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  1. Long-term artificial selection for growth rate and lean meat rate has eventually led to meat quality deterioration. Muscle fiber type is a key factor that markedly affects meat quality. circRNAs have been repo...

    Authors: Xiaona Zhuang, Zekun Lin, Fang Xie, Junyi Luo, Ting Chen, Qianyun Xi, Yongliang Zhang and Jiajie Sun
    Citation: BMC Genomics 2022 23:294
  2. Paspalum notatum ‘Flugge’ is a diploid with 20 chromosomes (2n = 20) multi-purpose subtropical herb native to South America and has a high ecological significance. It is currently widely planted in tropical and s...

    Authors: Zhenfei Yan, Huancheng Liu, Yu Chen, Juan Sun, Lichao Ma, Aihua Wang, Fuhong Miao, Lili Cong, Hui Song, Xue Yin, Qi Wang, Yayun Gong, Guofeng Yang and Zengyu Wang
    Citation: BMC Genomics 2022 23:293
  3. Pigeon circovirus (PiCV) infections in pigeons (Columba livia) have been reported worldwide. Currently, pigeon racing is becoming increasingly popular and considered to be a national sport in China, and even, the...

    Authors: Haoran Wang, Hui Gao, Zhiwen Jiang, Leibo Shi, Pengwei Zhao, Yanming Zhang and Chengbao Wang
    Citation: BMC Genomics 2022 23:290
  4. Circular RNA (circRNA), as a new members of noncoding RNA family, have vital functions in many biological processes by as microRNA sponges or competing endogenous RNAs (ceRNAs). However, little has been report...

    Authors: Deyin Zhang, Xiaoxue Zhang, Fadi Li, Xiaolong Li, Yuan Zhao, Yukun Zhang, Liming Zhao, Dan Xu, Jianghui Wang, Xiaobin Yang, Panpan Cui and Weimin Wang
    Citation: BMC Genomics 2022 23:288
  5. The influence of linkage disequilibrium (LD), epistasis, and inbreeding on genotypic variance continues to be an important area of investigation in genetics and evolution. Although the current knowledge about ...

    Authors: José Marcelo Soriano Viana and Antonio Augusto Franco Garcia
    Citation: BMC Genomics 2022 23:286
  6. Spot form net blotch (SFNB) caused by the necrotrophic fungal pathogen Pyrenophora teres f. maculata (Ptm) is an economically important disease of barley that also infects wheat. Using genetic analysis to charact...

    Authors: Shaun J. Clare, Kasia M. Duellman, Jonathan K. Richards, Roshan Sharma Poudel, Lance F. Merrick, Timothy L. Friesen and Robert S. Brueggeman
    Citation: BMC Genomics 2022 23:285
  7. The mitochondrial (mt) genomes of 15 species of sucking lice from seven families have been studied to date. These louse species have highly dynamic, fragmented mt genomes that differ in the number of minichrom...

    Authors: Yalun Dong, Min Zhao and Renfu Shao
    Citation: BMC Genomics 2022 23:283
  8. Bees are the most important group of pollinators worldwide and their populations are declining. In natural conditions, Apis mellifera depends exclusively on food from the field to meet its physiological demands. ...

    Authors: Marcelo Polizel Camilli, Samir Moura Kadri, Marcus Vinícius Niz Alvarez, Paulo Eduardo Martins Ribolla and Ricardo Oliveira Orsi
    Citation: BMC Genomics 2022 23:282
  9. Egg production is one of the most important economic traits in the poultry industry. The hypothalamic-pituitary–gonadal (HPG) axis plays an essential role in regulating reproductive activities. However, the ke...

    Authors: Xiping Yan, Hehe Liu, Jiwei Hu, Xingfa Han, Jingjing Qi, Qingyuan Ouyang, Bo Hu, Hua He, Liang Li, Jiwen Wang and Xianyin Zeng
    Citation: BMC Genomics 2022 23:281
  10. Helictotrichon virescens is a perennial grass that is primarily distributed in high altitude areas of 2000 ~ 4500 m. It is widely cultivated in the Qinghai-Tibet Plateau of China, strongly resistant to cold, and ...

    Authors: Mingjun Cheng, Kuoshu Cui, Mingmin Zheng, Tao Yang, Junjun Zheng, Xiaofeng Li, Xuan Luo, Yang Zhou, Ruizhen Zhang, Donghai Yan, Mingjiu Yao, Muhammad Zafar Iqbal, Qingping Zhou and Ruyu He
    Citation: BMC Genomics 2022 23:280
  11. Salivary gland (SMG) degeneration and dysfunction are common symptoms that occur after sex hormone deprivation, but the underlying mechanisms remain largely unknown. Additionally, immunocastration, which cause...

    Authors: Xingfa Han, Xue Xia, Yong Zhuo, Lun Hua, Guozhi Yu, Guixian Bu, Xiaohan Cao, XiaoGang Du, Qiuxia Liang, Xianyin Zeng and Fengyan Meng
    Citation: BMC Genomics 2022 23:279
  12. Rice sheath blight, caused by Rhizoctonia solani Kühn (teleomorph: Thanatephorus cucumeris), is one of the most severe diseases in rice (Oryza sativa L.) worldwide. Studies on resistance genes and resistance mech...

    Authors: Xiaohe Yang, Xin Gu, Junjie Ding, Liangliang Yao, Xuedong Gao, Maoming Zhang, Qingying Meng, Songhong Wei and Junfan Fu
    Citation: BMC Genomics 2022 23:278
  13. Global climate change together with growing desertification is leading to increased dust emissions to the atmosphere, drawing attention to possible impacts on marine ecosystems receiving dust deposition. Since...

    Authors: Hayedeh Behzad, Hajime Ohyanagi, Badr Alharbi, Martin Ibarra, Mohammed Alarawi, Yoshimoto Saito, Carlos M. Duarte, Vladimir Bajic, Katsuhiko Mineta and Takashi Gojobori
    Citation: BMC Genomics 2022 23:277
  14. Immortalized cell lines are widely used model systems whose genomes are often highly rearranged and polyploid. However, their genome structure is seldom deciphered and is thus not accounted for during analyses...

    Authors: Jacob Lewerentz, Anna-Mia Johansson, Jan Larsson and Per Stenberg
    Citation: BMC Genomics 2022 23:276
  15. Shiga toxin-producing Escherichia coli (STEC) O157:H7 is a pathogen known to reside in cattle feedlots. This retrospective study examined 181 STEC O157:H7 strains collected over 23 years from a closed-system feed...

    Authors: Margaret D. Weinroth, Michael L. Clawson, Terrance M. Arthur, James E. Wells, Dayna M. Brichta-Harhay, Norval Strachan and James L. Bono
    Citation: BMC Genomics 2022 23:275
  16. Cutaneous squamous cell carcinoma (cSCC) is the second most common type of skin cancer, the prognosis for patients with metastatic cSCC remains relatively poor. Thus, there is an urgent need to identify new di...

    Authors: Yu Hu, Rong Li, Hongyin Chen, Lihao Chen, Xuyue Zhou, Linxi Liu, Mei Ju, Kun Chen and Dan Huang
    Citation: BMC Genomics 2022 23:274
  17. Transcription factors (TFs) play central roles in regulating gene expression. With the rapid growth in the use of high-throughput sequencing methods, there is a need to develop a comprehensive data processing ...

    Authors: Guan-Dong Shang, Zhou-Geng Xu, Mu-Chun Wan, Fu-Xiang Wang and Jia-Wei Wang
    Citation: BMC Genomics 2022 23(Suppl 1):272

    This article is part of a Supplement: Volume 23 Supplement 1

  18. The grass carp has great economic value and occupies an important evolutionary position. Genomic information regarding this species could help better understand its rapid growth rate as well as its unique body...

    Authors: Chang-Song Wu, Zi-You Ma, Guo-Dong Zheng, Shu-Ming Zou, Xu-Jie Zhang and Yong-An Zhang
    Citation: BMC Genomics 2022 23:271
  19. Authors: Yanxian Yang, Yongqiang Yang, Mohamed Abd El-Gawad El-Sayed Ahmed, Mingyang Qin, Ruowen He, Yiping Wu, Xiaoxue Liang, Lan-Lan Zhong, Ping Chen, Baoguo Deng, Reem Mostafa Hassan, Weihong Wen, Lingqing Xu, Xubin Huang, Lin Xu and Guo-Bao Tian
    Citation: BMC Genomics 2022 23:270

    The original article was published in BMC Genomics 2022 23:20

  20. In biological systems, metabolomics can not only contribute to the discovery of metabolic signatures for disease diagnosis, but is very helpful to illustrate the underlying molecular disease-causing mechanism....

    Authors: Yongtian Wang, Liran Juan, Jiajie Peng, Tao Wang, Tianyi Zang and Yadong Wang
    Citation: BMC Genomics 2022 23(Suppl 1):269

    This article is part of a Supplement: Volume 23 Supplement 1

  21. Of the > 2600 Salmonella serovars, Salmonella enterica serovar I 4,[5],12:i:- (serovar I 4,[5],12:i:-) has emerged as one of the most common causes of human salmonellosis and the most frequent multidrug-resistant...

    Authors: Julian M. Trachsel, Bradley L. Bearson, Brian W. Brunelle and Shawn M. D. Bearson
    Citation: BMC Genomics 2022 23:268
  22. The growth and development of muscle stem cells (MuSCs) are significant events known to affect muscle plasticity, disease, meat production, and meat quality, which involves the types and functions of mRNA and ...

    Authors: Rui-Men Zhang, Yu Pan, Chao-Xia Zou, Qiang An, Juan-Ru Cheng, Peng-Ju Li, Zi-Hua Zheng, Yan Pan, Wan-You Feng, Su-Fang Yang, De-Shun Shi, Ying-Ming Wei and Yan-Fei Deng
    Citation: BMC Genomics 2022 23:267
  23. The plant-specific IQ67-domain (IQD) gene family plays an important role in plant development and stress responses. However, little is known about the IQD family in common wheat (Triticum aestivum L), an agricult...

    Authors: Qinglin Ke, Huifan Sun, Minqiang Tang, Ruihan Luo, Yan Zeng, Mengxing Wang, Yihan Li, Zhimin Li and Licao Cui
    Citation: BMC Genomics 2022 23:264
  24. Wound healing is a representative phenomenon of potato tubers subjected to mechanical injuries. Our previous results found that benzo-(1,2,3)-thiadiazole-7-carbothioic acid S-methyl ester (BTH) promoted the wo...

    Authors: Hong Jiang, Xue Li, Li Ma, Yingyue Ren, Yang Bi and Dov Prusky
    Citation: BMC Genomics 2022 23:263
  25. Cool temperature egg storage prior to incubation is a common practice in the broiler industry; however, prolonged egg storage causes increased embryonic mortality and decreased hatchability and growth in survi...

    Authors: K. Brady, C. C. Talbot Jr, J. A. Long, G. Welch, N. French, D. Nicholson and M. R. Bakst
    Citation: BMC Genomics 2022 23:262
  26. Colorectal cancer (CRC) is the third most common cancer worldwide and is influenced by environmental and genetic factors. Although numerous genetic loci for CRC have been identified, the overall understanding ...

    Authors: Eun Bi Lim, Ho-Suk Oh, Kang Chang Kim, Moon-Ho Kim, Young Jin Kim, Bong Jo Kim, Chu Won Nho and Yoon Shin Cho
    Citation: BMC Genomics 2022 23:261
  27. The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused global disruption of human health and activity. Being able to trace the early outbreak of SARS-CoV-2 within a locality can inform pub...

    Authors: Longhua Guo, James Boocock, Evann E. Hilt, Sukantha Chandrasekaran, Yi Zhang, Chetan Munugala, Laila Sathe, Noah Alexander, Valerie A. Arboleda, Jonathan Flint, Eleazar Eskin, Chongyuan Luo, Shangxin Yang, Omai B. Garner, Yi Yin, Joshua S. Bloom…
    Citation: BMC Genomics 2022 23:260
  28. The characteristics of muscle fibers determine the growth and meat quality of poultry. In this study, we performed a weighted gene co-expression network analysis (WGCNA) on the muscle fiber characteristics and...

    Authors: Yuanfang Li, Pengtao Yuan, Shengxin Fan, Bin Zhai, Wenjiao Jin, Donghua Li, Hong Li, Guirong Sun, Ruili Han, Xiaojun Liu, Yadong Tian, Guoxi Li and Xiangtao Kang
    Citation: BMC Genomics 2022 23:258
  29. Polyandrous social insects such as the honey bee are prime candidates for parental manipulation of gene expression in offspring. Although there is good evidence for parent-of-origin effects in honey bees the e...

    Authors: Owen T. Watson, Gabriele Buchmann, Paul Young, Kitty Lo, Emily J. Remnant, Boris Yagound, Mitch Shambrook, Andrew F. Hill, Benjamin P. Oldroyd and Alyson Ashe
    Citation: BMC Genomics 2022 23:257
  30. Ophiorrhiza pumila (Rubiaceae) is capable of producing camptothecin (CPT), one monoterpene indole alkaloid extensively employed in the treatment of multiple cancers. Transcription factors (TFs) GATA are a group ...

    Authors: Min Shi, Qikai Huang, Yao Wang, Can Wang, Ruiyan Zhu, Siwei Zhang and Guoyin Kai
    Citation: BMC Genomics 2022 23:256
  31. The pro-neural transcription factor ASCL1 is a master regulator of neurogenesis and a key factor necessary for the reprogramming of permissive cell types to neurons. Endogenously, ASCL1 expression is often ass...

    Authors: Laura M. Woods, Fahad R. Ali, Roshna Gomez, Igor Chernukhin, Daniel Marcos, Lydia M. Parkinson, Ahmad N. Abou Tayoun, Jason S. Carroll and Anna Philpott
    Citation: BMC Genomics 2022 23:255
  32. Long noncoding RNAs (lncRNAs) are involved in physiological and pathological processes. However, no studies have been conducted on the relationship between lncRNAs and renal aging.

    Authors: Jie Li, Fanfan Gao, Limin Wei, Lei Chen, Ning Qu, Lu Zeng, Yulong Luo, Xinmei Huang and Hongli Jiang
    Citation: BMC Genomics 2022 23:254
  33. Classification of parasitic bopyrids has traditionally been based on morphological characteristics, but phylogenetic relationships have remained elusive due to limited information provided by morphological dat...

    Authors: Ruiwen Wu, Rongxiu Guo, Qianqian Xi, Gustav Paulay and Jianmei An
    Citation: BMC Genomics 2022 23:253
  34. Cystic fibrosis (CF, MIM# 219,700) is an autosomal recessive disease caused by pathogenic variants within the CFTR gene. It was shown that genetic variants located in cis can affect disease severity or treatment ...

    Authors: Nika V. Petrova, Nataliya Y. Kashirskaya, Tatyana A. Vasilyeva, Natalia V. Balinova, Andrey V. Marakhonov, Elena I. Kondratyeva, Elena K. Zhekaite, Anna Y. Voronkova, Sergey I. Kutsev and Rena A. Zinchenko
    Citation: BMC Genomics 2022 23:252
  35. When plants are subjected to cold stress, they undergo a series of molecular and physiological changes to protect themselves from injury. Indica cultivars can usually withstand only mild cold stress in a relat...

    Authors: Zhichi Zeng, Sichen Zhang, Wenyan Li, Baoshan Chen and Wenlan Li
    Citation: BMC Genomics 2022 23:251
  36. With advances in next-generation sequencing technologies, an unprecedented amount of soybean accessions has been sequenced by many individual studies and made available as raw sequencing reads for post-genomic...

    Authors: Hengyou Zhang, He Jiang, Zhenbin Hu, Qijian Song and Yong-qiang Charles An
    Citation: BMC Genomics 2022 23:250
  37. The recent big data revolution in Genomics, coupled with the emergence of Deep Learning as a set of powerful machine learning methods, has shifted the standard practices of machine learning for Genomics. Even ...

    Authors: Eliška Chalupová, Ondřej Vaculík, Jakub Poláček, Filip Jozefov, Tomáš Majtner and Panagiotis Alexiou
    Citation: BMC Genomics 2022 23:248
  38. Chromatin architecture is critical for gene expression during development. Matrix attachment regions (MARs) control and regulate chromatin dynamics. The position of MARs in the genome determines the expression...

    Authors: Alekhya Rani Chunduri, Resma Rajan, Anugata Lima, Senthilkumar Ramamoorthy and Anitha Mamillapalli
    Citation: BMC Genomics 2022 23:247
  39. Apple Glomerella leaf spot (GLS) and apple bitter rot (ABR) are two devastating foliar and fruit diseases on apples. The different symptoms of GLS and ABR could be related to different transcriptome patterns. ...

    Authors: Bowen Jiang, Ting Cai, Xiaoying Yang, Yuya Dai, Kaixuan Yu, Pingping Zhang, Pingliang Li, Caixia Wang, Na Liu, Baohua Li and Sen Lian
    Citation: BMC Genomics 2022 23:246
  40. Melanoma is a highly heterogeneous and aggressive cutaneous malignancy. Ferroptosis, a new pathway of cell death depending on the intracellar iron, has been shown to be significantly associated with apoptosis ...

    Authors: Yuxuan Chen, Linlin Guo, Zijie Zhou, Ran An and Jiecong Wang
    Citation: BMC Genomics 2022 23:245
  41. External environmental factors, such as salt, alkali and drought, severely limit the acreage and yield of alfalfa. The mining of tolerance-related genes in alfalfa and improving the stress resistance of this p...

    Authors: Yuying Yuan, Jinqiu Yu, Lingzelai Kong, Wenkai Zhang, Xiangyin Hou and Guowen Cui
    Citation: BMC Genomics 2022 23:243
  42. The emerging epitranscriptome plays an essential role in female fertility. As the most prevalent internal mRNA modification, N6-methyladenine (m6A) methylation regulate mRNA fate and translational efficiency. How...

    Authors: Chang Liu, Linshuang Li, Bo Yang, Yiqing Zhao, Xiyuan Dong, Lixia Zhu, Xinling Ren, Bo Huang, Jing Yue, Lei Jin, Hanwang Zhang and Lan Wang
    Citation: BMC Genomics 2022 23:240

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