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  1. Bacteria of the genera Xylanibacter and Segatella are among the most dominant groups in the rumen microbiota. They are characterized by the ability to utilize different hemicelluloses and pectin of plant cell-wal...

    Authors: Urška Murovec and Tomaž Accetto
    Citation: BMC Genomics 2024 25:495
  2. Mammary gland development is a critical process in mammals, crucial for their reproductive success and offspring nourishment. However, the functional roles of key candidate genes associated with teat number, i...

    Authors: Xiaoli Guo, Chengcheng Zhao, Ruifei Yang, Yuzhe Wang and Xiaoxiang Hu
    Citation: BMC Genomics 2024 25:494
  3. Insects rely on sophisticated sensitive chemosensory systems to sense their complex chemical environment. This sensory process involves a combination of odorant receptors (ORs), gustatory receptors (GRs) and i...

    Authors: Ruipeng Chen, Junjie Yan, Jacob D. Wickham and Yulin Gao
    Citation: BMC Genomics 2024 25:493
  4. Rapeseed (Brassica napus L.), accounts for nearly 16% of vegetable oil, is the world’s second produced oilseed. However, pod shattering has caused significant yield loses in rapeseed production, particularly duri...

    Authors: Fugui Zhang, Nian Liu, Tianhua Chen, Hong Xu, Rui Li, Liyan Wang, Shuo Zhou, Qing’ao Cai, Xinzhe Hou, Ling Wang, Xingzhi Qian, Zonghe Zhu and Kejin Zhou
    Citation: BMC Genomics 2024 25:492
  5. Ruptured atherosclerotic plaques often precipitate severe ischemic events, such as stroke and myocardial infarction. Unraveling the intricate molecular mechanisms governing vascular smooth muscle cell (VSMC) b...

    Authors: Zhanli Peng, Qinghui Kan, Kangjie Wang, Tang Deng, Shenming Wang, Ridong Wu and Chen Yao
    Citation: BMC Genomics 2024 25:490
  6. The cellular origin of hypopharyngeal diseases is crucial for further diagnosis and treatment, and the microenvironment in tissues may also be associated with specific cell types at the same time. Normal adjac...

    Authors: Rui Guan, Ce Li, Fangmeng Gu, Wenming Li, Dongmin Wei, Shengda Cao, Fen Chang and Dapeng Lei
    Citation: BMC Genomics 2024 25:489
  7. Phosphorus plays a key role in plant adaptation to adversity and plays a positive role in the yield and quality formation of apples. Genes of the SPX domain-containing family are widely involved in the regulation...

    Authors: Zenghui Wang, Xiaowen Zhang, Xuemei Yang, Haixia Tang, Lijuan Feng, Yanlei Yin and Jialin Li
    Citation: BMC Genomics 2024 25:488
  8. The identification of low-frequency haplotypes, never observed in homozygous state in a population, is considered informative on the presence of potentially harmful alleles (candidate alleles), putatively invo...

    Authors: Katherine D. Arias, Iván Fernández, Juan Pablo Gutiérrez, Isabel Álvarez and Félix Goyache
    Citation: BMC Genomics 2024 25:487
  9. Amino acids are the basic components of protein and an important index to evaluate meat quality. With the rapid development of genomics, candidate regions and genes affecting amino acid content in livestock an...

    Authors: Rui Wang, Yinjuan Lu, Jingjing Qi, Yang Xi, Zhenyang Shen, Grace Twumasi, Lili Bai, Jiwei Hu, Jiwen Wang, Liang Li and Hehe Liu
    Citation: BMC Genomics 2024 25:486
  10. Indigenous chickens were developed through a combination of natural and artificial selection; essentially, changes in genomes led to the formation of these modern breeds via admixture events. However, their co...

    Authors: Xiaodong Tan, Lu Liu, Jie Dong, Minjie Huang, Jiawen Zhang, Qinghai Li, Huanhuan Wang, Lijuan Bai, Ming Cui, Zhenzhen Zhou, De Wu, Yun Xiang, Weifen Li and Deqian Wang
    Citation: BMC Genomics 2024 25:485
  11. Childhood glaucoma (CG) encompasses a heterogeneous group of genetic eye disorders that is responsible for approximately 5% of childhood blindness worldwide. Understanding the molecular aetiology is key to imp...

    Authors: Omayma Al-Saei, Samantha Malka, Nicholas Owen, Elbay Aliyev, Fazulur Rehaman Vempalli, Paulina Ocieczek, Bashayer Al-Khathlan, Khalid Fakhro and Mariya Moosajee
    Citation: BMC Genomics 2024 25:484
  12. The severity of COVID-19 is influenced by various factors including the presence of respiratory diseases. Studies have indicated a potential relationship between asthma and COVID-19 severity.

    Authors: Omayma Amri, Anne-Marie Madore, Anne-Marie Boucher-Lafleur and Catherine Laprise
    Citation: BMC Genomics 2024 25:482
  13. There is no consensus as to the origin of the domestic yak (Bos grunniens). Previous studies on yak mitochondria mainly focused on mitochondrial displacement loop (D-loop), a region with low phylogenetic resoluti...

    Authors: Xingdong Wang, Jie Pei, Lin Xiong, Pengjia Bao, Min Chu, Xiaoming Ma, Yongfu La, Chunnian Liang, Ping Yan and Xian Guo
    Citation: BMC Genomics 2024 25:481
  14. Hu sheep (HS), a breed of sheep carrying the FecB mutation gene, is known for its “year-round estrus and multiple births” and is an ideal model for studying the high fecundity mechanisms of livestock. Through ana...

    Authors: Tao Zhong, Dunying Hou, Qianjun Zhao, Siyuan Zhan, Linjie Wang, Li Li, Hongping Zhang, Wei Zhao, Shizhong Yang and Lili Niu
    Citation: BMC Genomics 2024 25:480
  15. In the context of early sowing of maize as a promising adaptation strategy that could significantly reduce the negative effects of climate change, an in-depth understanding of mechanisms underlying plant respo...

    Authors: Manja Božić, Dragana Ignjatović Micić, Nenad Delić and Ana Nikolić
    Citation: BMC Genomics 2024 25:479
  16. Tuberculosis (TB) represents a major global health challenge. Drug resistance in Mycobacterium tuberculosis (MTB) poses a substantial obstacle to effective TB treatment. Identifying genomic mutations in MTB isola...

    Authors: Weiye Qian, Nan Ma, Xi Zeng, Mai Shi, Mingqiang Wang, Zhiyuan Yang and Stephen Kwok-Wing Tsui
    Citation: BMC Genomics 2024 25:478
  17. Since domestication, both evolutionary forces and human selection have played crucial roles in producing adaptive and economic traits, resulting in animal breeds that have been selected for specific climates a...

    Authors: Chenxi Zhang, Hojjat Asadollahpour Nanaei, Niloufar Jafarpour Negari, Mahmoud Amiri Roudbar, Zeinab Amiri Ghanatsaman, Zhannur Niyazbekova and Xiaojun Yang
    Citation: BMC Genomics 2024 25:477
  18. Heterosis has successfully enhanced maize productivity and quality. Although significant progress has been made in delineating the genetic basis of heterosis, the molecular mechanisms underlying its genetic co...

    Authors: Weimin Zhan, Lianhua Cui, Shuling Yang, Kangni Zhang, Yanpei Zhang and Jianping Yang
    Citation: BMC Genomics 2024 25:476
  19. Single nucleotide polymorphism (SNP) markers play significant roles in accelerating breeding and basic crop research. Several soybean SNP panels have been developed. However, there is still a lack of SNP panel...

    Authors: Yongchao Niu, Wai-Shing Yung, Ching-Ching Sze, Fuk-Ling Wong, Man-Wah Li, Gyuhwa Chung and Hon-Ming Lam
    Citation: BMC Genomics 2024 25:475
  20. Flowering time has an important effect on regional adaptation and yields for crops. The tyrosine kinase-like (TKL) gene family is widely existed and participates in many biological processes in plants. Further...

    Authors: Peisen S. Su, Jingyu Li, Dongtian Zang, Zhiyu Wang, Yangyang Wu, Shatong Chi, Fanting Sun, Yufei Niu, Xuewen Hua, Jun Yan and Wenyang Ge
    Citation: BMC Genomics 2024 25:474
  21. Herein, we report results from a genome-wide study conducted to identify protein quantitative trait loci (pQTL) for circulating angiogenic and inflammatory protein markers in patients with metastatic colorecta...

    Authors: Julia C.F. Quintanilha, Alexander B. Sibley, Yingmiao Liu, Donna Niedzwiecki, Susan Halabi, Layne Rogers, Bert O’Neil, Hedy Kindler, William Kelly, Alan Venook, Howard L. McLeod, Mark J. Ratain, Andrew B. Nixon, Federico Innocenti and Kouros Owzar
    Citation: BMC Genomics 2024 25:473
  22. Caddisfly larvae produce silk containing heavy and light fibroins, similar to the silk of Lepidoptera, for the construction of underwater structures. We analyzed the silk of Limnephilus lunatus belonging to the c...

    Authors: Lenka Rouhova, Martina Zurovcova, Miluse Hradilova, Michal Sery, Hana Sehadova and Michal Zurovec
    Citation: BMC Genomics 2024 25:472
  23. Gut microbiota(GM) have been proven associated with lots of gastrointestinal diseases, but its causal relationship with Gastroesophageal reflux disease(GERD) and Barrett’s esophagus(BE) hasn’t been explored. W...

    Authors: Yuan Liu, Jiali Yu, Yuxiao Yang, Bingyu Han, Qiao Wang and Shiyu Du
    Citation: BMC Genomics 2024 25:471
  24. The absence of heterozygosity (AOH) is a kind of genomic change characterized by a long contiguous region of homozygous alleles in a chromosome, which may cause human genetic disorders. However, no method of l...

    Authors: Fei Tang, Zhonghua Wang, Yan Sun, Linlin Fan, Yun Yang, Xueqin Guo, Yaoshen Wang, Saiying Yan, Zhihong Qiao, Yun Li, Ting Jiang, Xiaoli Wang, Jianfen Man, Lina Wang, Shunyao Wang, Huanhuan Peng…
    Citation: BMC Genomics 2024 25:470
  25. Carotenoid cleavage oxygenases (CCOs) enzymes play a vital role in plant growth and development through the synthesis of apocarotenoids and their derivative. These chemicals are necessary for flower and fruit col...

    Authors: Arsalan Ahmad, Adnan Sami, Umer Habib, Muhammad Ali, Muhammad Shafiq, Muhammad Zeshan Haider, Shahbaz Ahmad, Baber Ali, Steve Harakeh, Rania M. Makki, Talha Chaudhary and Fathia A. Soudy
    Citation: BMC Genomics 2024 25:469
  26. Plant-specific TIFY proteins are widely found in terrestrial plants and play important roles in plant adversity responses. Although the genome of loquat at the chromosome level has been published, studies on t...

    Authors: Xulin Li, Ke Wen, Ling Zhu, Chaoying Chen, Tuo Yin, Xiuyao Yang, Ke Zhao, Yinqiang Zi, Huiyun Zhang, Xinping Luo and Hanyao Zhang
    Citation: BMC Genomics 2024 25:468
  27. Heat stress (HS) poses significant threats to the sustainability of livestock production. Genetically improving heat tolerance could enhance animal welfare and minimize production losses during HS events. Meas...

    Authors: Letícia Fernanda de Oliveira, Renata Veroneze, Katiene Régia Silva Sousa, Henrique A. Mulim, André Campelo Araujo, Yijian Huang, Jay S. Johnson and Luiz F. Brito
    Citation: BMC Genomics 2024 25:467
  28. The early 2 factor (E2F) family is characterized as a kind of transcription factor that plays an important role in cell division, DNA damage repair, and cell size regulation. However, its stress response has n...

    Authors: Yang Cao, Kexin Wang, Fengzhong Lu, Qi Li, Qingqing Yang, Bingliang Liu, Hayderbinkhalid Muhammad, Yingge Wang, Fengling Fu, Wanchen Li and Haoqiang Yu
    Citation: BMC Genomics 2024 25:465
  29. Detecting epistatic interactions (EIs) involves the exploration of associations among single nucleotide polymorphisms (SNPs) and complex diseases, which is an important task in genome-wide association studies....

    Authors: De-yu Tang, Yi-jun Mao, Jie Zhao, Jin Yang, Shi-yin Li, Fu-xiang Ren and Junxi Zheng
    Citation: BMC Genomics 2024 25:462
  30. Pseudomonas syringae pv. actinidiae (Psa) is an important bacterial plant pathogen that causes severe damage to the kiwifruit industry worldwide. Three Psa strains were recently obtained from different kiwifruit ...

    Authors: Qian Wang, Yiju Zhang, Rui Chen, Lei Zhang, Min Fu and Lixin Zhang
    Citation: BMC Genomics 2024 25:461
  31. Zingiber officinale Roscoe, colloquially known as ginger, is a crop of significant medicinal and culinary value that frequently encounters adversity stemming from inhospitable environmental conditions. The MYB tr...

    Authors: Hai-Tao Xing, Jia-Yu Shi, Shi-Qing Yin, Qing-Hong Wu, Jian-Ling Lv and Hong-Lei Li
    Citation: BMC Genomics 2024 25:460
  32. Genome-wide comparisons of populations are widely used to explore the patterns of nucleotide diversity and sequence divergence to provide knowledge on how natural selection and genetic drift affect the genome....

    Authors: Fahime Mohamadnejad Sangdehi, Minal S. Jamsandekar, Erik D. Enbody, Mats E. Pettersson and Leif Andersson
    Citation: BMC Genomics 2024 25:459
  33. While rabbits are used as models in skin irritation tests, the presence of irregular patches and thickening on the dorsal skin can affect precise evaluation. In this study, genes associated with patchiness or ...

    Authors: Bohao Zhao, Jiawei Cai, Xiyu Zhang, Jiali Li, Zhiyuan Bao, Yang Chen and Xinsheng Wu
    Citation: BMC Genomics 2024 25:458
  34. In this study, we investigated the codon bias of twelve mitochondrial core protein coding genes (PCGs) in eight Pleurotus strains, two of which are from the same species. The results revealed that the codons of a...

    Authors: Wei Gao, Xiaodie Chen, Jing He, Ajia Sha, Yingyong Luo, Wenqi Xiao, Zhuang Xiong and Qiang Li
    Citation: BMC Genomics 2024 25:456
  35. Most proteins exert their functions by interacting with other proteins, making the identification of protein-protein interactions (PPI) crucial for understanding biological activities, pathological mechanisms,...

    Authors: Xin Zeng, Fan-Fang Meng, Meng-Liang Wen, Shu-Juan Li and Yi Li
    Citation: BMC Genomics 2024 25:406
  36. In response to seasonal cold and food shortage, the Xizang plateau frogs, Nanorana parkeri (Anura: Dicroglossidae), enter a reversible hypometabolic state where heart rate and oxygen consumption in skeletal muscl...

    Authors: Yonggang Niu, Xuejing Zhang, Shengkang Men, Tisen Xu, Haiying Zhang, Xiangyong Li, Kenneth B. Storey and Qiang Chen
    Citation: BMC Genomics 2024 25:454
  37. Insect Cytochrome P450 monooxygenase (CYPs or P450s) plays an important role in detoxifying insecticides, causing insect populations to develop resistance. However, the molecular functions of P450 gene family in

    Authors: Chun Fu, Ding Yang, Wen Cong Long, XiMeng Xiao, HanYu Wang, Na Jiang and YaoJun Yang
    Citation: BMC Genomics 2024 25:453
  38. Circular RNAs (circRNAs) are a novel kind of non-coding RNAs proved to play crucial roles in the development of multiple diabetic complications. However, their expression and function in diabetes mellitus (DM)...

    Authors: Yan Huang, Hui-Min Liu, Qian-Ying Mao, Li-Ling Wu, Ruo-Lan Xiang and Guang-Yan Yu
    Citation: BMC Genomics 2024 25:450
  39. Previous studies have shown that protein kinase MoKin1 played an important role in the growth, conidiation, germination and pathogenicity in rice blast fungus, Magnaporthe oryzae. ΔMokin1 mutant showed significan...

    Authors: Lianhu Zhang, Yifan Zhang, Yankun Liu, Wenjing Miao, Jingyu Ai, Jingling Li, Song Peng, Songyan Li, Lifang Ye, Rong Zeng, Xugen Shi, Jian Ma, Yachun Lin, Weigang Kuang and Ruqiang Cui
    Citation: BMC Genomics 2024 25:449
  40. The health and size of the testes are crucial for boar fertility. Testicular development is tightly regulated by epigenetics. N6-methyladenosine (m6A) modification is a prevalent internal modification on mRNA ...

    Authors: Pengfei Zhang, Fei Zhang, Heming Sui, Xingyu Yang, Yiming Ji, Shenghao Zheng, Wei Li, Kun Cheng, Chonglong Wang, Jun Jiao, Xiaodong Zhang, Zubing Cao and Yunhai Zhang
    Citation: BMC Genomics 2024 25:447
  41. Air exposure is an inevitable source of stress that leads to significant mortality in Coilia nasus. Our previous research demonstrated that adding 10‰ NaCl to aquatic water could enhance survival rates, albeit th...

    Authors: Jun Gao, Qi Mang, Yuqian Liu, Yi Sun and Gangchun Xu
    Citation: BMC Genomics 2024 25:446

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