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  1. Black flounder (Paralichthys orbignyanus, Pleuronectiformes) is a commercially significant marine fish with promising aquaculture potential in Argentina. Despite extensive studies on Black flounder aquaculture, i...

    Authors: Fernando Villarreal, Germán F. Burguener, Ezequiel J. Sosa, Nicolas Stocchi, Gustavo M. Somoza, Adrián G. Turjanski, Andrés Blanco, Jordi Viñas and Alejandro S. Mechaly
    Citation: BMC Genomics 2024 25:297
  2. Body weight and size are important economic traits in chickens. While many growth-related quantitative trait loci (QTLs) and candidate genes have been identified, further research is needed to confirm and char...

    Authors: Jie Wang, Jie Liu, Qiuxia Lei, Zhihe Liu, Haixia Han, Shuer Zhang, Chao Qi, Wei Liu, Dapeng Li, Fuwei Li, Dingguo Cao and Yan Zhou
    Citation: BMC Genomics 2024 25:296
  3. Muscle growth post-birth relies on muscle fiber number and size. Myofibre number, metabolic and contractile capacities are established pre-birth during prenatal myogenesis. The aim of this study was to identif...

    Authors: Fatemeh Mohammadi Nejad, Mohammadreza Mohammadabadi, Zahra Roudbari, Abdolvahab Ebrahimpour Gorji and Tomasz Sadkowski
    Citation: BMC Genomics 2024 25:294
  4. Alternative splicing (AS) is a principal mode of genetic regulation and one of the most widely used mechanisms to generate structurally and functionally distinct mRNA and protein variants. Dysregulation of AS ...

    Authors: Zheng Zhang, Limei Dong, Hai Tao, Yusong Dong, Wei Xiang, Fenghua Tao and Yingchun Zhao
    Citation: BMC Genomics 2024 25:293
  5. Dystrophinopathies are the most common X-linked inherited muscle diseases, and the disease-causing gene is DMD. Exonic duplications are a common type of pathogenic variants in the DMD gene, however, 5’ end exonic...

    Authors: Jiandong Shen, Taoli Ding, Xueping Sun, Ji Yang, Yue Zhang, Jing Wang, Mengdi Ge, Heng Xu, Jiazi Xie, Fei Wang and Feiyang Diao
    Citation: BMC Genomics 2024 25:292
  6. Thymus mongolicus (family Lamiaceae) is a Thyme subshrub with strong aroma and remarkable environmental adaptability. Limited genomic information limits the use of this plant.

    Authors: Zhenhua Dang, Ying Xu, Xin Zhang, Wentao Mi, Yuan Chi, Yunyun Tian, Yaling Liu and Weibo Ren
    Citation: BMC Genomics 2024 25:291
  7. Antimicrobial resistance (AMR) of Neisseria gonorrhoeae is a threat to public health as strains have developed resistance to antimicrobials available for the treatment of gonorrhea. Whole genome sequencing (WGS) ...

    Authors: Kelvin Lutambo Sarenje, Marco van Zwetselaar, Happiness Kumburu, Tolbert Sonda, Blandina Mmbaga, Owen Ngalamika, Margaret C. Maimbolwa, Amon Siame, Sody Munsaka and Geoffrey Kwenda
    Citation: BMC Genomics 2024 25:290
  8. Rahnella perminowiae S11P1 and Variovorax sp. S12S4 are two plant growth-promoting rhizobacteria that were previously isolated from the rhizosphere of Crocus sativus L. (saffron), and have demonstrated interestin...

    Authors: Rahma ZOUAGUI, Houda ZOUAGUI, Jamal AURAG, Azeddine IBRAHIMI and Laila SBABOU
    Citation: BMC Genomics 2024 25:289
  9. Larch is an important component of northern forests and a major cultivated tree species in restoration of forest cover using improved seed material. In recent years, the continuous low seed production has seve...

    Authors: Junfei Hao, Daixi Xu, Chen Wang, Qing Cao, Qingrong Zhao, Miaomiao Xie, Hanguo Zhang and Lei Zhang
    Citation: BMC Genomics 2024 25:288
  10. Antimicrobial resistance (AMR) remains a significant global health threat particularly impacting low- and middle-income countries (LMICs). These regions often grapple with limited healthcare resources and acce...

    Authors: Mike Nsubuga, Ronald Galiwango, Daudi Jjingo and Gerald Mboowa
    Citation: BMC Genomics 2024 25:287
  11. Encystment is an important survival strategy extensively employed by microbial organisms to survive unfavorable conditions. Single-celled ciliated protists (ciliates) are popular model eukaryotes for studying ...

    Authors: Didi Jin, Chao Li, Xiao Chen, Yurui Wang, Khaled A. S. Al-Rasheid, Naomi A. Stover, Chen Shao and Tengteng Zhang
    Citation: BMC Genomics 2024 25:286
  12. Climate change is a threat to sustainable livestock production and livelihoods in the tropics. It has adverse impacts on feed and water availability, disease prevalence, production, environmental temperature, ...

    Authors: Fasil Getachew Kebede, Martijn F.L. Derks, Tadelle Dessie, Olivier Hanotte, Carolina Pita Barros, Richard P.M.A. Crooijmans, Hans Komen and John W.M. Bastiaansen
    Citation: BMC Genomics 2024 25:284
  13. MYB transcription factors play an extremely important regulatory role in plant responses to stress and anthocyanin synthesis. Cloning of potato StMYB-related genes can provide a theoretical basis for the genetic ...

    Authors: Bi-Cong Chen, Xiao-Jie Wu, Qiu-Ju Dong and Ji-Ping Xiao
    Citation: BMC Genomics 2024 25:283
  14. Blood transcriptomic analysis is widely used to provide a detailed picture of a physiological state with potential outcomes for applications in diagnostics and monitoring of the immune response to vaccines. Ho...

    Authors: Elody Orcel, Hayat Hage, May Taha, Noémie Boucher, Emilie Chautard, Virginie Courtois and Adrien Saliou
    Citation: BMC Genomics 2024 25:282
  15. Drought stress can significantly affect plant growth, development, and yield. Fewer comparative studies have been conducted between different species of pines, particularly involving Pinus yunnanensis var. pygmae...

    Authors: Feng Xiao, Yang Zhao, Xiurong Wang, Xueyan Jian and Yao Yang
    Citation: BMC Genomics 2024 25:281
  16. Atrial fibrillation (AF) is a prevalent arrhythmic condition resulting in increased stroke risk and is associated with high mortality. Electrolyte imbalance can increase the risk of AF, where the relationship ...

    Authors: Yang Wu, Xiang-Jun Kong, Ying-Ying Ji, Jun Fan, Cheng-Cheng Ji, Xu-Miao Chen, Yue-Dong Ma, An-Li Tang, Yun-Jiu Cheng and Su-Hua Wu
    Citation: BMC Genomics 2024 25:280
  17. The majority of bat species have developed remarkable echolocation ability, especially for the laryngeally echolocating bats along with high-frequency hearing. Adaptive evolution has been widely detected for t...

    Authors: Xintong Li, Hui Wang, Xue Wang, Mingyue Bao, Ruyi Sun, Wentao Dai, Keping Sun and Jiang Feng
    Citation: BMC Genomics 2024 25:279
  18. There is an ongoing process in which mitochondrial sequences are being integrated into the nuclear genome. The importance of these sequences has already been revealed in cancer biology, forensic, phylogenetic ...

    Authors: Bálint Biró, Zoltán Gál, Zsófia Fekete, Eszter Klecska and Orsolya Ivett Hoffmann
    Citation: BMC Genomics 2024 25:278
  19. Indian jointvetch (Aeschynomene indica) is a common and pernicious weed found in the upland direct-seeding rice fields in the lower reaches of the Yangtze River in China. However, there are few reports on the deg...

    Authors: Yuan Gao, TianYu Chen, Jiaqi Long, Guohui Shen and Zhihui Tian
    Citation: BMC Genomics 2024 25:277
  20. Plant diseases caused by pathogenic fungi are devastating. However, commonly used fungicides are harmful to the environment, and some are becoming ineffective due to fungal resistance. Therefore, eco-friendly ...

    Authors: Ee Li, Kaiquan Liu, Shuhan Yang, Ling Li, Kun Ran, Xiaoli Sun, Jie Qu, Li Zhao, Yuxiu Xin, Feng Zhu, Jingfang Ma, Feng Song and Zhenghua Li
    Citation: BMC Genomics 2024 25:276
  21. The spread of Popillia japonica in non-native areas (USA, Canada, the Azores islands, Italy and Switzerland) poses a significant threat to agriculture and horticulture, as well as to endemic floral biodiversity, ...

    Authors: Claudio Cucini, Sara Boschi, Rebecca Funari, Elena Cardaioli, Nicola Iannotti, Giovanni Marturano, Francesco Paoli, Mirella Bruttini, Antonio Carapelli, Francesco Frati and Francesco Nardi
    Citation: BMC Genomics 2024 25:275
  22. Tuber starch and steroidal glycoalkaloid (SGA)-related traits have been consistently prioritized in potato breeding, while allelic variation pattern of genes that underlie these traits is less explored.

    Authors: Hongbo Li, Matthijs Brouwer, Elena Del Pup, Natascha van Lieshout, Richard Finkers, Christian W. B. Bachem and Richard G. F. Visser
    Citation: BMC Genomics 2024 25:274
  23. There are two major genetic types of Epstein-Barr Virus (EBV): type 1 (EBV-1) and type 2 (EBV-2). EBV functions by manipulating gene expression in host B cells, using virus-encoded gene regulatory proteins inc...

    Authors: Kenyatta C. M. F. Viel, Sreeja Parameswaran, Omer A. Donmez, Carmy R. Forney, Matthew R. Hass, Cailing Yin, Sydney H. Jones, Hayley K. Prosser, Arame A. Diouf, Olivia E. Gittens, Lee E. Edsall, Xiaoting Chen, Hope Rowden, Katelyn A. Dunn, Rui Guo, Andrew VonHandorf…
    Citation: BMC Genomics 2024 25:273
  24. Mung bean (Vigna radiata (L.) Wilczek), is an important pulse crop in the global south. Early flowering and maturation are advantageous traits for adaptation to northern and southern latitudes. This study investi...

    Authors: Kevin O. Chiteri, Ashlyn Rairdin, Kulbir Sandhu, Sven Redsun, Andrew Farmer, Jamie A. O’Rourke, Steven B. Cannon and Arti Singh
    Citation: BMC Genomics 2024 25:270
  25. Polymorphisms of Plasmodium falciparum chloroquine resistance transporter (pfcrt), Plasmodium falciparum multi-drug resistance 1 (pfmdr1) and Plasmodium falciparum kelch 13-propeller (pfk13) genes are accepted as...

    Authors: Phunuch Muhamad, Papichaya Phompradit, Wanna Chaijaroenkul and Kesara Na-Bangchang
    Citation: BMC Genomics 2024 25:269
  26. The core regulation of the abscisic acid (ABA) signalling pathway comprises the multigenic families PYL, PP2C, and SnRK2. In this work, we conducted a genome-wide study of the components of these families in Cucu...

    Authors: Jessica Iglesias-Moya, Álvaro Benítez, María Segura, Sonsoles Alonso, Dolores Garrido, Cecilia Martínez and Manuel Jamilena
    Citation: BMC Genomics 2024 25:268
  27. In every omics experiment, genes or their products are identified for which even state of the art tools are unable to assign a function. In the biotechnology chassis organism Pseudomonas putida, these proteins of...

    Authors: Steven Tavis and Robert L. Hettich
    Citation: BMC Genomics 2024 25:267
  28. Over the last decades, it was subject of many studies to investigate the genomic connection of milk production and health traits in dairy cattle. Thereby, incorporating functional information in genomic analys...

    Authors: Helen Schneider, Ana-Marija Krizanac, Clemens Falker-Gieske, Johannes Heise, Jens Tetens, Georg Thaller and Jörn Bennewitz
    Citation: BMC Genomics 2024 25:265
  29. Escherichia coli, a ubiquitous inhabitant of the gut microbiota, has been recognized as an indicator of fecal contamination and a potential reservoir for antibiotic resistance genes. Its prevalence in drinking wa...

    Authors: Oluwaseyi Samuel Olanrewaju, Lesego G Molale-Tom, Rinaldo K Kritzinger and Cornelius Carlos Bezuidenhout
    Citation: BMC Genomics 2024 25:263
  30. Plague, as an ancient zoonotic disease caused by Yersinia pestis, has brought great disasters. The natural plague focus of Marmota himalayana in the Qinghai-Tibet Plateau is the largest, which has been constantly...

    Authors: Ying Ma, Pengbo Liu, Ziyan Li, Yujuan Yue, Yanmei Zhao, Jian He, Jiaxin Zhao, Xiuping Song, Jun Wang, Qiyong Liu and Liang Lu
    Citation: BMC Genomics 2024 25:262
  31. In this study, we conducted an assembly and analysis of the organelle genomes of Aconitum carmichaelii. Our investigation encompassed the examination of organelle genome structures, gene transfer events, and the ...

    Authors: Rongxiang Zhang, Niyan Xiang, Changjiang Qian, Shuwen Liu, Yuemei Zhao, Guiyu Zhang, Pei Wei, Jianfeng Li and Tao Yuan
    Citation: BMC Genomics 2024 25:260
  32. Sugar Will Eventually be Exported Transporter (SWEET) proteins are highly conserved in various organisms and play crucial roles in sugar transport processes. However, SWEET proteins in peanuts, an essential le...

    Authors: Yang Li, Mengjia Fu, Jiaming Li, Jie Wu, Zhenyang Shua, Tiantian Chen, Wen Yao and Dongxin Huai
    Citation: BMC Genomics 2024 25:259
  33. The interactions between the rumen microbiota and the host are crucial for the digestive and absorptive processes of ruminants, and they are heavily influenced by the climatic conditions of their habitat. Owin...

    Authors: Cheng Pan, Haiyan Li, Shehr Bano Mustafa, Cuomu Renqing, Zhenzhen Zhang, Jingjing Li, Tianzeng Song, Gaofu Wang and Wangsheng Zhao
    Citation: BMC Genomics 2024 25:258
  34. Congenital heart defects (CHD) are structural defects of the heart affecting approximately 1% of newborns. They exhibit low penetrance and non-Mendelian patterns of inheritance as varied and complex traits. Wh...

    Authors: Martin Broberg, Minna Ampuja, Samuel Jones, Tiina Ojala, Otto Rahkonen, Riikka Kivelä, James Priest, Aarno Palotie, Hanna M. Ollila and Emmi Helle
    Citation: BMC Genomics 2024 25:256
  35. Drug addiction is a serious problem worldwide and is influenced by genetic factors. The present study aimed to investigate the association between genetics and drug addiction among Han Chinese.

    Authors: Hanli Xu, Yulin Kang, Tingming Liang, Sifen Lu, Xiaolin Xia, Zuhong Lu, Lingming Hu, Li Guo, Lishu Zhang, Jiaqiang Huang, Lin Ye, Peiye Jiang, Yi Liu, Li Xinyi, Jin Zhai, Zi Wang…
    Citation: BMC Genomics 2024 25:255
  36. Neddylation, an important post-translational modification (PTM) of proteins, plays a crucial role in follicular development. MLN4924 is a small-molecule inhibitor of the neddylation-activating enzyme (NAE) tha...

    Authors: Mengjuan Chen, Yuqing Liu, Mingzhong Zuo, Meina Zhang, Zhitong Wang, Xin Li, Dongdong Yuan, Huifen Xu, Guangqing Yu and Ming Li
    Citation: BMC Genomics 2024 25:254
  37. The genus Pseudoroegneria (Nevski) Löve (Triticeae, Poaceae), whose genome symbol was designed as “St”, accounts for more than 60% of perennial Triticeae species. The diploid species Psudoroegneria libanotica ...

    Authors: Xingguang Zhai, Dandan Wu, Chen Chen, Xunzhe Yang, Shaobo Cheng, Lina Sha, Shuhan Deng, Yiran Cheng, Xing Fan, Houyang Kang, Yi Wang, Dengcai Liu, Yonghong Zhou and Haiqin Zhang
    Citation: BMC Genomics 2024 25:253
  38. The SnRK (sucrose non-fermentation-related protein kinase) plays an important role in regulating various signals in plants. However, as an important bamboo shoot and wood species, the response mechanism of PheSnR...

    Authors: Huifang Zheng, Yali Xie, Changhong Mu, Wenlong Cheng, Yucong Bai and Jian Gao
    Citation: BMC Genomics 2024 25:252
  39. The Illumina family of Infinium Methylation BeadChip microarrays has been widely used over the last 15 years for genome-wide DNA methylation profiling, including large-scale and population-based studies, due t...

    Authors: Timothy J. Peters, Braydon Meyer, Lauren Ryan, Joanna Achinger-Kawecka, Jenny Song, Elyssa M. Campbell, Wenjia Qu, Shalima Nair, Phuc Loi-Luu, Phillip Stricker, Elgene Lim, Clare Stirzaker, Susan J. Clark and Ruth Pidsley
    Citation: BMC Genomics 2024 25:251
  40. Immunotherapy is a practical therapeutic approach in breast cancer (BRCA), and the role of FLI1 in immune regulation has gradually been unveiled. However, the specific role of FLI1 in BRCA was conflicted; thus...

    Authors: Jianying Pei, Ying Peng, Kexin Ma, Chunyan Lan, Tingting Zhang, Yan Li, Xiaofang Chen and Huafang Gao
    Citation: BMC Genomics 2024 25:250
  41. Iron plays a crucial role in the growth of Mycobacterium tuberculosis (M. tuberculosis). However, the precise regulatory mechanism governing this system requires further elucidation. Additionally, limited studies...

    Authors: Yameng Li, Yifan Li, Yao Liu, Xianglong Kong, Ningning Tao, Yawei Hou, Tingting Wang, Qilin Han, Yuzhen Zhang, Fei Long and Huaichen Li
    Citation: BMC Genomics 2024 25:249
  42. Quality traits are essential determinants of consumer preferences. Dioscorea alata (Greater Yam), is a starchy tuber crop in tropical regions. However, a comprehensive understanding of the genetic basis underlyin...

    Authors: Ana Paula Zotta Mota, Komivi Dossa, Mathieu Lechaudel, Denis Cornet, Pierre Mournet, Sylvain Santoni, David Lopez and Hana Chaïr
    Citation: BMC Genomics 2024 25:248
  43. Cyclospora cayetanensis is a protozoan parasite that causes intestinal illness in humans worldwide. Despite its global distribution, most genomic data for C. cayetanensis has been obtained from isolates collected...

    Authors: Monica Santin, Aleksey Molokin, Guadalupe E. Orozco-Mosqueda, Sonia Almeria and Jenny Maloney
    Citation: BMC Genomics 2024 25:246

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