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  1. Nitrate is a primary nitrogen source for plant growth, and previous studies have indicated a correlation between nitrogen and browning. Nitrate transporters (NRTs) are crucial in nitrate allocation. Here, we util...

    Authors: Jin Feng, Can Zhu, Jiaqi Cao, Chen Liu, Jiaqi Zhang, Fuliang Cao and Xiaohong Zhou
    Citation: BMC Genomics 2023 24:633
  2. Background Puccinia arachidis fungus causes rust disease in the peanut plants (Arachis hypogaea L.), which leads to high yield loss. Metabolomic profiling of Arachis hypogaea was performed to identify the pathoge...

    Authors: Visha Rathod, Khyati Rathod, Rukam S. Tomar, Ritisha Tatamiya, Rasmieh Hamid, Feba Jacob and Nasreen Shakil Munshi
    Citation: BMC Genomics 2023 24:630
  3. Auxin is an important hormone in plants and the PIN-FORMED (PIN) genes are essential to auxin distribution in growth and developmental processes of plants. Peanut is an influential cash crop, but research into PI...

    Authors: Jianxin Bian, Yuanyuan Cui, Jihua Li, Yu Guan, Shuhua Tian and Xiaoqin Liu
    Citation: BMC Genomics 2023 24:629
  4. The survival and fertility of heifers are critical factors for the success of dairy farms. The mortality of heifers poses a significant challenge to the management and profitability of the dairy industry. In d...

    Authors: Yahui Gao, Alexis Marceau, Victoria Iqbal, Jose Antonio Torres-Vázquez, Mahesh Neupane, Jicai Jiang, George E. Liu and Li Ma
    Citation: BMC Genomics 2023 24:628
  5. Phytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disea...

    Authors: Gang Lei, Kun-Hua Zhou, Xue-Jun Chen, Yue-Qin Huang, Xin-Jie Yuan, Ge-Ge Li, Yuan-Yuan Xie and Rong Fang
    Citation: BMC Genomics 2023 24:626
  6. Anaerobic parasitic ciliates are a specialized group of ciliates that are adapted to anoxic and oxygen-depleted habitats. Among them, Balantidium polyvacuolum, which inhabits the hindgut of Xenocyprinae fishes, h...

    Authors: Xia-lian Bu, Wei-shan Zhao, Zhong-yang Li, Hong-wei Ma, Yu-shun Chen, Wen-xiang Li, Hong Zou, Ming Li and Gui-tang Wang
    Citation: BMC Genomics 2023 24:624
  7. Establishment of DNA methylation (DNAme) patterns is essential for balanced multi-lineage cellular differentiation, but exactly how these patterns drive cellular phenotypes is unclear. While > 80% of CpG sites...

    Authors: Timothy J. Scott, Tyler J. Hansen, Evonne McArthur and Emily Hodges
    Citation: BMC Genomics 2023 24:623
  8. Exploring Brevibacterium strains from various ecosystems may lead to the discovery of new antibiotic-producing strains. Brevibacterium sp. H-BE7, a strain isolated from marine sediments from Northern Patagonia, C...

    Authors: Andrés Cumsille, Néstor Serna-Cardona, Valentina González, Fernanda Claverías, Agustina Undabarrena, Vania Molina, Francisco Salvà-Serra, Edward R.B. Moore and Beatriz Cámara
    Citation: BMC Genomics 2023 24:622
  9. Puberty marks the end of childhood and achieve sexual maturation and fertility. The role of hypothalamic proteins in regulating puberty onset is unclear. We performed a comprehensive differential proteomics an...

    Authors: Jing Ye, Xu Yan, Wei Zhang, Juntai Lu, Shuangshuang Xu, Xiaoqian Li, Ping Qin, Xinbao Gong, Ya Liu, Yinghui Ling, Yunsheng Li, Yunhai Zhang and Fugui Fang
    Citation: BMC Genomics 2023 24:621
  10. Plants respond to stress through highly tuned regulatory networks. While prior works identified master regulators of iron deficiency responses in A. thaliana from whole-root data, identifying regulators that a...

    Authors: Selene R. Schmittling, DurreShahwar Muhammad, Samiul Haque, Terri A. Long and Cranos M. Williams
    Citation: BMC Genomics 2023 24:620
  11. To explore the potential network markers and related signaling pathways of human B cells infected by COVID-19, we performed standardized integration and analysis of single-cell sequencing data to construct con...

    Authors: Ying Li, Liqin Han, Peiluan Li, Jing Ge, Yun Xue and Luonan Chen
    Citation: BMC Genomics 2023 24:619
  12. Extravillous trophoblast cell (EVT) differentiation and its communication with maternal decidua especially the leading immune cell type natural killer (NK) cell are critical events for placentation. However, a...

    Authors: Bai-Mei Zhuang, Dan-Dan Cao, Tian-Xi Li, Xiao-Feng Liu, Min-Min Lyu, Si-Dong Wang, Xin-Yuan Cui, Li Wang, Xiao-Lin Chen, Xiao-Li Lin, Cheuk-Lun Lee, Philip C.N. Chiu, William S.B. Yeung and Yuan-Qing Yao
    Citation: BMC Genomics 2023 24:618
  13. Oculomotor nerve palsy (ONP) is a neuroparalytic disorder resulting in dysfunction of innervating extraocular muscles (EOMs), of which the pathological characteristics remain underexplored.

    Authors: Mingsu Shi, Yanxi Fang, Yu Liang, Yuxiang Hu, Jiaqiu Huang, Weiyi Xia, Hewei Bian, Qiao Zhuo, Lianqun Wu and Chen Zhao
    Citation: BMC Genomics 2023 24:617
  14. Elucidating genome-wide structural variants including copy number variations (CNVs) have gained increased significance in recent times owing to their contribution to genetic diversity and association with impo...

    Authors: Sheikh Firdous Ahmad, Celus Chandrababu Shailaja, Sakshi Vaishnav, Amit Kumar, Gyanendra Kumar Gaur, Sarath Chandra Janga, Syed Mudasir Ahmad, Waseem Akram Malla and Triveni Dutt
    Citation: BMC Genomics 2023 24:616
  15. Understanding the microflora inhabiting the reproductive tract is important for a better understanding of female physiology and reproductive health. The endometrial fluid from mice in three reproductive stages...

    Authors: Sisi Pu, Meng Wang, Jinglei Wang, Qian Zhang, Xin Ma, Rui Wang, Sijiu Yu, Libin Wang and Yangyang Pan
    Citation: BMC Genomics 2023 24:615
  16. Chromosomal compartmentalization plays a critical role in maintaining proper transcriptional programs in cell differentiation and oncogenesis. However, currently the prevalent method for comparative analysis o...

    Authors: Yan Kai, Nan Liu, Stuart H. Orkin and Guo-Cheng Yuan
    Citation: BMC Genomics 2023 24:614
  17. The domestic dog, Canis lupus familiaris, is a companion animal for humans as well as an animal model in cancer research due to similar spontaneous occurrence of cancers as humans. Despite the social and biologic...

    Authors: In Seok Yang, Insu Jang, Jin Ok Yang, Jinhyuk Choi, Min-Seo Kim, Ka-Kyung Kim, Byung-Joon Seung, Jae-Ho Cheong, Jung-Hyang Sur, Hojung Nam, Byungwook Lee, Junho Kim and Sangwoo Kim
    Citation: BMC Genomics 2023 24:613
  18. The hepatopancreas of crustaceans serves as a significant organ for both the synthesis and secretion of digestive enzymes, as well as energy storage. In the event of food shortage, the hepatopancreas can provi...

    Authors: Hongli Liu, Yang Feng, Ma Yang, Ya Huang, Minghao Li, Yi Geng, Ping Ouyang, Defang Chen, Shiyong Yang, Lizi Yin, Liangyu Li and Xiaoli Huang
    Citation: BMC Genomics 2023 24:612
  19. Uniparental-inherited haploid genetic marker of Y­chromosome single nucleotide polymorphisms (Y-SNP) have the power to provide a deep understanding of the human evolutionary past, forensic pedigree, and bio-ge...

    Authors: Guang-Bin Zhao, Lei Miao, Mengge Wang, Jia-Hui Yuan, Lan-Hai Wei, Yao-Sen Feng, Jie Zhao, Ke-Lai Kang, Chi Zhang, An-Quan Ji, Guanglin He and Le Wang
    Citation: BMC Genomics 2023 24:611
  20. Vancomycin-resistant enterococci (VRE) are among the most common causative pathogens for nosocomial infections worldwide. Moreover, strains of VRE have been isolated from several domestic livestock in Egypt.

    Authors: Khaled A. Abd El-Razik, Eman S. Ibrahim, Amany A. Arafa, Riham H. Hedia, Abdelgayed M. Younes and Mahmoud H. Hasanain
    Citation: BMC Genomics 2023 24:610
  21. Since DNA information was first used in taxonomy, barcode sequences such as the internal transcribed spacer (ITS) region have greatly aided fungal identification; however, a barcode sequence alone is often ins...

    Authors: Yuuki Kobayashi, Ayane Kayamori, Keita Aoki, Yuh Shiwa, Minenosuke Matsutani, Nobuyuki Fujita, Takashi Sugita, Wataru Iwasaki, Naoto Tanaka and Masako Takashima
    Citation: BMC Genomics 2023 24:609

    The Correction to this article has been published in BMC Genomics 2023 24:653

  22. The presence of Aggregated Lymphoid Nodules Area (ALNA) is a notable anatomical characteristic observed in the abomasum of Bactrian camels. This area is comprised of two separate regions, namely the Reticular ...

    Authors: Yujiao Cheng, Yan Ren, Wenhui Wang and Wangdong Zhang
    Citation: BMC Genomics 2023 24:608
  23. Schisandra sphenanthera is an extremely important medicinal plant, and its main medicinal component is bioactive lignans. The S. sphenanthera fruit is preferred by the majority of consumers, and the root, stem, a...

    Authors: Boshi Sun, Peng Wang, Meng Guan, Entong Jia, Qian Li, Jun Li, Ziyun Zhou and Pengda Ma
    Citation: BMC Genomics 2023 24:607
  24. Plasmodium vivax is the second most important cause of human malaria worldwide, and accounts for the majority of malaria cases in South America. A high-quality reference genome exists for Papua Indonesia (PvP01) ...

    Authors: Katlijn De Meulenaere, Bart Cuypers, Dionicia Gamboa, Kris Laukens and Anna Rosanas-Urgell
    Citation: BMC Genomics 2023 24:606
  25. Genome-wide association studies (GWAS) have identified host genetic variants associated with paratuberculosis (PTB) susceptibility. Most of the GWAS-identified SNPs are in non-coding regions. Connecting these ...

    Authors: Gerard Badia-Bringué, Maria Canive, Nora Fernandez-Jimenez, José Luis Lavín, Rosa Casais, Cristina Blanco-Vázquez, Patricia Vázquez, Almudena Fernández, Jose Ramón Bilbao, Joseba M. Garrido, Ramón A. Juste, Oscar González-Recio and Marta Alonso-Hearn
    Citation: BMC Genomics 2023 24:605
  26. Cashmere has long been used as the raw material for wool textiles. The diameter of the cashmere fibre determines its quality and economic value. However, the regulatory role of noncoding RNAs (ncRNAs) in cashm...

    Authors: Cuiling Wu, Qin Xu, Jianying Li, Chongkai Qin, Hanikezi Tulafu, Wenna Liu, Qingwei Lu, Wenxin Zheng and Xuefeng Fu
    Citation: BMC Genomics 2023 24:604
  27. Zinc finger-homeodomain (ZHD) proteins are mostly expressed in plants and are involved in proper growth and development and minimizing biotic and abiotic stress. A recent study identified and characterized the...

    Authors: Md. Abir Ul Islam, Juthy Abedin Nupur, Muhammad Shafiq, Qurban Ali, Adnan Sami and Muhammad Adnan Shahid
    Citation: BMC Genomics 2023 24:603
  28. Ajania Poljakov, an Asteraceae family member, grows mostly in Asia’s arid and semi-desert areas and is a significant commercial and decorative plant. Nevertheless, the genus’ classification has been disputed, and...

    Authors: Jingya Yu, Yun Han, Hao Xu, Shuang Han, Xiaoping Li, Yu Niu, Shilong Chen and Faqi Zhang
    Citation: BMC Genomics 2023 24:602
  29. Deep-intronic variants that alter RNA splicing were ineffectively evaluated in the search for the cause of genetic diseases. Determination of such pathogenic variants from a vast number of deep-intronic varian...

    Authors: Ryo Kurosawa, Kei Iida, Masahiko Ajiro, Tomonari Awaya, Mamiko Yamada, Kenjiro Kosaki and Masatoshi Hagiwara
    Citation: BMC Genomics 2023 24:601
  30. MicroRNAs (miRNAs) play an important regulatory role in mammalian reproduction. Currently, most studies are primarily concentrated on ovarian miRNAs, ignoring the influence of endometrial miRNAs on the fecundi...

    Authors: Jihong Dong, Xuecheng Jiang, Nan Liu, Hegang Li, Jinshan Zhao, Jianning He and Xiaoxiao Gao
    Citation: BMC Genomics 2023 24:600
  31. MicroRNAs (miRNAs) and long non-coding RNAs (lncRNAs) are the two main types of non-coding RNAs that play crucial roles in plant growth and development. However, their specific roles in the fiber growth of ram...

    Authors: Yafen Fu, Langbo Yi, Fu Li, Jing Rao, Xiai Yang, Yanzhou Wang, Chan Liu, Touming Liu and Siyuan Zhu
    Citation: BMC Genomics 2023 24:599
  32. Conus, a highly diverse species of venomous predators, has attracted significant attention in neuroscience and new drug development due to their rich collection of neuroactive peptides called conotoxins. Recent a...

    Authors: Jian-Wei Zheng, Yang Lu, Yu-Feng Yang, Dan Huang, Da-Wei Li, Xiang Wang, Yang Gao, Wei-Dong Yang, Yuanfang Guan and Hong-Ye Li
    Citation: BMC Genomics 2023 24:598
  33. Transcription factors (TFs) exhibit heterogeneous DNA-binding specificities in individual cells and whole organisms under natural conditions, and de novo motif discovery usually provides multiple motifs, even ...

    Authors: Saeko Tahara, Takaho Tsuchiya, Hirotaka Matsumoto and Haruka Ozaki
    Citation: BMC Genomics 2023 24:597
  34. Soybean is one of the most important oil crops in the world, and its protein and fat are the primary sources of edible oil and vegetable protein. The effective components in soybean protein and fat have positi...

    Authors: Qi Zhang, Tingting Sun, Jiabao Wang, JianBo Fei, Yufu Liu, Lu Liu and Peiwu Wang
    Citation: BMC Genomics 2023 24:596
  35. Monocytes are key mediators of innate immunity to infection, undergoing profound and dynamic changes in epigenetic state and immune function which are broadly protective but may be dysregulated in disease. Her...

    Authors: Harindra E. Amarasinghe, Ping Zhang, Justin P. Whalley, Alice Allcock, Gabriele Migliorini, Andrew C. Brown, Giuseppe Scozzafava and Julian C. Knight
    Citation: BMC Genomics 2023 24:595
  36. The composition and content of fatty acids in the breast muscle are important factors influencing meat quality. In this study, we investigated the fatty acid composition and content in the breast muscle of Gus...

    Authors: Bin Zhai, Yinli Zhao, Hongtai Li, Shuaihao Li, Jinxing Gu, Hongyuan Zhang, Yanhua Zhang, Hong Li, Yadong Tian, Guoxi Li and Yongcai Wang
    Citation: BMC Genomics 2023 24:594
  37. Genome-wide association studies (GWAS) are important for the acceleration of crop improvement through knowledge of marker-trait association (MTA). This report used DArT SNP markers to successfully perform GWAS...

    Authors: Charles U. Uba, Happiness O. Oselebe, Abush A. Tesfaye and Wosene G. Abtew
    Citation: BMC Genomics 2023 24:593
  38. Antigenic stimulation through cross-linking the IgE receptor and epithelial cell-derived cytokine IL-33 are potent stimuli of mast cell (MC) activation. Moreover, IL-33 primes a variety of cell types, includin...

    Authors: Junfeng Gao, Yapeng Li, Xiaoyu Guan, Zahraa Mohammed, Gregorio Gomez, Yvonne Hui, Dianzheng Zhao, Carole A. Oskeritzian and Hua Huang
    Citation: BMC Genomics 2023 24:592
  39. Receptivity of the uterus is essential for embryo implantation and progression of mammalian pregnancy. Acquisition of receptivity involves major molecular and cellular changes in the endometrial lining of the ...

    Authors: Hon Yeung Chan, Ha M. Tran, James Breen, John E. Schjenken and Sarah A. Robertson
    Citation: BMC Genomics 2023 24:590
  40. The Q-426 strain isolated from compost samples has excellent antifungal activities against a variety of plant pathogens. However, the complete genome of Q-426 is still unclear, which limits the potential appli...

    Authors: Lulu Wang, Ruochen Fan, Haodi Ma, Yu Sun, Yangzhu Huang, Yuxin Wang, Qinfeng Guo, Xinxiu Ren, Lukai Xu, Jing Zhao, Liying Zhang, Yongbin Xu, Liming Jin, Yuesheng Dong and Chunshan Quan
    Citation: BMC Genomics 2023 24:589
  41. The fruits of Gardenia are rich in flavonoids and geniposides, which have various pharmacological effects such as antioxidant, anti-inflammatory and anticancer. In this study, we analyzed the transcriptome and...

    Authors: Jianrong Chen, Weizhuo Tang, Chunyan Li, Ding Kuang, Xiaojiang Xu, Yuan Gong, Fang Liu and Song Gao
    Citation: BMC Genomics 2023 24:588
  42. Developing high yielding varieties is a major challenge for breeders tackling the challenges of climate change in agriculture. The panicle (inflorescence) architecture of rice is one of the key components of y...

    Authors: Hélène Adam, Andrés Gutiérrez, Marie Couderc, François Sabot, Fabrice Ntakirutimana, Julien Serret, Julie Orjuela, James Tregear, Stefan Jouannic and Mathias Lorieux
    Citation: BMC Genomics 2023 24:587
  43. B-box (BBX) proteins play important roles in regulating plant growth, development, and abiotic stress responses. BBX family genes have been identified and functionally characterized in many plant species, but ...

    Authors: Xiaoming Liu, Wenying Sun, Bin Ma, Yan Song, Qingxun Guo, Lianxia Zhou, Kuishen Wu, Xinsheng Zhang and Chunyu Zhang
    Citation: BMC Genomics 2023 24:584
  44. Several phytopathogens produce small non-coding RNAs of approximately 18–30 nucleotides (nt) which post-transcriptionally regulate gene expression. Commonly called small RNAs (sRNAs), these small molecules wer...

    Authors: Roshan Regmi, Toby E. Newman, Yuphin Khentry, Lars G. Kamphuis and Mark C. Derbyshire
    Citation: BMC Genomics 2023 24:582
  45. Rapid and accurate pathogen identification is required for disease management. Compared to sequencing entire genomes, targeted sequencing may be used to direct sequencing resources to genes of interest for mic...

    Authors: Pei-Ling Yu, James C. Fulton, Owen H. Hudson, Jose C. Huguet-Tapia and Jeremy T. Brawner
    Citation: BMC Genomics 2023 24:581

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