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  1. F. nucleatum, as an important periodontal pathogen, is not only closely associated with the development of periodontitis, but also implicated in systemic diseases. Macrophages may act as an important mediator in...

    Authors: Jieyu Zhou, Lin Liu, Peiyao Wu, Lei Zhao and Yafei Wu
    Citation: BMC Genomics 2022 23:826
  2. The transition from fertilized egg to embryo in chicken requires activation of hundreds of genes that were mostly inactivated before fertilization, which is accompanied with various biological processes. Undou...

    Authors: Liqin Liao, Ziqi Yao, Jie Kong, Xinheng Zhang, Hongxin Li, Weiguo Chen and Qingmei Xie
    Citation: BMC Genomics 2022 23:825
  3. The solute carrier 4 (SLC4) gene family is involved in a variety of physiological processes in organisms and is essential for maintaining acid-base balance in the body. The slc4 genes have been extensively studie...

    Authors: Chuanjiang Zhou, Bo Hu, Yongtao Tang, Xin Chen, Zhigang Ma, Qiqi Ding and Guoxing Nie
    Citation: BMC Genomics 2022 23:824
  4. Embryonic and fetal development is very susceptible to the availability of nutrients that can interfere with the setting of epigenomes, thus modifying the main metabolic pathways and impacting the health and p...

    Authors: Aurélie Sécula, Lisa E. Bluy, Hervé Chapuis, Agnès Bonnet, Anne Collin, Laure Gress, Alexis Cornuez, Xavier Martin, Loys Bodin, Cécile M. D. Bonnefont and Mireille Morisson
    Citation: BMC Genomics 2022 23:823
  5. A loss-of-function mutation in ATPase phospholipid transporting 11-B (putative) (ATP11B) gene causing cerebral small vessel disease (SVD) in vivo, and a single intronic nucleotide polymorphism in ATP11B: rs148771...

    Authors: Wen-Kai Yu, Yun-Chao Wang, Yuan Gao, Chang-He Shi, Yu Fan, Lu-Lu Yu, Zi-Chen Zhao, Shan-Shan Li, Yu-Ming Xu and Yu-Sheng Li
    Citation: BMC Genomics 2022 23:822
  6. Hungarian white goose has excellent down production performance and was introduced to China in 2010. The growth and development of feather follicles has an important impact on down production. Goose feather fo...

    Authors: Yupu Song, Chang Liu, Yuxuan Zhou, Guangyu Lin, Chenguang Xu, Petunia Msuthwana, Sihui Wang, Jingyun Ma, Fangming Zhuang, Xianou Fu, Yudong Wang, Tuoya Liu, Qianyan Liu, Jingbo Wang, Yujian Sui and Yongfeng Sun
    Citation: BMC Genomics 2022 23:821
  7. BBX genes are key players in the regulation of various developmental processes and stress responses, which have been identified and functionally characterized in many plant species. However, our understanding of...

    Authors: Binghui Shan, Guohua Bao, Tianran Shi, Lulu Zhai, Shaomin Bian and Xuyan Li
    Citation: BMC Genomics 2022 23:820
  8. As omics measurements profiled on different molecular layers are interconnected, integrative approaches that incorporate the regulatory effect from multi-level omics data are needed. When the multi-level omics...

    Authors: Wenqing Jiang, Roby Joehanes, Daniel Levy, George T O’Connor and Josée Dupuis
    Citation: BMC Genomics 2022 23:819
  9. Leuconostoc gelidum and Leuconostoc gasicomitatum have dual roles in foods. They may spoil cold-stored packaged foods but can also be beneficial in kimchi fermentation. The impact in food science as well as the l...

    Authors: Per Johansson, Elina Säde, Jenni Hultman, Petri Auvinen and Johanna Björkroth
    Citation: BMC Genomics 2022 23:818
  10. Freshwaters are exposed to multiple anthropogenic stressors, leading to habitat degradation and biodiversity decline. In particular, agricultural stressors are known to result in decreased abundances and commu...

    Authors: Marie V. Brasseur, Arne J. Beermann, Vasco Elbrecht, Daniel Grabner, Bianca Peinert-Voss, Romana Salis, Martina Weiss, Christoph Mayer and Florian Leese
    Citation: BMC Genomics 2022 23:816
  11. Causal variants for complex traits, such as eQTL are often found in non-coding regions of the genome, where they are hypothesised to influence phenotypes by regulating gene expression. Many regulatory regions ...

    Authors: Claire P. Prowse-Wilkins, Thomas J. Lopdell, Ruidong Xiang, Christy J. Vander Jagt, Mathew D. Littlejohn, Amanda J. Chamberlain and Michael E. Goddard
    Citation: BMC Genomics 2022 23:815
  12. Due to its strong abiotic stress tolerance, common vetch is widely cultivated as a green manure and forage crop in grass and crop rotation systems. The comprehensive molecular mechanisms activated in common ve...

    Authors: Rui Dong, Ben Luo, Li Tang, Qiu-xia Wang, Zhong-Jie Lu, Chao Chen, Feng Yang, Song Wang and Jin He
    Citation: BMC Genomics 2022 23:814
  13. As the direct organ of villus, hair follicles have obvious seasonal cycles. The hair follicle cycle is orchestrated by multiple cell types that together direct cell renewal and differentiation. But the regulat...

    Authors: Qingbo Zheng, Na Ye, Pengjia Bao, Xiaolan Zhang, Fubin Wang, Lanhua Ma, Min Chu, Xian Guo, Chunnian Liang, Heping Pan and Ping Yan
    Citation: BMC Genomics 2022 23:813

    The Correction to this article has been published in BMC Genomics 2023 24:60

  14. Dof transcription factors (TFs) containing C2-C2 zinc finger domains are plant-specific regulatory proteins, playing crucial roles in a variety of biological processes. However, little is known about Dof in Camel...

    Authors: Tao Luo, Yanan Song, Huiling Gao, Meng Wang, Hongli Cui, Chunli Ji, Jiping Wang, Lixia Yuan and Runzhi Li
    Citation: BMC Genomics 2022 23:812
  15. 14–3-3 proteins are essential in regulating various biological processes and abiotic stress responses in plants. Although 14–3-3 proteins have been studied in model plants such as Arabidopsis thaliana and Oryza s...

    Authors: Feiyan He, Shaoguang Duan, Yinqiao Jian, Jianfei Xu, Jun Hu, Zhicheng Zhang, Tuanrong Lin, Feng Cheng and Guangcun Li
    Citation: BMC Genomics 2022 23:811
  16. Genome editing using CRISPR/Cas9 has become a powerful tool in zebrafish to generate targeted gene knockouts models. However, its use for targeted knock-in remains challenging due to inefficient homology direc...

    Authors: Blake Carrington, Ramanagouda Ramanagoudr-Bhojappa, Erica Bresciani, Tae-Un Han and Raman Sood
    Citation: BMC Genomics 2022 23:810
  17. Arcidae, comprising about 260 species of ark shells, is an ecologically and economically important lineage of bivalve mollusks. Interestingly, mitochondrial genomes of several Arcidae species are 2–3 times lar...

    Authors: Ning Zhang, Yuanning Li, Kenneth M. Halanych, Lingfeng Kong and Qi Li
    Citation: BMC Genomics 2022 23:809
  18. Bemisia tabaci Gennadius (Hemiptera: Aleyrodidae) is a serious pest of crops in different regions of the world. Our recent studies on the joint application of Akanthomyces attenuatus (a pathogenic insect fungus)...

    Authors: Jianhui Wu, Tingfei Sun, Muhammad Hamid Bashir, Baoli Qiu, Xingmin Wang and Shaukat Ali
    Citation: BMC Genomics 2022 23:808
  19. ST08 and ST09 are potent curcumin derivatives with antiproliferative, apoptotic, and migrastatic properties. Both ST08 and ST09 exhibit in vitro and in vivo anticancer properties. As reported earlier, these de...

    Authors: Snehal Nirgude, Sagar Desai and Bibha Choudhary
    Citation: BMC Genomics 2022 23:807
  20. Cyclophilin (CYP) belongs to the immunophilin family and has peptidyl-prolyl cis-trans isomerase (PPIase) activity, which catalyzes the cis-trans isomerization process of proline residues. CYPs widely exist in eu...

    Authors: Zhi-Wen Qiao, Da-Ru Wang, Xun Wang, Chun-Xiang You and Xiao-Fei Wang
    Citation: BMC Genomics 2022 23:806
  21. Different types of skeletal myofibers exhibit distinct physiological and metabolic properties that are associated with meat quality traits in livestock. Alternative splicing (AS) of pre-mRNA can generate multi...

    Authors: Baohua Tan, Jiekang Zeng, Fanming Meng, Shanshan Wang, Liyao Xiao, Xinming Zhao, Linjun Hong, Enqin Zheng, Zhenfang Wu, Zicong Li and Ting Gu
    Citation: BMC Genomics 2022 23:804
  22. Acinetobacter calcoaceticus-A. baumannii (ACB) complex pathogens are known for their prevalence in nosocomial infections and extensive antimicrobial resistance (AMR) capabilities. While genomic studies worldwide...

    Authors: Aura Rahman, Ashley Styczynski, Abdul Khaleque, Sakib Abrar Hossain, Abdus Sadique, Arman Hossain, Mukesh Jain, Syeda Naushin Tabassum, Fahad Khan, Mohammad Sami Salman Bhuiyan, Jahidul Alam, Amith Khandakar, Mohammad Kamruzzaman, Chowdhury Rafiqul Ahsan, Saad Bin Abul Kashem, Muhammad E. H. Chowdhury…
    Citation: BMC Genomics 2022 23:802
  23. Aquatic animals show diverse body coloration, and the formation of animal body colour is a complicated process. Increasing evidence has shown that microRNAs (miRNAs) play important regulatory roles in many lif...

    Authors: Pei Wang, Gang Xiong, Dan Zeng, Jianguo Zhang, Lingrui Ge, Li Liu, Xiaoqing Wang and Yazhou Hu
    Citation: BMC Genomics 2022 23:801
  24. Seagrasses are higher marine flowering plants that evolved from terrestrial plants, but returned to the sea during the early evolution of monocotyledons through several separate lineages. Thus, they become a g...

    Authors: Jun Chen, Yu Zang, Shuo Liang, Song Xue, Shuai Shang, Meiling Zhu, Ying Wang and Xuexi Tang
    Citation: BMC Genomics 2022 23:800
  25. Cetacean hindlimbs were lost and their forelimb changed into flippers characterized by webbed digits and hyperphalangy, thus allowing them to adapt to a completely aquatic environment. However, the underlying ...

    Authors: Linxia Sun, Xinghua Rong, Xing Liu, Zhenpeng Yu, Qian Zhang, Wenhua Ren, Guang Yang and Shixia Xu
    Citation: BMC Genomics 2022 23:797
  26. Calcareous outcrops, rocky areas composed of calcium carbonate (CaCO3), often host a diverse, specialized, and threatened biomineralizing fauna. Despite the repeated evolution of physiological and morphological a...

    Authors: T. Mason Linscott, Andrea González-González, Takahiro Hirano and Christine E. Parent
    Citation: BMC Genomics 2022 23:796
  27. Texture quality is impotent for melon (Cucumis melo L.) fruit. β-galactosidase (β-Gal, EC 3.2.1.23) is an important cell wall glycosyl hydrolase involved in fruit softening, However, the β-Gal gene (BGALs) family...

    Authors: Haobin Pan, Yinhan Sun, Miaomiao Qiao and Hongyan Qi
    Citation: BMC Genomics 2022 23:795
  28. Dicranostigma leptopodum (Maxim.) Fedde is a perennial herb with bright yellow flowers, well known as "Hongmao Cao" for its medicinal properties, and is an excellent early spring flower used in urban greening. Ho...

    Authors: Lei Wang, Fuxing Li, Ning Wang, Yongwei Gao, Kangjia Liu, Gangmin Zhang and Jiahui Sun
    Citation: BMC Genomics 2022 23:794
  29. Fruit flies (Diptera: Tephritidae) comprise species of agricultural and economic importance. Five such fruit fly species are known to affect commercial fruit production and export in South Africa: Ceratitis capit...

    Authors: Kelsey J Andrews, Rachelle Bester, Aruna Manrakhan and Hans J Maree
    Citation: BMC Genomics 2022 23:793
  30. Somatic mutations drive colorectal cancer (CRC) by disrupting gene regulatory mechanisms. Distinct combinations of mutations can result in unique changes to regulatory mechanisms leading to variability in the ...

    Authors: Jonathan W. Villanueva, Lawrence Kwong, Teng Han, Salvador Alonso Martinez, Michael T. Shanahan, Matt Kanke, Lukas E. Dow, Charles G. Danko and Praveen Sethupathy
    Citation: BMC Genomics 2022 23:792
  31. The high-affinity K+ transporter (HAK) family plays a vital role in K+ uptake and transport as well as in salt and drought stress responses. In the present study, we identified 22 HAK genes in each Medicago trunc...

    Authors: Qian Li, Wenxuan Du, Xinge Tian, Wenbo Jiang, Bo Zhang, Yuxiang Wang and Yongzhen Pang
    Citation: BMC Genomics 2022 23:791
  32. Excessive deposition of abdominal fat poses serious problems in broilers owing to rapid growth. Recently, the evolution of the existing knowledge on long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) ...

    Authors: Yang Jing, Bohan Cheng, Haoyu Wang, Xue Bai, Qi Zhang, Ning Wang, Hui Li and Shouzhi Wang
    Citation: BMC Genomics 2022 23:790
  33. The exact mechanism of atrial fibrillation (AF)-induced heart failure (HF) remains unclear. Proteomics and metabolomics were integrated to in this study, as to describe AF patients’ dysregulated proteins and m...

    Authors: Haiyu Zhang, Lu Wang, Dechun Yin, Qi Zhou, Lin Lv, Zengxiang Dong and Yuanqi Shi
    Citation: BMC Genomics 2022 23:789
  34. 17 Y-chromosomal STRs which are part of the Yfiler Amplification Kit were investigated in 493 unrelated Pakistani individuals belonging to the Punjabi, Sindhi, Baloch, and Pathan ethnic groups. We have assesse...

    Authors: Muhammad Salman Ikram, Tahir Mehmood, Allah Rakha, Sareen Akhtar, Muhammad Imran Mahmood Khan, Wedad Saeed Al-Qahtani, Fatmah Ahmed Safhi, Sibte Hadi, Chuan-Chao Wang and Atif Adnan
    Citation: BMC Genomics 2022 23:788
  35. Sitting at the interface of gene expression and host-pathogen interaction, polymerase associated factor 1 complex (PAF1C) is a rising player in the innate immune response. The complex localizes to the nucleus ...

    Authors: Matthew W. Kenaston, Oanh H. Pham, Marine J. Petit and Priya S. Shah
    Citation: BMC Genomics 2022 23:787
  36. Average backfat thickness (BFT) is a critical complex trait in pig and an important indicator for fat deposition and lean rate. Usually, genome-wide association study (GWAS) was used to discover quantitative trai...

    Authors: Haonan Zeng, Zhanming Zhong, Zhiting Xu, Jinyan Teng, Chen Wei, Zitao Chen, Wenjing Zhang, Xiangdong Ding, Jiaqi Li and Zhe Zhang
    Citation: BMC Genomics 2022 23:786
  37. Climate change will result in more frequent droughts that can impact soil-inhabiting microbiomes (rhizobiomes) in the agriculturally vital North American perennial grasslands. Rhizobiomes have contributed to e...

    Authors: Soumyadev Sarkar, Abigail Kamke, Kaitlyn Ward, Eli Hartung, Qinghong Ran, Brandi Feehan, Matthew Galliart, Ari Jumpponen, Loretta Johnson and Sonny T.M. Lee
    Citation: BMC Genomics 2022 23:784
  38. DBA/1 mice have a higher susceptibility to generalized audiogenic seizures (AGSz) and seizure-induced respiratory arrest (S-IRA) than C57/BL6 mice. The gene expression profile might be potentially related to t...

    Authors: Lina Zhu, Deng Chen, Xin Lin and Ling Liu
    Citation: BMC Genomics 2022 23:783
  39. The identification of gene regulatory networks (GRNs) facilitates the understanding of the underlying molecular mechanism of various biological processes and complex diseases. With the availability of single-c...

    Authors: Jinting Guan, Yang Wang, Yongjie Wang, Yan Zhuang and Guoli Ji
    Citation: BMC Genomics 2022 23:782
  40. Long noncoding RNAs (lncRNAs) are a diverse class of RNAs that are critical for gene regulation, DNA repair, and splicing, and have been implicated in development, stress response, and cancer. However, the fun...

    Authors: Rebecca A. MacPherson, Vijay Shankar, Lakshmi T. Sunkara, Rachel C. Hannah, Marion R. Campbell III, Robert R. H. Anholt and Trudy F. C. Mackay
    Citation: BMC Genomics 2022 23:781
  41. Important regulation occurs at the level of transcription in Plasmodium falciparum and growing evidence suggests that these apicomplexan parasites have complex regulatory networks. Recent studies implicate long n...

    Authors: Johanna Hoshizaki, Sophie H. Adjalley, Vandana Thathy, Kim Judge, Matthew Berriman, Adam J. Reid and Marcus C. S. Lee
    Citation: BMC Genomics 2022 23:780
  42. Cadmium (Cd) is a highly toxic pollutant in soil and water that severely hampers the growth and reproduction of plants. Phytoremediation has been presented as a cost-effective and eco-friendly method for addre...

    Authors: Chenchen Gan, Zhaochao Liu, Biao Pang, Dan Zuo, Yunyan Hou, Lizhou Zhou, Jie Yu, Li Chen, Hongcheng Wang, Lei Gu, Xuye Du, Bin Zhu and Yin Yi
    Citation: BMC Genomics 2022 23:778
  43. Plant mitogenomes vary widely in size and genomic architecture. Although hundreds of plant mitogenomes of angiosperm species have already been sequence-characterized, only a few mitogenomes are available from ...

    Authors: Birgit Kersten, Christian Rellstab, Hilke Schroeder, Sabine Brodbeck, Matthias Fladung, Konstantin V. Krutovsky and Felix Gugerli
    Citation: BMC Genomics 2022 23:776
  44. Infectious Salmon Anaemia virus (ISAV) is an orthomyxovirus responsible for large losses in Atlantic salmon (Salmo salar) aquaculture. Current available treatments and vaccines are not fully effective, and theref...

    Authors: Ophélie Gervais, Athina Papadopoulou, Remi Gratacap, Borghild Hillestad, Alan E. Tinch, Samuel A. M. Martin, Ross D. Houston and Diego Robledo
    Citation: BMC Genomics 2022 23:775

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