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  1. The snub-nosed monkey (Rhinopithecus roxellanae) is an endangered animal species mainly distributed in China and needs to be protected. Gut microbiome is an important determinant of animal health and population s...

    Authors: Gang Zhao, Mingpu Qi, Qiankun Wang, Changmin Hu, Xiang Li, Yingyu Chen, Jingyuan Yang, Huiliang Yu, Huanchun Chen and Aizhen Guo
    Citation: BMC Genomics 2023 24:62
  2. Lettuce (Lactuca sativa L.) cultivated in facilities display low vitamin C (L-ascorbic acid (AsA)) contents which require augmentation. Although UV-B irradiation increases the accumulation of AsA in crops, proces...

    Authors: Hua Zhou, Lei Yu, Shujuan Liu, Anfan Zhu, Yanfang Yang, Caihui Chen, Aihong Yang, Lipan Liu and Faxin Yu
    Citation: BMC Genomics 2023 24:61
  3. Starch are the main nutritional components of maize (Zea mays L.), and starch pasting properties are widely used as essential indicators for quality estimation. Based on the previous studies, various genes relate...

    Authors: Xinmei Guo, Zhaopeng Ge, Ming Wang, Meiai Zhao, Yuhe Pei and Xiyun Song
    Citation: BMC Genomics 2023 24:59
  4. Toona is a critical genus in the Meliaceae, and the plants of this group are an asset for both restorative and restorative purposes, the most flexible of which are Toona sinensis and Toona ciliata. To concentrate...

    Authors: Youli Li, Min Gu, Xuanzhe Liu, Jianna Lin, Huier Jiang, Huiyun Song, Xingcui Xiao and Wei Zhou
    Citation: BMC Genomics 2023 24:58
  5. To explore the causes of sudden unexpected death (SUD) and to search for high-risk people, whole exome sequencing (WES) was performed in families with SUDs. 

    Authors: Si-Jie Wei, Jin-Liang Du, Yue-Bing Wang, Peng-Fei Qu, Lin Ma, Zhong-Chun Sun, Xue Tang, Kai Liu, Yan-Mei Xi, Sheng-Jie Nie, Peng-Lin Jia, Wu Long, Yong-Qiang Qu, Yu-Hua Li and Pu-Ping Lei
    Citation: BMC Genomics 2023 24:57
  6. Toxicodendron vernicifluum, belonging to the family Anacardiaceae, is an important commercial arbor species, which can provide us with the raw lacquer, an excellent adhesive and painting material used to make lac...

    Authors: Dan Zong, Zhensheng Qiao, Jintao Zhou, Peiling Li, Peihua Gan, Meirong Ren and Chengzhong He
    Citation: BMC Genomics 2023 24:56
  7. Tripsacum dactyloides (2n = 4x = 72) and Zea perennis (2n = 4x = 40) are tertiary gene pools of Zea mays L. and exhibit many abiotic adaptations absent in modern maize, especially salt tolerance. A previously rep...

    Authors: Xiaofeng Li, Xingyu Wang, Qiangqiang Ma, Yunfeng Zhong, Yibo Zhang, Ping Zhang, Yingzheng Li, Ruyu He, Yang Zhou, Yang Li, Mingjun Cheng, Xu Yan, Yan Li, Jianmei He, Muhammad Zafar Iqbal, Tingzhao Rong…
    Citation: BMC Genomics 2023 24:55
  8. Melophagus ovinus is considered to be of great veterinary health significance. However, little is known about the information on genetic mechanisms of the specific biological characteristics and novel methods for...

    Authors: Qingxun Zhang, Qingsong Zhou, Shuyi Han, Ying Li, Ye Wang and Hongxuan He
    Citation: BMC Genomics 2023 24:54
  9. Arbuscular mycorrhizal (AM) fungi are arguably the most important symbionts of plants, offering a range of benefits to their hosts. However, the provisioning of these benefits does not appear to be uniform amo...

    Authors: Jelle van Creij, Ben Auxier, Jianyong An, Raúl Y. Wijfjes, Claudia Bergin, Anna Rosling, Ton Bisseling, Zhiyong Pan and Erik Limpens
    Citation: BMC Genomics 2023 24:53
  10. The procession of preadipocytes differentiation into mature adipocytes involves multiple cellular and signal transduction pathways. Recently. a seirces of noncoding RNAs (ncRNAs), including circular RNAs (circ...

    Authors: Du Yu, Li Xin, Xu Qing, Zhang Hao, Wang Yong, Zhu Jiangjiang and Lin Yaqiu
    Citation: BMC Genomics 2023 24:51
  11. The detection of selective traits in different populations can not only reveal current mechanisms of artificial selection for breeding, but also provide new insights into phenotypic variation in new varieties ...

    Authors: Huibin Shi, Taotao Li, Manchun Su, Huihui Wang, Qiao Li, Xia Lang and Youji Ma
    Citation: BMC Genomics 2023 24:50
  12. The circadian clock integrates endogenous and exogenous signals and regulates various physiological processes in plants. REVEILLE (RVE) proteins play critical roles in circadian clock system, especially CCA1 (...

    Authors: Zhe Liu, Xiaoxuan Zhu, Weijuan Liu, Kaijie Qi, Zhihua Xie, Shaoling Zhang, Juyou Wu and Peng Wang
    Citation: BMC Genomics 2023 24:49
  13. Terpenoids are important compounds associated with the pest and herbivore resistance mechanisms of plants; consequently, it is essential to identify and explore terpene synthase (TPS) genes in maize. In the prese...

    Authors: Yang Sun, Wenqing Xiao, Qing-nan Wang, Jing Wang, Xiang-dong Kong, Wen-hui Ma, Si-xian Liu, Ping Ren, Li-na Xu and Yong-Jun Zhang
    Citation: BMC Genomics 2023 24:46
  14. Paeonia veitchii Lynch, a well-known herb from the Qinghai-Tibet Plateau south of the Himalayas, can synthesize specific monoterpene glycosides (PMGs) with multiple pharmacological activities, and its rhizome ha...

    Authors: Shaoshan Zhang, Jun-zhang Qu-Bie, Ming-kang Feng, A-xiang Qu-Bie, Yanfei Huang, Zhi-feng Zhang, Xin-jia Yan and Yuan Liu
    Citation: BMC Genomics 2023 24:45
  15. Bovine mastitis accounts for significant economic losses to the dairy industry worldwide. Staphylococcus aureus is the most common causative agent of bovine mastitis. Investigating the prevalence of virulence fac...

    Authors: Ramamoorthy Sivakumar, Parameswaran Sree Pranav, Madhavi Annamanedi, S. Chandrapriya, Shrikrishna Isloor, Jeyaprakash Rajendhran and Nagendra R. Hegde
    Citation: BMC Genomics 2023 24:44
  16. Epigenomic profiling assays such as ChIP-seq have been widely used to map the genome-wide enrichment profiles of chromatin-associated proteins and posttranslational histone modifications. Sequencing depth is a...

    Authors: Joseph R Boyd, Cong Gao, Kathleen Quinn, Andrew Fritz, Janet Stein, Gary Stein, Karen Glass and Seth Frietze
    Citation: BMC Genomics 2023 24:43
  17. Sucrose phosphate synthase B (SPSB) gene encoding an important rate-limiting enzyme for sucrose synthesis in sugarcane is mainly expressed on leaves, where its alleles control sucrose synthesis. In this study, ge...

    Authors: Hongbo Liu, Xiuqin Lin, Xujuan Li, Ziliang Luo, Xin Lu, Qian You, Xiping Yang, Chaohua Xu, Xinlong Liu, Jiayong Liu, Caiwen Wu and Jianping Wang
    Citation: BMC Genomics 2023 24:42
  18. Somatic embryogenesis (SE) is one of the most promising processes for large-scale dissemination of elite varieties. However, for many plant species, optimizing SE protocols still relies on a trial and error ap...

    Authors: Rayan Awada, Maud Lepelley, David Breton, Aline Charpagne, Claudine Campa, Victoria Berry, Frédéric Georget, Jean-Christophe Breitler, Sophie Léran, Doâa Djerrab, Federico Martinez-Seidel, Patrick Descombes, Dominique Crouzillat, Benoît Bertrand and Hervé Etienne
    Citation: BMC Genomics 2023 24:41
  19. Gilts experiencing sustained hyperprolactinemia from d 90 to 109 of gestation showed an early onset of lactogenesis coupled with premature mammary involution. To better understand the molecular mechanisms unde...

    Authors: Marie-France Palin, Anouk Caron and Chantal Farmer
    Citation: BMC Genomics 2023 24:40
  20. Taro has a long history of being consumed and remains orphan and on the hand Nigeria farmers. The role of farmer-driven artificial selection is not negligible to fit landraces to a particular ecological condit...

    Authors: Tilahun Wondimu Fufa, Temesgen Matiwos Menamo, Wosene Gebreselassie Abtew, Charles Okechukwu Amadi and Happiness Ogba Oselebe
    Citation: BMC Genomics 2023 24:39
  21. Chromosomal painting in manatees has clarified questions about the rapid evolution of sirenians within the Paenungulata clade. Further cytogenetic studies in Afrotherian species may provide information about t...

    Authors: Flávia dos Santos Tavares, Willam Oliveira da Silva, Malcolm Andrew Ferguson-Smith, Alex Garcia Cavalleiro de Macedo Klautau, Jairo Moura Oliveira, Angélica Lúcia Figueiredo Rodrigues, Gabriel Melo-Santos, Julio Cesar Pieczarka, Cleusa Yoshiko Nagamachi and Renata Coelho Rodrigues Noronha
    Citation: BMC Genomics 2023 24:38
  22. Several studies showed genome-wide DNA methylation during Arabidopsis embryogenesis and germination. Although it has been known that the change of DNA methylation mainly occurs at CHH context mediated by small RN...

    Authors: Jaehoon Lee, Sang-Yoon Shin, Sang-Kyu Lee, Kyunghyuk Park, Haechan Gill, Youbong Hyun, Choongwon Jeong, Jong-Seong Jeon, Chanseok Shin and Yeonhee Choi
    Citation: BMC Genomics 2023 24:36
  23. Thousands of years of natural and artificial selection since the domestication of the horse has shaped the distinctive genomes of Chinese Mongolian horse populations. Consequently, genomic signatures of select...

    Authors: Haige Han, Imtiaz A. S. Randhawa, David E. MacHugh, Beatrice A. McGivney, Lisa M. Katz, Manglai Dugarjaviin and Emmeline W. Hill
    Citation: BMC Genomics 2023 24:35
  24. Pagiophloeus tsushimanus (Coleoptera: Curculionidae), an emerging forest pest exclusively infesting camphor trees, has recently caused severe ecological and economic damage in localized areas in China. Its popul...

    Authors: Shouyin Li, Hui Li, Cong Chen and Dejun Hao
    Citation: BMC Genomics 2023 24:34
  25. Grain yield is a complex and polygenic trait influenced by the photosynthetic source-sink relationship in wheat. The top three leaves, especially the flag leaf, are considered the major sources of photo-assimi...

    Authors: Binxue Kong, Jingfu Ma, Peipei Zhang, Tao Chen, Yuan Liu, Zhuo Che, Fahimeh Shahinnia and Delong Yang
    Citation: BMC Genomics 2023 24:33
  26. ‘Whangkeumbae’ (Pyrus pyrifolia) is a typical climacteric fruit variety of sand pear with excellent taste. However, the rapid postharvest ethylene production limits the shelf life of ‘Whangkeumbae’ fruit. AP2/ERF...

    Authors: Yue Xu, Xiaona Li, Xiong Yang, Misganaw Wassie and Haiyan Shi
    Citation: BMC Genomics 2023 24:32
  27. The quality of poultry eggshells is closely related to the profitability of egg production. Eggshell speckles reflect an important quality trait that influences egg appearance and customer preference. However,...

    Authors: Xue Cheng, Xinghua Li, Yuchen Liu, Ying Ma, Ruiqi Zhang, Yalan Zhang, Cuidie Fan, Lujiang Qu and Zhonghua Ning
    Citation: BMC Genomics 2023 24:31
  28. The genus Zingiber of the Zingiberaceae is distributed in tropical, subtropical, and in Far East Asia. This genus contains about 100–150 species, with many species valued as important agricultural, medicinal and ...

    Authors: Dongzhu Jiang, Xiaodong Cai, Min Gong, Maoqin Xia, Haitao Xing, Shanshan Dong, Shuming Tian, Jialin Li, Junyao Lin, Yiqing Liu and Hong-Lei Li
    Citation: BMC Genomics 2023 24:30
  29. The methodology described in previous literature for Monkeypox virus (MPXV) sequencing shows low efficiency when using metagenomic approaches. The aim of the present study was to evaluate a new fine-tuned method ...

    Authors: Pablo Aja-Macaya, Soraya Rumbo-Feal, Margarita Poza, Angelina Cañizares, Juan A. Vallejo and Germán Bou
    Citation: BMC Genomics 2023 24:29
  30. Aglaonema commutatum ‘Red Valentine’, as a foliage ornamental plant, is widely used for interior and exterior decoration because of its easy cultivation and management. However, reduced proportion of red foliage ...

    Authors: Ji Li, Kunlin Wu, Lin Li, Guohua Ma, Lin Fang and Songjun Zeng
    Citation: BMC Genomics 2023 24:28
  31. As an economically important crop, tea is strongly nitrogen (N)-dependent. However, the physiological and molecular mechanisms underlying the response of N deficiency in tea are not fully understood. Tea culti...

    Authors: Zheng-He Lin, Chang-Song Chen, Shui-Qing Zhao, Yuan Liu, Qiu-Sheng Zhong, Qi-Chun Ruan, Zhi-Hui Chen, Xiao-Mei You, Rui-Yang Shan, Xin-Lei Li and Ya-Zhen Zhang
    Citation: BMC Genomics 2023 24:27
  32. Mycobacterial interspersed repetitive unit-variable number tandem repeat (MIRU-VNTR) is a frequently used typing method for identifying the Beijing genotype of Mycobacterium tuberculosis (Mtb), which is easily tr...

    Authors: Fan Su, Lei Cao, Xia Ren, Jian Hu, Grace Tavengana, Huan Wu, Yumei Zhou, Yuhan Fu, Mingfei Jiang and Yufeng Wen
    Citation: BMC Genomics 2023 24:26
  33. Apostichopus japonicus is an economically important species in the global aquaculture industry. Russian A. japonicus, mainly harvested in the Vladivostok region, exhibits significant phenotypic differentiation, i...

    Authors: Chao Guo, Xianglei Zhang, Yuanxin Li, Jiahui Xie, Pingping Gao, Pengfei Hao, Lingshu Han, Jinyuan Zhang, Wenpei Wang, Peng Liu, Jun Ding and Yaqing Chang
    Citation: BMC Genomics 2023 24:25
  34. Geese exhibit relatively low reproductive performance, and follicular atresia is an important factor that restricts the egg production of geese. Systematic analysis of the regulation of follicle atresia in gee...

    Authors: Wanli Yang, Xingyong Chen, Zhengquan Liu, Yutong Zhao, Yufei Chen and Zhaoyu Geng
    Citation: BMC Genomics 2023 24:24
  35. It is inevitable to change the function or expression of genes during the environmental adaption of species. Both the giant panda (Ailuropoda melanoleuca) and red panda (Ailurus fulgens) belong to Carnivora and h...

    Authors: Jinnan Ma, Liang Zhang, Fujun Shen, Yang Geng, Yan Huang, Honglin Wu, Zhenxin Fan, Rong Hou, Zhaobin Song, Bisong Yue and Xiuyue Zhang
    Citation: BMC Genomics 2023 24:23
  36. The fall armyworm (FAW), Spodoptera frugiperda; J.E. Smith (Lepidoptera: Noctuidae), is now an economically important pest that causes huge losses to maize productivity in sub-Saharan Africa. Variations in sub-po...

    Authors: Geresemu Omuut, Happyness G. Mollel, Dalton Kanyesigye, Félicien Akohoue, Stella Adumo Aropet, Henry Wagaba and Michael H. Otim
    Citation: BMC Genomics 2023 24:22
  37. Salt-alkali stress represents one of the most stressful events with deleterious consequences for plant growth and crop productivity. Despite studies focusing on the effects of salt-alkali stress on morphology ...

    Authors: Xiaoning Ren, Jiahui Fan, Xin Li, Yu Shan, Lianju Ma, Yueying Li and Xuemei Li
    Citation: BMC Genomics 2023 24:21

    The Correction to this article has been published in BMC Genomics 2023 24:63

  38. Portal hypertension (PHT) is a major cause of liver cirrhosis. The formation of portosystemic collateral vessels and splanchnic vasodilation contribute to the development of hyperdynamic circulation, which in ...

    Authors: Guangbo Wu, Min Chen, Qiang Fan, Hongjie Li, Zhifeng Zhao, Chihao Zhang and Meng Luo
    Citation: BMC Genomics 2023 24:20
  39. Adaptations by arthropod pests to host plant defenses of crops determine their impacts on agricultural production. The larval host range of western corn rootworm, Diabrotica virgifera virgifera (Coleoptera: Chrys...

    Authors: Brad S. Coates, Kimberly K. O. Walden, Dimpal Lata, Neetha Nanoth Vellichirammal, Robert F. Mitchell, Martin N. Andersson, Rachel McKay, Marcé D. Lorenzen, Nathaniel Grubbs, Yu-Hui Wang, Jinlong Han, Jing Li Xuan, Peter Willadsen, Huichun Wang, B. Wade French, Raman Bansal…
    Citation: BMC Genomics 2023 24:19
  40. The importance of uridine 5′-diphosphate glucose (UDP-G) synthesis and degradation on carbon (C) partitioning has been indicated in several studies of plant systems, whereby the kinetic properties and abundanc...

    Authors: Patrick J. Mason, Nam V. Hoang, Frederik C. Botha, Agnelo Furtado, Annelie Marquardt and Robert J. Henry
    Citation: BMC Genomics 2023 24:18
  41. As an important regulator of autoimmune responses and inflammation, S100A9 may serve as a therapeutic target in inflammatory diseases. However, the role of S100A9 in Clostridium perfringens type C infectious diar...

    Authors: Jie Li, Kaihui Xie, Jiaojiao Yang, Juanli Zhang, Qiaoli Yang, Pengfei Wang, Shuangbao Gun and Xiaoyu Huang
    Citation: BMC Genomics 2023 24:16
  42. Gossypium barbadense L. Pima cotton is known for its resistance to Fusarium wilt and for producing fibers of superior quality highly prized in the textile market. We report a high-quality genome assembly and ann...

    Authors: Ricardo A. Chávez Montes, Mauricio Ulloa, Tammy Biniashvili, Arik Zackay, Nir Kfir, Damar Lopez-Arredondo and Luis Herrera-Estrella
    Citation: BMC Genomics 2023 24:11

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