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  1. Domesticated safflower (Carthamus tinctorius L.) is a widely cultivated edible oil crop. However, despite its economic importance, the genetic basis underlying key traits such as oil content, resistance to biotic...

    Authors: Yuanyuan Dong, Xiaojie Wang, Naveed Ahmad, Yepeng Sun, Yuanxin Wang, Xiuming Liu, Na Yao, Yang Jing, Linna Du, Xiaowei Li, Nan Wang, Weican Liu, Fawei Wang, Xiaokun Li and Haiyan Li
    Citation: BMC Genomics 2024 25:510
  2. The increase in temperatures due to the current climate change dramatically affects crop cultivation, resulting in yield losses and altered fruit quality. Tomato is one of the most extensively grown and consum...

    Authors: Salvatore Graci, Riccardo Aiese Cigliano and Amalia Barone
    Citation: BMC Genomics 2024 25:509
  3. Conducting genome-wide association studies (GWAS) for reproductive traits in Hanwoo cattle, including age at first calving (AFC), calving interval (CI), gestation length (GL), and number of artificial insemina...

    Authors: Md Azizul Haque, Yun-Mi Lee, Jae-Jung Ha, Shil Jin, Byoungho Park, Nam-Young Kim, Jeong-Il Won and Jong-Joo Kim
    Citation: BMC Genomics 2024 25:496
  4. Enzymatic degradation mediated by beta-lactamases constitutes one of the primary mechanisms of resistance to beta-lactam antibiotics in gram-negative bacteria. This enzyme family comprises four molecular class...

    Authors: Joyce de Souza, Alexandre Zanatta Vieira, Hellen Geremias dos Santos and Helisson Faoro
    Citation: BMC Genomics 2024 25:508
  5. Alpha-papillomavirus 9 (α-9) is a member of the human papillomavirus (HPV) α genus, causing 75% invasive cervical cancers worldwide. The purpose of this study was to provide data for effective treatment of HPV...

    Authors: Haobo Yuan, Ziyi Yan, Jun Gan, Xinghong Di, Yi Qiu and Huihui Xu
    Citation: BMC Genomics 2024 25:507
  6. Long non-coding RNAs (lncRNAs) are crucial modulators of post-transcriptional gene expression regulation, cell fate determination, and disease development. However, lncRNA functions during short-term heat stre...

    Authors: Bing Zhang, Chaoying Zhang, Jiangchao Zhang, Surong Lu, Huiting Zhao, Yusuo Jiang and Weihua Ma
    Citation: BMC Genomics 2024 25:506
  7. Skeletal muscle development plays a crucial role in yield and quality of pork; however, this process is influenced by various factors. In this study, we employed whole-genome bisulfite sequencing (WGBS) and tr...

    Authors: Shi-yin Li, Yun-zhou Wang, Wei Chen, Li-xia Ma, Jian-min Zhang, Yu-lun Zhang and Yong-qing Zeng
    Citation: BMC Genomics 2024 25:504
  8. While numerous allergy-related biomarkers and targeted treatment strategies have been developed and employed, there are still signifcant limitations and challenges in the early diagnosis and targeted treatment...

    Authors: Ziqin Cao, Qiangxiang Li, Yajia Li and Jianhuang Wu
    Citation: BMC Genomics 2024 25:503
  9. Fusarium zanthoxyli is a destructive pathogen causing stem canker in prickly ash, an ecologically and economically important forest tree. However, the genome lack of F. zanthoxyli has hindered research on its int...

    Authors: Zhao Ruan, Jiahui Jiao, Junchi Zhao, Jiaxue Liu, Chaoqiong Liang, Xia Yang, Yan Sun, Guanghui Tang and Peiqin Li
    Citation: BMC Genomics 2024 25:502
  10. The peri-implantation period is a critical time during pregnancy that mostly defines the overall litter size. Most authors agree that the highest percentage of embryo mortality occurs during this time. Despite...

    Authors: Kamil Dobrzyn, Marta Kiezun, Grzegorz Kopij, Barbara Zarzecka, Marlena Gudelska, Katarzyna Kisielewska, Ewa Zaobidna, Karol G. Makowczenko, Cecilia Dall’Aglio, Tadeusz Kamiński and Nina Smolińska
    Citation: BMC Genomics 2024 25:501
  11. The ricefield eel Monopterus albus undergoes a natural sex change from female to male during its life cycle, and previous studies have shown the potential mechanisms of this transition at the transcriptional and ...

    Authors: Zhi He, Feng Xiao, Deying Yang, Faqiang Deng, Wenxiang Ding, Zhide He, Siqi Wang, Qiqi Chen, Haochen Wang, Mingqiang Chen, Kuo Gao, Jinxing Xiong, Ziting Tang, Mingwang Zhang and Taiming Yan
    Citation: BMC Genomics 2024 25:500
  12. The hair follicle development process is regulated by sophisticated genes and signaling networks, and the hair grows from the hair follicle. The Tianzhu white yak population exhibits differences in hair length...

    Authors: Xuelan Zhou, Xiaoyun Wu, Chengfang Pei, Meilan He, Min Chu, Xian Guo, Chunnian Liang, Pengjia Bao and Ping Yan
    Citation: BMC Genomics 2024 25:498
  13. Alfalfa (Medicago sativa L.) is the most cultivated forage legume around the world. Under a variety of growing conditions, forage yield in alfalfa is stymied by biotic and abiotic stresses including heat, salt, d...

    Authors: Atit Parajuli, Bhabesh Borphukan, Karen A. Sanguinet and Zhiwu Zhang
    Citation: BMC Genomics 2024 25:497
  14. Bacteria of the genera Xylanibacter and Segatella are among the most dominant groups in the rumen microbiota. They are characterized by the ability to utilize different hemicelluloses and pectin of plant cell-wal...

    Authors: Urška Murovec and Tomaž Accetto
    Citation: BMC Genomics 2024 25:495
  15. Mammary gland development is a critical process in mammals, crucial for their reproductive success and offspring nourishment. However, the functional roles of key candidate genes associated with teat number, i...

    Authors: Xiaoli Guo, Chengcheng Zhao, Ruifei Yang, Yuzhe Wang and Xiaoxiang Hu
    Citation: BMC Genomics 2024 25:494
  16. Insects rely on sophisticated sensitive chemosensory systems to sense their complex chemical environment. This sensory process involves a combination of odorant receptors (ORs), gustatory receptors (GRs) and i...

    Authors: Ruipeng Chen, Junjie Yan, Jacob D. Wickham and Yulin Gao
    Citation: BMC Genomics 2024 25:493
  17. Rapeseed (Brassica napus L.), accounts for nearly 16% of vegetable oil, is the world’s second produced oilseed. However, pod shattering has caused significant yield loses in rapeseed production, particularly duri...

    Authors: Fugui Zhang, Nian Liu, Tianhua Chen, Hong Xu, Rui Li, Liyan Wang, Shuo Zhou, Qing’ao Cai, Xinzhe Hou, Ling Wang, Xingzhi Qian, Zonghe Zhu and Kejin Zhou
    Citation: BMC Genomics 2024 25:492
  18. Ruptured atherosclerotic plaques often precipitate severe ischemic events, such as stroke and myocardial infarction. Unraveling the intricate molecular mechanisms governing vascular smooth muscle cell (VSMC) b...

    Authors: Zhanli Peng, Qinghui Kan, Kangjie Wang, Tang Deng, Shenming Wang, Ridong Wu and Chen Yao
    Citation: BMC Genomics 2024 25:490
  19. The cellular origin of hypopharyngeal diseases is crucial for further diagnosis and treatment, and the microenvironment in tissues may also be associated with specific cell types at the same time. Normal adjac...

    Authors: Rui Guan, Ce Li, Fangmeng Gu, Wenming Li, Dongmin Wei, Shengda Cao, Fen Chang and Dapeng Lei
    Citation: BMC Genomics 2024 25:489
  20. Phosphorus plays a key role in plant adaptation to adversity and plays a positive role in the yield and quality formation of apples. Genes of the SPX domain-containing family are widely involved in the regulation...

    Authors: Zenghui Wang, Xiaowen Zhang, Xuemei Yang, Haixia Tang, Lijuan Feng, Yanlei Yin and Jialin Li
    Citation: BMC Genomics 2024 25:488
  21. The identification of low-frequency haplotypes, never observed in homozygous state in a population, is considered informative on the presence of potentially harmful alleles (candidate alleles), putatively invo...

    Authors: Katherine D. Arias, Iván Fernández, Juan Pablo Gutiérrez, Isabel Álvarez and Félix Goyache
    Citation: BMC Genomics 2024 25:487
  22. Amino acids are the basic components of protein and an important index to evaluate meat quality. With the rapid development of genomics, candidate regions and genes affecting amino acid content in livestock an...

    Authors: Rui Wang, Yinjuan Lu, Jingjing Qi, Yang Xi, Zhenyang Shen, Grace Twumasi, Lili Bai, Jiwei Hu, Jiwen Wang, Liang Li and Hehe Liu
    Citation: BMC Genomics 2024 25:486
  23. Indigenous chickens were developed through a combination of natural and artificial selection; essentially, changes in genomes led to the formation of these modern breeds via admixture events. However, their co...

    Authors: Xiaodong Tan, Lu Liu, Jie Dong, Minjie Huang, Jiawen Zhang, Qinghai Li, Huanhuan Wang, Lijuan Bai, Ming Cui, Zhenzhen Zhou, De Wu, Yun Xiang, Weifen Li and Deqian Wang
    Citation: BMC Genomics 2024 25:485
  24. Childhood glaucoma (CG) encompasses a heterogeneous group of genetic eye disorders that is responsible for approximately 5% of childhood blindness worldwide. Understanding the molecular aetiology is key to imp...

    Authors: Omayma Al-Saei, Samantha Malka, Nicholas Owen, Elbay Aliyev, Fazulur Rehaman Vempalli, Paulina Ocieczek, Bashayer Al-Khathlan, Khalid Fakhro and Mariya Moosajee
    Citation: BMC Genomics 2024 25:484
  25. The severity of COVID-19 is influenced by various factors including the presence of respiratory diseases. Studies have indicated a potential relationship between asthma and COVID-19 severity.

    Authors: Omayma Amri, Anne-Marie Madore, Anne-Marie Boucher-Lafleur and Catherine Laprise
    Citation: BMC Genomics 2024 25:482
  26. There is no consensus as to the origin of the domestic yak (Bos grunniens). Previous studies on yak mitochondria mainly focused on mitochondrial displacement loop (D-loop), a region with low phylogenetic resoluti...

    Authors: Xingdong Wang, Jie Pei, Lin Xiong, Pengjia Bao, Min Chu, Xiaoming Ma, Yongfu La, Chunnian Liang, Ping Yan and Xian Guo
    Citation: BMC Genomics 2024 25:481
  27. Hu sheep (HS), a breed of sheep carrying the FecB mutation gene, is known for its “year-round estrus and multiple births” and is an ideal model for studying the high fecundity mechanisms of livestock. Through ana...

    Authors: Tao Zhong, Dunying Hou, Qianjun Zhao, Siyuan Zhan, Linjie Wang, Li Li, Hongping Zhang, Wei Zhao, Shizhong Yang and Lili Niu
    Citation: BMC Genomics 2024 25:480
  28. In the context of early sowing of maize as a promising adaptation strategy that could significantly reduce the negative effects of climate change, an in-depth understanding of mechanisms underlying plant respo...

    Authors: Manja Božić, Dragana Ignjatović Micić, Nenad Delić and Ana Nikolić
    Citation: BMC Genomics 2024 25:479
  29. Tuberculosis (TB) represents a major global health challenge. Drug resistance in Mycobacterium tuberculosis (MTB) poses a substantial obstacle to effective TB treatment. Identifying genomic mutations in MTB isola...

    Authors: Weiye Qian, Nan Ma, Xi Zeng, Mai Shi, Mingqiang Wang, Zhiyuan Yang and Stephen Kwok-Wing Tsui
    Citation: BMC Genomics 2024 25:478
  30. Since domestication, both evolutionary forces and human selection have played crucial roles in producing adaptive and economic traits, resulting in animal breeds that have been selected for specific climates a...

    Authors: Chenxi Zhang, Hojjat Asadollahpour Nanaei, Niloufar Jafarpour Negari, Mahmoud Amiri Roudbar, Zeinab Amiri Ghanatsaman, Zhannur Niyazbekova and Xiaojun Yang
    Citation: BMC Genomics 2024 25:477
  31. Heterosis has successfully enhanced maize productivity and quality. Although significant progress has been made in delineating the genetic basis of heterosis, the molecular mechanisms underlying its genetic co...

    Authors: Weimin Zhan, Lianhua Cui, Shuling Yang, Kangni Zhang, Yanpei Zhang and Jianping Yang
    Citation: BMC Genomics 2024 25:476
  32. Single nucleotide polymorphism (SNP) markers play significant roles in accelerating breeding and basic crop research. Several soybean SNP panels have been developed. However, there is still a lack of SNP panel...

    Authors: Yongchao Niu, Wai-Shing Yung, Ching-Ching Sze, Fuk-Ling Wong, Man-Wah Li, Gyuhwa Chung and Hon-Ming Lam
    Citation: BMC Genomics 2024 25:475
  33. Flowering time has an important effect on regional adaptation and yields for crops. The tyrosine kinase-like (TKL) gene family is widely existed and participates in many biological processes in plants. Further...

    Authors: Peisen S. Su, Jingyu Li, Dongtian Zang, Zhiyu Wang, Yangyang Wu, Shatong Chi, Fanting Sun, Yufei Niu, Xuewen Hua, Jun Yan and Wenyang Ge
    Citation: BMC Genomics 2024 25:474
  34. Herein, we report results from a genome-wide study conducted to identify protein quantitative trait loci (pQTL) for circulating angiogenic and inflammatory protein markers in patients with metastatic colorecta...

    Authors: Julia C.F. Quintanilha, Alexander B. Sibley, Yingmiao Liu, Donna Niedzwiecki, Susan Halabi, Layne Rogers, Bert O’Neil, Hedy Kindler, William Kelly, Alan Venook, Howard L. McLeod, Mark J. Ratain, Andrew B. Nixon, Federico Innocenti and Kouros Owzar
    Citation: BMC Genomics 2024 25:473
  35. Caddisfly larvae produce silk containing heavy and light fibroins, similar to the silk of Lepidoptera, for the construction of underwater structures. We analyzed the silk of Limnephilus lunatus belonging to the c...

    Authors: Lenka Rouhova, Martina Zurovcova, Miluse Hradilova, Michal Sery, Hana Sehadova and Michal Zurovec
    Citation: BMC Genomics 2024 25:472
  36. Gut microbiota(GM) have been proven associated with lots of gastrointestinal diseases, but its causal relationship with Gastroesophageal reflux disease(GERD) and Barrett’s esophagus(BE) hasn’t been explored. W...

    Authors: Yuan Liu, Jiali Yu, Yuxiao Yang, Bingyu Han, Qiao Wang and Shiyu Du
    Citation: BMC Genomics 2024 25:471
  37. The absence of heterozygosity (AOH) is a kind of genomic change characterized by a long contiguous region of homozygous alleles in a chromosome, which may cause human genetic disorders. However, no method of l...

    Authors: Fei Tang, Zhonghua Wang, Yan Sun, Linlin Fan, Yun Yang, Xueqin Guo, Yaoshen Wang, Saiying Yan, Zhihong Qiao, Yun Li, Ting Jiang, Xiaoli Wang, Jianfen Man, Lina Wang, Shunyao Wang, Huanhuan Peng…
    Citation: BMC Genomics 2024 25:470
  38. Carotenoid cleavage oxygenases (CCOs) enzymes play a vital role in plant growth and development through the synthesis of apocarotenoids and their derivative. These chemicals are necessary for flower and fruit col...

    Authors: Arsalan Ahmad, Adnan Sami, Umer Habib, Muhammad Ali, Muhammad Shafiq, Muhammad Zeshan Haider, Shahbaz Ahmad, Baber Ali, Steve Harakeh, Rania M. Makki, Talha Chaudhary and Fathia A. Soudy
    Citation: BMC Genomics 2024 25:469
  39. Plant-specific TIFY proteins are widely found in terrestrial plants and play important roles in plant adversity responses. Although the genome of loquat at the chromosome level has been published, studies on t...

    Authors: Xulin Li, Ke Wen, Ling Zhu, Chaoying Chen, Tuo Yin, Xiuyao Yang, Ke Zhao, Yinqiang Zi, Huiyun Zhang, Xinping Luo and Hanyao Zhang
    Citation: BMC Genomics 2024 25:468
  40. Heat stress (HS) poses significant threats to the sustainability of livestock production. Genetically improving heat tolerance could enhance animal welfare and minimize production losses during HS events. Meas...

    Authors: Letícia Fernanda de Oliveira, Renata Veroneze, Katiene Régia Silva Sousa, Henrique A. Mulim, André Campelo Araujo, Yijian Huang, Jay S. Johnson and Luiz F. Brito
    Citation: BMC Genomics 2024 25:467
  41. The early 2 factor (E2F) family is characterized as a kind of transcription factor that plays an important role in cell division, DNA damage repair, and cell size regulation. However, its stress response has n...

    Authors: Yang Cao, Kexin Wang, Fengzhong Lu, Qi Li, Qingqing Yang, Bingliang Liu, Hayderbinkhalid Muhammad, Yingge Wang, Fengling Fu, Wanchen Li and Haoqiang Yu
    Citation: BMC Genomics 2024 25:465
  42. Detecting epistatic interactions (EIs) involves the exploration of associations among single nucleotide polymorphisms (SNPs) and complex diseases, which is an important task in genome-wide association studies....

    Authors: De-yu Tang, Yi-jun Mao, Jie Zhao, Jin Yang, Shi-yin Li, Fu-xiang Ren and Junxi Zheng
    Citation: BMC Genomics 2024 25:462

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