: Allen Van Deynze, Kevin Stoffel, C Robin Buell, Alexander Kozik, Jia Liu, Esther van der Knaap and David Francis
    Citation: BMC Genomics 2007 8:465
    Content type: Research article Published on:

  11. MicroRNAs (miRNAs) are short non-coding regulatory RNAs that control gene expression usually producing translational repression and gene silencing. High-throughput sequencing technologies have revealed heterog...

    Authors: Franc Llorens, Mónica Bañez-Coronel, Lorena Pantano, Jose Antonio del Río, Isidre Ferrer, Xavier Estivill and Eulàlia Martí
    Citation: BMC Genomics 2013 14:104
    Content type: Research article Published on:

  12. Fusarium graminearum is a destructive fungal pathogen of wheat, barley and other small grain cereals. During plant infection, the pathogen produces trichothecene mycotoxin deoxynivalenol (DON), which is harmful t...

    Authors: Shanyue Zhou and Chunlan Wu
    Citation: BMC Genomics 2019 20:841
    Content type: Research article Published on:

  13. Cytoplasmic male sterility (CMS) is a natural phenomenon of pollen abortion caused by the interaction between cytoplasmic genes and nuclear genes. CMS is a simple and effective pollination control system, and ...

    Authors: Linfeng Chen, Xianlong Ding, Hao Zhang, Tingting He, Yanwei Li, Tanliu Wang, Xiaoqiang Li, Ling Jin, Qijian Song, Shouping Yang and Junyi Gai
    Citation: BMC Genomics 2018 19:663
    Content type: Research article Published on:

  15. Individuals in the same species are assumed to share the same genomic set. However, it is not unusual to find an orthologous gene only in small subset of the species, and recent genomic studies suggest that st...

    Authors: Jing Ding, Hitoshi Araki, Qiang Wang, Pengfei Zhang, Sihai Yang, Jian-Qun Chen and Dacheng Tian
    Citation: BMC Genomics 2007 8:154
    Content type: Research article Published on:

  16. Being critically important to the ecosystem, the stability of coral reefs is directly related to the marine and surrounding terrestrial environments. However, coral reefs are now undergoing massive and acceler...

    Authors: Chen Huang, Dongliang Leng, Shixue Sun and Xiaohua Douglas Zhang
    Citation: BMC Genomics 2019 20:48
    Content type: Research article Published on:

  17. Low density arrays (LDAs) have recently been introduced as a novel approach to gene expression profiling. Based on real time quantitative RT-PCR (QRT-PCR), these arrays enable a more focused and sensitive appr...

    Authors: Andrew B Goulter, Daniel W Harmer and Kenneth L Clark
    Citation: BMC Genomics 2006 7:34
    Content type: Research article Published on:

  18. Anthocyanins perform diverse biological functions in plants and are beneficial to human health. Leaf color is the most important trait of ornamental kale and the characteristics of changes in leaf color make i...

    Authors: Ning Guo, Shuo Han, Mei Zong, Guixiang Wang, Shuning Zheng and Fan Liu
    Citation: BMC Genomics 2019 20:564
    Content type: Research article Published on:

  19. In order to have a better understanding of unexplained heritability for complex diseases in conventional Genome-Wide Association Studies (GWAS), aggregated association analyses based on predefined functional r...

    Authors: Meng Lu, Hye-Seung Lee, David Hadley, Jianhua Z Huang and Xiaoning Qian
    Citation: BMC Genomics 2014 15(Suppl 1):S10
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 15 Supplement 1

  20. Walnut is an important economic tree species while confronting with global environmental stress, resulting in decline in quality and yield. Therefore, it is urgent to elucidate the molecular mechanism for the ...

    Authors: Chen Sisi, Deng Jieru, Cheng Peidong, Zhang Zhaolong, Wang Yihang, Chen Shuwen, Tang Yan, Wang Tianyu and Yang Guiyan
    Citation: BMC Genomics 2022 23:640
    Content type: Research Published on:

  21. Lipids are important for the cell and organism life since they are major components of membranes, energy reserves and are also signal molecules. The main organs for the energy synthesis and storage are the liv...

    Authors: Kevin Muret, Colette Désert, Laetitia Lagoutte, Morgane Boutin, Florence Gondret, Tatiana Zerjal and Sandrine Lagarrigue
    Citation: BMC Genomics 2019 20:882
    Content type: Review Published on:

  22. MicroRNAs are a class of small non-coding RNAs that regulate mRNA expression at the post - transcriptional level and thereby many fundamental biological processes. A number of methods, such as multiplex polyme...

    Authors: Candida Vaz, Hafiz M Ahmad, Pratibha Sharma, Rashi Gupta, Lalit Kumar, Ritu Kulshreshtha and Alok Bhattacharya
    Citation: BMC Genomics 2010 11:288
    Content type: Research article Published on:

  23. Potato virus Y (PVY) is a major pathogen that causes substantial economic losses in worldwide potato production. Different potato cultivars differ in resistance to PVY, from severe sus...

    Authors: Tjaša Stare, Živa Ramšak, Andrej Blejec, Katja Stare, Neža Turnšek, Wolfram Weckwerth, Stefanie Wienkoop, Dominik Vodnik and Kristina Gruden
    Citation: BMC Genomics 2015 16:716
    Content type: Research article Published on:

    The Erratum to this article has been published in BMC Genomics 2017 18:226

  24. T zone lymphoma (TZL), a histologic variant of peripheral T cell lymphoma, represents about 12% of all canine lymphomas. Golden Retrievers appear predisposed, representing over 40% of TZL cases. Prior research...

    Authors: Julia D. Labadie, Ingegerd Elvers, Heather Spencer Feigelson, Sheryl Magzamen, Janna Yoshimoto, Jeremy Dossey, Robert Burnett and Anne C. Avery
    Citation: BMC Genomics 2020 21:464
    Content type: Research article Published on:

  25. Out-of-frame stop codons (OSCs) occur naturally in coding sequences of all organisms, providing a mechanism of early termination of translation in incorrect reading frame so that the metabolic cost associated ...

    Authors: Herman Tse, James J Cai, Hoi-Wah Tsoi, Esther PT Lam and Kwok-Yung Yuen
    Citation: BMC Genomics 2010 11:491
    Content type: Research article Published on:

  27. Metal sulfide mineral dissolution during bioleaching and acid mine drainage (AMD) formation creates an environment that is inhospitable to most life. Despite dominance by a small number of bacteria, AMD microb...

    Authors: Alexis P Yelton, Luis R Comolli, Nicholas B Justice, Cindy Castelle, Vincent J Denef, Brian C Thomas and Jillian F Banfield
    Citation: BMC Genomics 2013 14:485
    Content type: Research article Published on:

  28. Bacterial infections comprise a global health challenge as the incidences of antibiotic resistance increase. Pathogenic potential of bacteria has been shown to be context dependent, varying in response to envi...

    Authors: Maksim Shestov, Santiago Ontañón and Aydin Tozeren
    Citation: BMC Genomics 2015 16:773
    Content type: Research article Published on:

  29. The anaerobic spirochaete Brachyspira pilosicoli causes enteric disease in avian, porcine and human hosts, amongst others. To date, the only available genome sequence of B. pilosicoli is that of strain 95/1000, a...

    Authors: Luke J Mappley, Michael L Black, Manal AbuOun, Alistair C Darby, Martin J Woodward, Julian Parkhill, A Keith Turner, Matthew I Bellgard, Tom La, Nyree D Phillips, Roberto M La Ragione and David J Hampson
    Citation: BMC Genomics 2012 13:454
    Content type: Research article Published on:

  30. Theaceae, comprising 300 + species, holds significance in biodiversity, economics, and culture, notably including the globally consumed tea plant. Stewartia gemmata, a species of the earliest diverging tribe Stew...

    Authors: Daliang Liu, Zhihan Zhang, Yanlin Hao, Mengge Li, Houlin Yu, Xingruo Zhang, Haoyang Mi, Lin Cheng and Yiyong Zhao
    Citation: BMC Genomics 2024 25:114
    Content type: Research Published on:

  31. Non-coding small RNAs play critical roles in various cellular processes in a wide spectrum of eukaryotic organisms. Their responses to abiotic stress have become a popular topic of economic and scientific impo...

    Authors: Lu Wang, Xiang Yu, Han Wang, Yi-Zhen Lu, Marjo de Ruiter, Marcel Prins and Yu-Ke He
    Citation: BMC Genomics 2011 12:289
    Content type: Research article Published on:

  32. Geobacter species are δ-Proteobacteria and are often the predominant species in a variety of sedimentary environments where Fe(III) reduction is important. Their ability to remediate contaminated environments and...

    Authors: Hoa T Tran, Julia Krushkal, Frances M Antommattei, Derek R Lovley and Robert M Weis
    Citation: BMC Genomics 2008 9:471
    Content type: Research article Published on:

  33. Cranberries (Vaccinium macrocarpon Ait.), renowned for their excellent health benefits, are an important berry crop. Here, we performed transcriptome sequencing of one cranberry cultivar, from fruits at two diffe...

    Authors: Haiyue Sun, Yushan Liu, Yuzhuo Gai, Jinman Geng, Li Chen, Hongdi Liu, Limin Kang, Youwen Tian and Yadong Li
    Citation: BMC Genomics 2015 16:652
    Content type: Research article Published on:

  34. Recent studies have demonstrated an unexpected complexity of transcription in eukaryotes. The majority of the genome is transcribed and only a little fraction of these transcripts is annotated as protein codin...

    Authors: Claudia Calabrese, Marina Mangiulli, Caterina Manzari, Anna Maria Paluscio, Mariano Francesco Caratozzolo, Flaviana Marzano, Ivana Kurelac, Anna Maria D’Erchia, Domenica D’Elia, Flavio Licciulli, Sabino Liuni, Ernesto Picardi, Marcella Attimonelli, Giuseppe Gasparre, Anna Maria Porcelli, Graziano Pesole…
    Citation: BMC Genomics 2013 14:855
    Content type: Methodology article Published on:

  36. Monoallelic expression of autosomal genes has been implicated in human psychiatric disorders. However, there is a paucity of allelic expression studies in human brain cells at the single cell and genome wide l...

    Authors: Dejian Zhao, Mingyan Lin, Erika Pedrosa, Herbert M. Lachman and Deyou Zheng
    Citation: BMC Genomics 2017 18:860
    Content type: Research article Published on:

  37. COG0523 proteins are, like the nickel chaperones of the UreG family, part of the G3E family of GTPases linking them to metallocenter biosynthesis. Even though the first COG0523-encoding gene, cobW, was identified...

    Authors: Crysten E Haas, Dmitry A Rodionov, Janette Kropat, Davin Malasarn, Sabeeha S Merchant and Valérie de Crécy-Lagard
    Citation: BMC Genomics 2009 10:470
    Content type: Research article Published on:

  39. A previous laboratory study involving wild type, mutant and devR/dosR complemented strains of Mycobacterium tuberculosis reported the attenuation phenotype of complemented strain, Comp1. This phenotype was intrig...

    Authors: Shyamasree De Majumdar, Kriti Sikri, Payel Ghosh, Neetika Jaisinghani, Malobi Nandi, Sheetal Gandotra, Shekhar Mande and Jaya Sivaswami Tyagi
    Citation: BMC Genomics 2019 20:129
    Content type: Research article Published on:

  40. KNOXs, a type of homeobox genes that encode atypical homeobox proteins, play an essential role in the regulation of growth and development, hormonal response, and abiotic stress in plants. However, the KNOX gene ...

    Authors: Li-Cong Jia, Zi-Tong Yang, Li-Li Shang, Shao-Zhen He, Huan Zhang, Xu Li and Guo-Sheng Xin
    Citation: BMC Genomics 2024 25:572
    Content type: Research Published on:

  41. Echinoderms are established models in experimental and developmental biology, however genomic resources are still lacking for many species. Here, we present the draft genome of Ophioderma brevispinum, an emerging...

    Authors: Vladimir Mashanov, Denis Jacob Machado, Robert Reid, Cory Brouwer, Janice Kofsky and Daniel A. Janies
    Citation: BMC Genomics 2022 23:574
    Content type: Research article Published on:

  42. Intellectual disability (ID) can be caused by non-genetic and genetic factors, the latter being responsible for more than 1700 ID-related disorders. The broad ID phenotypic and genetic heterogeneity, as well a...

    Authors: Nuno Maia, Maria João Nabais Sá, Manuel Melo-Pires, Arjan P. M. de Brouwer and Paula Jorge
    Citation: BMC Genomics 2021 22:909
    Content type: Review Published on:

  43. The number of completely sequenced plastid genomes available is growing rapidly. This array of sequences presents new opportunities to perform comparative analyses. In comparative studies, it is often useful t...

    Authors: Linda A Raubeson, Rhiannon Peery, Timothy W Chumley, Chris Dziubek, H Matthew Fourcade, Jeffrey L Boore and Robert K Jansen
    Citation: BMC Genomics 2007 8:174
    Content type: Research article Published on:

  44. Enteromyxosis caused by the intestinal myxozoan parasite Enteromyxum scophthalmi is a serious threat for turbot (Scophthalmus maximus, L.) aquaculture, causing severe catarrhal enteritis leading to a cachectic sy...

    Authors: Diego Robledo, Paolo Ronza, Peter W Harrison, Ana Paula Losada, Roberto Bermúdez, Belén G Pardo, María José Redondo, Ariadna Sitjà-Bobadilla, María Isabel Quiroga and Paulino Martínez
    Citation: BMC Genomics 2014 15:1149
    Content type: Research article Published on:

  45. Alternative polyadenylation sites within a gene can lead to alternative transcript variants. Although bioinformatic analysis has been conducted to detect polyadenylation sites using nucleic acid sequences (EST...

    Authors: Pingzhang Wang, Peng Yu, Peng Gao, Taiping Shi and Dalong Ma
    Citation: BMC Genomics 2009 10:518
    Content type: Research article Published on:

  46. The green mud crab (Scylla paramamosain) is the most prevalent crustacean on the southeast coast of China. The molecular regulatory mechanism of sex determination and gonadal differentiation in this species has r...

    Authors: Jie Gao, Xiaowei Wang, Zhihua Zou, Xiwei Jia, Yilei Wang and Ziping Zhang
    Citation: BMC Genomics 2014 15:585
    Content type: Research article Published on:

  47. MicroRNAs (miRNAs) are expressed by a wide range of eukaryotic organisms, and function in diverse biological processes. Numerous miRNAs have been identified in Bombyx mori, but the temporal expression profiles of...

    Authors: Shiping Liu, Liang Zhang, Qibin Li, Ping Zhao, Jun Duan, Daojun Cheng, Zhonghuai Xiang and Qingyou Xia
    Citation: BMC Genomics 2009 10:455
    Content type: Research article Published on:

    The Retraction Note to this article has been published in BMC Genomics 2011 12:284

  48. Transthyretin (TTR) amyloidosis is a hereditary disease with a complex genotype-phenotype correlation. We conducted a literature survey to define the clinical landscape of TTR amyloidosis across populations wo...

    Authors: Andrea Iorio, Flavio De Angelis, Marco Di Girolamo, Marco Luigetti, Luca G. Pradotto, Anna Mazzeo, Sabrina Frusconi, Filomena My, Dario Manfellotto, Maria Fuciarelli and Renato Polimanti
    Citation: BMC Genomics 2017 18:254
    Content type: Research article Published on:

  49. Subolesin is an evolutionary conserved protein that was discovered recently in Ixodes scapularis as a tick protective antigen and has a role in tick blood digestion, reproduction and development. In other organis...

    Authors: José de la Fuente, Christine Maritz-Olivier, Victoria Naranjo, Patricia Ayoubi, Ard M Nijhof, Consuelo Almazán, Mario Canales, José M Pérez de la Lastra, Ruth C Galindo, Edmour F Blouin, Christian Gortazar, Frans Jongejan and Katherine M Kocan
    Citation: BMC Genomics 2008 9:372
    Content type: Research article Published on:

  50. The horn fly, Haematobia irritans (Linnaeus, 1758) (Diptera: Muscidae) is one of the most important ectoparasites of pastured cattle. Horn flies infestations reduce cattle weight gain and milk production. Additio...

    Authors: Lorena Torres, Consuelo Almazán, Nieves Ayllón, Ruth C Galindo, Rodrigo Rosario-Cruz, Héctor Quiroz-Romero and José de la Fuente
    Citation: BMC Genomics 2011 12:105
    Content type: Research article Published on:

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