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  1. Content type: Research

    Plant biomass is the most abundant carbon source for many fungal species. In the biobased industry fungi, are used to produce lignocellulolytic enzymes to degrade agricultural waste biomass. Here we evaluated ...

    Authors: Claire Khosravi, Evy Battaglia, Roland S. Kun, Sacha Dalhuijsen, Jaap Visser, María Victoria Aguilar-Pontes, Miaomiao Zhou, Heino M. Heyman, Young-Mo Kim, Scott E. Baker and Ronald P. de Vries

    Citation: BMC Genomics 2018 19:214

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  2. Content type: Methodology article

    Understanding the diversity of repair outcomes after introducing a genomic cut is essential for realizing the therapeutic potential of genomic editing technologies. Targeted PCR amplification combined with Nex...

    Authors: Georgia Giannoukos, Dawn M. Ciulla, Eugenio Marco, Hayat S. Abdulkerim, Luis A. Barrera, Anne Bothmer, Vidya Dhanapal, Sebastian W. Gloskowski, Hariharan Jayaram, Morgan L. Maeder, Maxwell N. Skor, Tongyao Wang, Vic E. Myer and Christopher J. Wilson

    Citation: BMC Genomics 2018 19:212

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  3. Content type: Research

    Genotype-phenotype association has been one of the long-standing problems in bioinformatics. Identifying both the marginal and epistatic effects among genetic markers, such as Single Nucleotide Polymorphisms (...

    Authors: Easton Li Xu, Xiaoning Qian, Qilian Yu, Han Zhang and Shuguang Cui

    Citation: BMC Genomics 2018 19(Suppl 4):170

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    This article is part of a Supplement: Volume 19 Supplement 4

  4. Content type: Research article

    Perilla frutescens is well known for its high α-linolenic acid (ALA) accumulation in seeds and medicinal values as well as a source of edible and general-purpose oils. However, the regulatory mechanisms of the bi...

    Authors: BingNan Liao, YouJin Hao, JunXing Lu, HuiYang Bai, Li Guan and Tao Zhang

    Citation: BMC Genomics 2018 19:213

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  5. Content type: Research

    Haplotype assembly is the task of reconstructing haplotypes of an individual from a mixture of sequenced chromosome fragments. Haplotype information enables studies of the effects of genetic variations on an o...

    Authors: Abolfazl Hashemi, Banghua Zhu and Haris Vikalo

    Citation: BMC Genomics 2018 19(Suppl 4):191

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    This article is part of a Supplement: Volume 19 Supplement 4

  6. Content type: Research article

    White striping (WS) is an emerging muscular defect occurring on breast and thigh muscles of broiler chickens. It is characterized by the presence of white striations parallel to the muscle fibers and has signi...

    Authors: Eva Pampouille, Cécile Berri, Simon Boitard, Christelle Hennequet-Antier, Stéphane A. Beauclercq, Estelle Godet, Christophe Praud, Yves Jégo and Elisabeth Le Bihan-Duval

    Citation: BMC Genomics 2018 19:202

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  7. Content type: Research article

    Measures to improve bird performance have been sought due to the imminent phase out of in-feed antibiotics in poultry and continued demand for higher poultry feeding efficiency. Increasing grain particle size ...

    Authors: Sarbast K. Kheravii, Robert A. Swick, Mingan Choct and Shu-Biao Wu

    Citation: BMC Genomics 2018 19:208

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  8. Content type: Research article

    The anthocyanins are highly enriched in eggplants (Solanum melongena L.) with purple peel. However, our previous study showed that anthocyanins biosynthesis in eggplant cultivar ‘Lanshan Hexian’ was completely re...

    Authors: Jing Li, Yong-Jun He, Lu Zhou, Yang Liu, Mingmin Jiang, Li Ren and Huoying Chen

    Citation: BMC Genomics 2018 19:201

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  9. Content type: Research article

    Ranaviruses (family Iridoviridae, nucleocytoplasmic large DNA viruses) have been reported as promiscuous pathogens of cold-blooded vertebrates. Rana grylio virus (RGV, a ranavirus), from diseased frog Rana grylio

    Authors: Fei Ke, Jian-Fang Gui, Zhong-Yuan Chen, Tao Li, Cun-Ke Lei, Zi-Hao Wang and Qi-Ya Zhang

    Citation: BMC Genomics 2018 19:211

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  10. Content type: Research article

    Human herpesvirus-6A and -6B (HHV-6) are betaherpesviruses that reach > 90% seroprevalence in the adult population. Unique among human herpesviruses, HHV-6 can integrate into the subtelomeric regions of human ...

    Authors: Alexander L. Greninger, Giselle M. Knudsen, Pavitra Roychoudhury, Derek J. Hanson, Ruth Hall Sedlak, Hong Xie, Jon Guan, Thuy Nguyen, Vikas Peddu, Michael Boeckh, Meei-Li Huang, Linda Cook, Daniel P. Depledge, Danielle M. Zerr, David M. Koelle, Soren Gantt…

    Citation: BMC Genomics 2018 19:204

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  11. Content type: Research article

    In monogastric animals, phosphorus (P) homeostasis is maintained by regulating intestinal absorption, bone mobilization, and renal excretion. Since P is a non-renewable resource, a shortage is imminent due to ...

    Authors: Franziska Just, Michael Oster, Kirsten Büsing, Luisa Borgelt, Eduard Murani, Siriluck Ponsuksili, Petra Wolf and Klaus Wimmers

    Citation: BMC Genomics 2018 19:207

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  12. Content type: Research article

    The developmental gene regulatory network (GRN) that underlies skeletogenesis in sea urchins and other echinoderms is a paradigm of GRN structure, function, and evolution. This transcriptional network is deplo...

    Authors: Tanvi Shashikant, Jian Ming Khor and Charles A. Ettensohn

    Citation: BMC Genomics 2018 19:206

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  13. Content type: Research article

    Protein lysine malonylation, a newly discovered post-translational modification (PTM), plays an important role in diverse metabolic processes in both eukaryotes and prokaryotes. Common wheat is a major global ...

    Authors: Jiabin Liu, Guangyuan Wang, Qi Lin, Wenxing Liang, Zhiqiang Gao, Ping Mu, Guiquan Li and Limin Song

    Citation: BMC Genomics 2018 19:209

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  14. Content type: Research article

    Strains of Lactobacillus paracasei are present in many diverse environments, including dairy and plant materials and the intestinal tracts of humans and animals. Their adaptation to various niches is correlated t...

    Authors: Ewelina Stefanovic and Olivia McAuliffe

    Citation: BMC Genomics 2018 19:205

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  15. Content type: Methodology article

    Ribosomal RNA (rRNA) comprises at least 90% of total RNA extracted from mammalian tissue or cell line samples. Informative transcriptional profiling using massively parallel sequencing technologies requires ei...

    Authors: Zachary T. Herbert, Jamie P. Kershner, Vincent L. Butty, Jyothi Thimmapuram, Sulbha Choudhari, Yuriy O. Alekseyev, Jun Fan, Jessica W. Podnar, Edward Wilcox, Jenny Gipson, Allison Gillaspy, Kristen Jepsen, Sandra Splinter BonDurant, Krystalynne Morris, Maura Berkeley, Ashley LeClerc…

    Citation: BMC Genomics 2018 19(Suppl 2):199

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  16. Content type: Research article

    Black Aspergilli represent one of the most important fungal resources of primary and secondary metabolites for biotechnological industry. Having several black Aspergilli sequenced genomes should allow targetin...

    Authors: Elodie Choque, Christophe Klopp, Sophie Valiere, José Raynal and Florence Mathieu

    Citation: BMC Genomics 2018 19(Suppl 2):200

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  17. Content type: Research article

    Aneuploidy, or abnormal chromosome numbers, severely alters cell physiology and is widespread in cancers and other pathologies. Using model cell lines engineered to carry one or more extra chromosomes, it has ...

    Authors: Milena Dürrbaum, Christine Kruse, K. Julia Nieken, Bianca Habermann and Zuzana Storchová

    Citation: BMC Genomics 2018 19(Suppl 2):197

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  18. Content type: Research article

    Bulbs of the ornamental flower Lilium pumilum enter a period of dormancy after flowering in spring, and require exposure to cold for a period of time in order to release dormancy. Previous studies focused mainly ...

    Authors: Wang Wang, Xiaoxia Su, Zhongping Tian, Yu Liu, Yunwei Zhou and Miao He

    Citation: BMC Genomics 2018 19(Suppl 2):196

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  19. Content type: Methodology article

    Omics profiling is now a routine component of biomedical studies. In the analysis of omics data, clustering is an essential step and serves multiple purposes including for example revealing the unknown functio...

    Authors: Sebastian J. Teran Hidalgo and Shuangge Ma

    Citation: BMC Genomics 2018 19(Suppl 2):198

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  20. Content type: Research article

    Understanding variation in genome structure is essential to understand phenotypic differences within populations and the evolutionary history of species. A promising form of this structural variation is copy n...

    Authors: Vinicius H. da Silva, Veronika N. Laine, Mirte Bosse, Kees van Oers, Bert Dibbits, Marcel E. Visser, Richard P. M. A. Crooijmans and Martien A. M. Groenen

    Citation: BMC Genomics 2018 19(Suppl 2):195

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  21. Content type: Research article

    The murine discs large homolog 2 (DLG2; post synaptic density 93 (PSD-93); Chapsyn-110) is a member of the membrane-associated guanylate kinase (MAGUK) protein family involved in receptor assembly and associat...

    Authors: Shafaqat Ali, Alexander Hoven, Regine J. Dress, Heiner Schaal, Judith Alferink and Stefanie Scheu

    Citation: BMC Genomics 2018 19(Suppl 2):194

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  22. Content type: Research article

    SQUAMOSA PROMOTER BINDING PROTEIN (SBP)-box genes encode a family of plant-specific transcription factors (TFs) that play important roles in many growth and development processes including phase transition, le...

    Authors: Qin Zhou, Sisi Zhang, Feng Chen, Baojun Liu, Lan Wu, Fei Li, Jiaqi Zhang, Manzhu Bao and Guofeng Liu

    Citation: BMC Genomics 2018 19(Suppl 2):193

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  23. Content type: Research article

    Cryptocaryon irritans is an obligate parasitic ciliate protozoan that can infect various commercially important mariculture fish species and cause high lethality and economic loss. Current methods of controlling ...

    Authors: Ruanni Chen, Yong Mao, Jun Wang, Min Liu, Ying Qiao, Libing Zheng, Yongquan Su, Qiaozhen Ke and Weiqiang Zheng

    Citation: BMC Genomics 2018 19(Suppl 2):192

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