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  1. The field of bee genomics has considerably advanced in recent years, however, the most diverse group of honey producers on the planet, the stingless bees, are still largely neglected. In fact, only eleven of t...

    Authors: Rafael Rodrigues Ferrari, Paulo Cseri Ricardo, Felipe Cordeiro Dias, Natalia de Souza Araujo, Dalliane Oliveira Soares, Qing-Song Zhou, Chao-Dong Zhu, Luiz Lehmann Coutinho, Maria Cristina Arias and Thiago Mafra Batista
    Citation: BMC Genomics 2024 25:587
  2. Anguillid eels spend their larval period as leptocephalus larvae that have a unique and specialized body form with leaf-like and transparent features, and they undergo drastic metamorphosis to juvenile glass e...

    Authors: Ryusuke Sudo, Taiga Asakura, Takashi Ishikawa, Rui Hatakeyama, Atushi Fujiwara, Komaki Inoue, Keiichi Mochida and Kazuharu Nomura
    Citation: BMC Genomics 2024 25:585
  3. The rational modelling of the relationship among drugs, targets and diseases is crucial for drug retargeting. While significant progress has been made in studying binary relationships, further research is need...

    Authors: Wenjun Li, Wanjun Ma, Mengyun Yang and Xiwei Tang
    Citation: BMC Genomics 2024 25:584
  4. The issue of male fertility is becoming increasingly common due to genetic differences inherited over generations. Gene expression and evaluation of non-coding RNA (ncRNA), crucial for sperm development, are s...

    Authors: Danial Hashemi Karoii, Hossein Azizi and Thomas Skutella
    Citation: BMC Genomics 2024 25:583
  5. Carcass traits are essential economic traits in the commercial pig industry. However, the genetic mechanism of carcass traits is still unclear. In this study, we performed a genome-wide association study (GWAS...

    Authors: Huiyu Wang, Xiaoyi Wang, Yongli Yang, Yixuan Zhu, Shuyan Wang, Qiang Chen, Dawei Yan, Xinxing Dong, Mingli Li and Shaoxiong Lu
    Citation: BMC Genomics 2024 25:582
  6. Phospholipases constitute a diverse category of enzymes responsible for the breakdown of phospholipids. Their involvement in signal transduction with a pivotal role in plant development and stress responses is...

    Authors: Mazahar Moin, Pradeep Reddy Bommineni and Wricha Tyagi
    Citation: BMC Genomics 2024 25:581
  7. Understanding growth regulatory pathways is important in aquaculture, fisheries, and vertebrate physiology generally. Machine learning pattern recognition and sensitivity analysis were employed to examine meta...

    Authors: Sarah A. S. Rajab, Linnea K. Andersen, Linas W. Kenter, David L. Berlinsky, Russell J. Borski, Andrew S. McGinty, Christopher M. Ashwell, Peter R. Ferket, Harry V. Daniels and Benjamin J. Reading
    Citation: BMC Genomics 2024 25:580
  8. Disease can drastically impair common bean (Phaseolus vulgaris L.) production. Anthracnose, caused by the fungal pathogen Colletotrichum lindemuthianum (Sacc. and Magnus) Briosi and Cavara, is one of the diseases...

    Authors: Yujie Chang, Yonghui Liu, Lanfen Wang, Shumin Wang and Jing Wu
    Citation: BMC Genomics 2024 25:579
  9. Rose myrtle (Rhodomyrtus tomentosa (Ait.) Hassk), is an evergreen shrub species belonging to the family Myrtaceae, which is enriched with bioactive volatiles (α-pinene and β-caryophyllene) with medicinal and indu...

    Authors: Ling Yang, Jingjing Jin, Shanwu Lyu, Fangqiu Zhang, Peijian Cao, Qiaomei Qin, Guanghui Zhang, Chen Feng, Peng Lu, Huiguang Li and Shulin Deng
    Citation: BMC Genomics 2024 25:578
  10. Several core breeding and supporting lines of the Qingyuan partridge chicken, a representative local chicken breed in China, have been developed over 20 years. Consequently, its economic traits related to grow...

    Authors: Xing Zhang, Liu Yang, Zhuojun Xie, Jiankang Gan, Piao Zhu, Jiani Song, Huimin Kang, Zhengfen Zhang, Lingbin Liu, Hai Xiang and Hua Li
    Citation: BMC Genomics 2024 25:577
  11. Chronic kidney disease (CKD) is a complex disorder that has become a high prevalence global health problem, with diabetes being its predominant pathophysiologic driver. Autosomal genetic variation only explain...

    Authors: Marisa Cañadas-Garre, Blanca Baños-Jaime, Joaquín J. Maqueda, Laura J. Smyth, Ruaidhri Cappa, Ryan Skelly, Claire Hill, Eoin P. Brennan, Ross Doyle, Catherine Godson, Alexander P. Maxwell and Amy Jayne McKnight
    Citation: BMC Genomics 2024 25:576
  12. Staphylococcus shinii appears as an umbrella species encompassing several strains of Staphylococcus pseudoxylosus and Staphylococcus xylosus. Given its phylogenetic closeness to S. xylosus, S. shinii can be found...

    Authors: Ana Sosa-Fajardo, Cristian Díaz-Muñoz, David Van der Veken, Inés Pradal, Marko Verce, Stefan Weckx and Frédéric Leroy
    Citation: BMC Genomics 2024 25:575
  13. The Qinghai Tibetan sheep, a local breed renowned for its long hair, has experienced significant deterioration in wool characteristics due to the absence of systematic breeding practices. Therefore, it is impe...

    Authors: Dehong Tian, Quanbang Pei, Hanjing Jiang, Jijun Guo, Xianghua Ma, Buying Han, Xue Li and Kai Zhao
    Citation: BMC Genomics 2024 25:574
  14. KNOXs, a type of homeobox genes that encode atypical homeobox proteins, play an essential role in the regulation of growth and development, hormonal response, and abiotic stress in plants. However, the KNOX gene ...

    Authors: Li-Cong Jia, Zi-Tong Yang, Li-Li Shang, Shao-Zhen He, Huan Zhang, Xu Li and Guo-Sheng Xin
    Citation: BMC Genomics 2024 25:572
  15. The dramatic increase of antimicrobial resistance in the healthcare realm has become inexorably linked to the abuse of antibiotics over the years. Therefore, this study seeks to identify potential postbiotic m...

    Authors: Sharleen Livina Isaac, Ahmad Zuhairi Abdul Malek, Nurul Syafika Hazif, Farah Syahrain Roslan, Amalia Mohd Hashim, Adelene Ai-Lian Song, Raha Abdul Rahim and Wan Ahmad Kamil Wan Nur Ismah
    Citation: BMC Genomics 2024 25:571
  16. Compound eyes formation in decapod crustaceans occurs after the nauplius stage. However, the key genes and regulatory mechanisms of compound eye development during crustacean embryonic development have not yet...

    Authors: Congcong Yan, Zixuan Wu, Yujie Liu, Yuying Sun and Jiquan Zhang
    Citation: BMC Genomics 2024 25:570
  17. Transgenic (Tg) mice are widely used in biomedical research, and they are typically generated by injecting transgenic DNA cassettes into pronuclei of one-cell stage zygotes. Such animals often show unreliable ...

    Authors: Hiromi Miura, Ayaka Nakamura, Aki Kurosaki, Ai Kotani, Masaru Motojima, Keiko Tanaka, Shigeru Kakuta, Sanae Ogiwara, Yuhsuke Ohmi, Hirotaka Komaba, Samantha L.P. Schilit, Cynthia C. Morton, Channabasavaiah B. Gurumurthy and Masato Ohtsuka
    Citation: BMC Genomics 2024 25:568
  18. Advances of spatial transcriptomics technologies enabled simultaneously profiling gene expression and spatial locations of cells from the same tissue. Computational tools and approaches for integration of tran...

    Authors: Yuanyuan Ma, Lifang Liu, Yongbiao Zhao, Bo Hang and Yanduo Zhang
    Citation: BMC Genomics 2024 25:566
  19. Expansion of genomic resources for the Pacific white shrimp (Litopenaeus vannamei), such as the construction of dense genetic linkage maps, is crucial for the application of genomic tools in order to improve econ...

    Authors: Baltasar F. Garcia, Vito A. Mastrochirico-Filho, Jousepth Gallardo-Hidalgo, Gabriel R. Campos-Montes, Thania Medrano-Mendoza, Psique Victoria Rivero-Martínez, Alejandra Caballero-Zamora, Diogo T. Hashimoto and José M. Yáñez
    Citation: BMC Genomics 2024 25:565
  20. Mesenchymal Stem Cells are ideal seed cells for tissue repair and cell therapy and have promising applications in regenerative medicine and tissue engineering. Using Platelet-Rich Plasma as an adjuvant to crea...

    Authors: Pengxiu Dai, Yi Wu, Yaxin Gao, Mengnan Li, Mingde Zhu, Haojie Xu, Xiancheng Feng, Yaping Jin and Xinke Zhang
    Citation: BMC Genomics 2024 25:564
  21. Broussonetia papyrifera is an economically significant tree with high utilization value, yet its cultivation is often constrained by soil contamination with heavy metals (HMs). Effective scientific cultivation ma...

    Authors: Zhenggang Xu, Shen Yang, Chenhao Li, Muhong Xie, Yi He, Sisi Chen, Yan Tang, Dapei Li, Tianyu Wang and Guiyan Yang
    Citation: BMC Genomics 2024 25:563
  22. Floral transition in cereals is a critical phenomenon influenced by exogenous and endogenous signals, determining crop yield and reproduction. Flowering Locus T-like (FT-like) genes encode a mobile florigen, the ...

    Authors: Jingai Tan, Sajid Muhammad, Lantian Zhang, Haohua He and Jianmin Bian
    Citation: BMC Genomics 2024 25:562
  23. Artemisia selengensis, classified within the genus Artemisia of the Asteraceae family, is a perennial herb recognized for its dual utility in culinary and medicinal domains. There are few studies on the chloropla...

    Authors: Yuhang Wang, Qingying Wei, Tianyuan Xue, Sixiao He, Jiao Fang and Changli Zeng
    Citation: BMC Genomics 2024 25:561
  24. Nitzschia closterium f. minutissima is a commonly available diatom that plays important roles in marine aquaculture. It was originally classified as Nitzschia (Bacillariaceae, Bacillariophyta) but is currently re...

    Authors: Yajun Li, Jinman He, Xiuxia Zhang and Xiaodong Deng
    Citation: BMC Genomics 2024 25:560
  25. The crossbreeding of specialized beef cattle breeds with Chinese indigenous cattle is a common method of genetic improvement. Xia’nan cattle, a crossbreed of Charolais and Nanyang cattle, is China’s first spec...

    Authors: Xingya Song, Zhi Yao, Zijing Zhang, Shijie Lyu, Ningbo Chen, Xingshan Qi, Xian Liu, Weidong Ma, Wusheng Wang, Chuzhao Lei, Yu Jiang, Eryao Wang and Yongzhen Huang
    Citation: BMC Genomics 2024 25:559
  26. Indigenous Chinese cattle have abundant genetic diversity and a long history of artificial selection, giving local breeds advantages in adaptability, forage tolerance and resistance. The detection of selective...

    Authors: Hengwei Yu, Ke Zhang, Gong Cheng, Chugang Mei, Hongbao Wang and Linsen Zan
    Citation: BMC Genomics 2024 25:558
  27. Reducing the levels of dietary protein is an effective nutritional approach in lowering feed cost and nitrogen emissions in ruminants. The purpose of this study was to evaluate the effects of dietary Lys/Met r...

    Authors: Qiurong Ji, Fengshuo Zhang, Quyangangmao Su, Tingli He, Zhenling Wu, Kaina Zhu, Xuan Chen, Zhiyou Wang, Shengzhen Hou and Linsheng Gui
    Citation: BMC Genomics 2024 25:557
  28. The search for new bioactive natural compounds with anticancer activity is still of great importance. Even though their potential for diagnostics and treatment of cancer has already been proved, the availabili...

    Authors: Linda Petijová, Jana Henzelyová, Júlia Kuncová, Martina Matoušková and Eva Čellárová
    Citation: BMC Genomics 2024 25:555
  29. Sperm storage capacity (SSC) determines the duration of fertility in hens and is an important reproduction trait that cannot be ignored in production. Currently, the genetic mechanism of SSC is still unclear in h...

    Authors: Ruitang Chai, Cong Xiao, Zhuliang Yang, Wenya Du, Ke Lv, Jiayi Zhang and Xiurong Yang
    Citation: BMC Genomics 2024 25:554
  30. Development of the human pancreas requires the precise temporal control of gene expression via epigenetic mechanisms and the binding of key transcription factors. We quantified genome-wide patterns of DNA meth...

    Authors: Ailsa MacCalman, Elisa De Franco, Alice Franklin, Christine S. Flaxman, Sarah J. Richardson, Kathryn Murrall, Joe Burrage, Emma M. Walker, Noel G. Morgan, Andrew T. Hattersley, Emma L. Dempster, Eilis Hannon, Aaron R. Jeffries, Nick D. L. Owens and Jonathan Mill
    Citation: BMC Genomics 2024 25:553
  31. The disputed phylogenetic position of Aerides flabellata Rolfe ex Downie, due to morphological overlaps with related species, was investigated based on evidence of complete chloroplast (cp) genomes. The structura...

    Authors: Kaifeng Tao, Lei Tao, Jialin Huang, Hanning Duan, Yan Luo and Lu Li
    Citation: BMC Genomics 2024 25:552
  32. Because number of matured muscle fibers in poultry does not increase after birth, the meat yield is mainly determined during embryogenesis. We previously indicated breast muscle grew rapidly from 18th day afte...

    Authors: Lihong Gu, Jile Chen, Chengjun Hu, Dingfa Wang, Shuqian Huan, Guang Rong, Renlong Lv and Tieshan Xu
    Citation: BMC Genomics 2024 25:551
  33. Salinity is a significant abiotic stress that affects plants from germination through all growth stages. This study was aimed to determine the morpho-physiological and genetic variations in BC1F2, BC2F1 and F3 ge...

    Authors: Kritika Sharma, Shikha Yashveer, Vikram Singh, Sudhir Sharma, Mandeep Redhu and Mehdi Rahimi
    Citation: BMC Genomics 2024 25:550
  34. Despite Spirochetales being a ubiquitous and medically important order of bacteria infecting both humans and animals, there is extremely limited information regarding their bacteriophages. Of the genus Treponema,...

    Authors: Rachel Ridgway, Hanshuo Lu, Tim R. Blower, Nicholas James Evans and Stuart Ainsworth
    Citation: BMC Genomics 2024 25:549
  35. Gibel carp (Carassius gibelio) is a cyprinid fish that originated in eastern Eurasia and is considered as invasive in European freshwater ecosystems. The populations of gibel carp in Europe are mostly composed of...

    Authors: Florian Jacques, Tomáš Tichopád, Martin Demko, Vojtěch Bystrý, Kristína Civáňová Křížová, Mária Seifertová, Kristýna Voříšková, Md Mehedi Hasan Fuad, Lukáš Vetešník and Andrea Šimková
    Citation: BMC Genomics 2024 25:548
  36. Environmental temperature is critical in regulating biological functions in fish. S. prenanti is a kind of cold-water fish, but of which we have little knowledge about the metabolic adaptation and physiological r...

    Authors: Aiyu Wang, Run Zhang, Xianshu Zhang, Chunjie Chen, Quan Gong, Linjie Wang and Yan Wang
    Citation: BMC Genomics 2024 25:547
  37. Purple flowering stalk (Brassica rapa var. purpuraria) is a widely cultivated plant with high nutritional and medicinal value and exhibiting strong adaptability during growing. Mitochondrial (mt) play important r...

    Authors: Yihui Gong, Xin Xie, Guihua Zhou, Meiyu Chen, Zhiyin Chen, Peng Li and Hua Huang
    Citation: BMC Genomics 2024 25:546
  38. Several single nucleotide polymorphism (SNP) pipelines exist, each offering its own advantages. Among them and described here is vSNP that has been developed over the past decade and is specifically tailored t...

    Authors: Jessica Hicks, Tod Stuber, Kristina Lantz, Mia Torchetti and Suelee Robbe-Austerman
    Citation: BMC Genomics 2024 25:545
  39. In the realm of multi-environment prediction, when the goal is to predict a complete environment using the others as a training set, the efficiency of genomic selection (GS) falls short of expectations. Genoty...

    Authors: Osval A. Montesinos-López, Andrew W. Herr, José Crossa, Abelardo Montesinos-López and Arron H. Carter
    Citation: BMC Genomics 2024 25:544
  40. Homopolymer (HP) sequencing is error-prone in next-generation sequencing (NGS) assays, and may induce false insertion/deletions and substitutions. This study aimed to evaluate the performance of dichromatic an...

    Authors: HuiJuan Chen, Bing Wang, LiLi Cai, YiRan Zhang, YingShuang Shu, Wen Liu, Xue Leng, JinCheng Zhai, BeiFang Niu, QiMing Zhou and ShuNan Cao
    Citation: BMC Genomics 2024 25:542
  41. Flight can drastically enhance dispersal capacity and is a key trait defining the potential of exotic insect species to spread and invade new habitats. The phytophagous European spongy moths (ESM, Lymantria dispa...

    Authors: Gwylim S. Blackburn, Christopher I. Keeling, Julien Prunier, Melody A. Keena, Catherine Béliveau, Richard Hamelin, Nathan P. Havill, Francois Olivier Hebert, Roger C. Levesque, Michel Cusson and Ilga Porth
    Citation: BMC Genomics 2024 25:541
  42. The citral-type is the most common chemotype in Cinnamomum bodinieri Levl (C. bodinieri), which has been widely used in the daily necessities, cosmetics, biomedicine, and aromatic areas due to their high citral c...

    Authors: Qingyan Ling, Beihong Zhang, Yanbo Wang, Zufei Xiao, Jiexi Hou, Qingqing Liu, Jie Zhang, Changlong Xiao, Zhinong Jin and Yuanqiu Liu
    Citation: BMC Genomics 2024 25:540
  43. Squamous promoter binding protein-like (SPL) genes encode plant-specific transcription factors (TFs) that play essential roles in modulating plant growth, development, and stress response. Pea (Pisum sativum L.) ...

    Authors: Long Li, Jian bo Xu, Zhi wen Zhu, Rui Ma, Xiao zong Wu and Yu ke Geng
    Citation: BMC Genomics 2024 25:539
  44. Authors: Rick Masonbrink, Tom R. Maier, Usha Muppirala, Arun S. Seetharam, Etienne Lord, Parijat S. Juvale, Jeremy Schmutz, Nathan T. Johnson, Dmitry Korkin, Melissa G. Mitchum, Benjamin Mimee, Sebastian Eves-van den Akker, Matthew Hudson, Andrew J. Severin and Thomas J. Baum
    Citation: BMC Genomics 2024 25:537

    The original article was published in BMC Genomics 2019 20:119

  45. The formation of pharmacologically active components in medicinal plants is significantly impacted by DNA methylation. However, the exact mechanisms through which DNA methylation regulates secondary metabolism...

    Authors: Jing Dong, Xuelei Zhao, Xin Song, Shuo Wang, Xueying Zhao, Baoxiang Liang, Yuehong Long and Zhaobin Xing
    Citation: BMC Genomics 2024 25:536

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