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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Restricted and Repetitive Behaviors (RRB), one of the core symptom categories for Autism Spectrum Disorders (ASD), comprises heterogeneous groups of behaviors. Previous research indicates that there are two or...

    Authors: Yu Tao, Hui Gao, Benjamin Ackerman, Wei Guo, David Saffen and Yin Yao Shugart
    Citation: BMC Genomics 2016 17:163
    Content type: Research article Published on:

  2. In physoclist fishes filling of the swimbladder requires acid secretion of gas gland cells to switch on the Root effect and subsequent countercurrent concentration of the initial gas partial pressure increase ...

    Authors: Gabriel Schneebauer, Victoria Drechsel, Ron Dirks, Klaus Faserl, Bettina Sarg and Bernd Pelster
    Citation: BMC Genomics 2021 22:866
    Content type: Research Published on:

  3. Rootstocks can improve the chilling tolerance of grafted cucumbers, but their effectiveness varies. Rootstocks with strong de-blooming capacity may result in lower chilling tolerance of grafted cucumbers compa...

    Authors: Qiang Ma, Chenxu Niu, Chao Wang, Chunhua Chen, Yan Li and Min Wei
    Citation: BMC Genomics 2023 24:250
    Content type: Research Published on:

  4. Members of the MtN3/saliva/SWEET gene family are present in various organisms and are highly conserved. Their precise biochemical functions remain unclear, especially in Chinese cabbage. Based on the whole gen...

    Authors: Liming Miao, Yanxia Lv, Lijun Kong, Qizhen Chen, Chaoquan Chen, Jia Li, Fanhuan Zeng, Shenyun Wang, Jianbin Li, Li Huang, Jiashu Cao and Xiaolin Yu
    Citation: BMC Genomics 2018 19:174
    Content type: Research article Published on:

  5. Biological mechanisms affecting gametogenesis, embryo development and postnatal viability have the potential to alter Mendelian inheritance expectations resulting in observable transmission ratio distortion (T...

    Authors: Samir Id-Lahoucine, Joaquim Casellas, Aroa Suárez-Vega, Pablo A. S. Fonseca, Flavio S. Schenkel, Mehdi Sargolzaei and Angela Cánovas
    Citation: BMC Genomics 2023 24:383
    Content type: Research Published on:

  6. Aspartic proteases (APs) are a large family of proteolytic enzymes found in almost all organisms. In plants, they are involved in many biological processes, such as senescence, stress responses, programmed cel...

    Authors: Rongrong Guo, Xiaozhao Xu, Bassett Carole, Xiaoqin Li, Min Gao, Yi Zheng and Xiping Wang
    Citation: BMC Genomics 2013 14:554
    Content type: Research article Published on:

  7. Rhesus macaques are the most widely utilized nonhuman primate model in biomedical research. Previous efforts have validated fewer than 900 single nucleotide polymorphisms (SNPs) in this species, which limits o...

    Authors: Gloria L Fawcett, Muthuswamy Raveendran, David Rio Deiros, David Chen, Fuli Yu, Ronald Alan Harris, Yanru Ren, Donna M Muzny, Jeffrey G Reid, David A Wheeler, Kimberly C Worley, Steven E Shelton, Ned H Kalin, Aleksandar Milosavljevic, Richard Gibbs and Jeffrey Rogers
    Citation: BMC Genomics 2011 12:311
    Content type: Research article Published on:

  8. Phyto-remedies for diabetic control are popular among patients with Type II Diabetes mellitus (DM), in addition to other diabetic control measures. A number of plant species are known to possess diabetic contr...

    Authors: Ramasamy S Annadurai, Vasanthan Jayakumar, Raja C Mugasimangalam, Mohan AVSK Katta, Sanchita Anand, Sreeja Gopinathan, Santosh Prasad Sarma, Sunjay Jude Fernandes, Nandita Mullapudi, S Murugesan and Sudha Narayana Rao
    Citation: BMC Genomics 2012 13:663
    Content type: Research article Published on:

  9. Group B streptococcus (GBS) capsular polysaccharide is one of the major virulence factors underlying invasive GBS disease and a component of forthcoming vaccines. Serotype classification of GBS is based on the...

    Authors: Georgia Kapatai, Darshana Patel, Androulla Efstratiou and Victoria J. Chalker
    Citation: BMC Genomics 2017 18:429
    Content type: Methodology article Published on:

  11. Biocontrol is a key technology for the control of pest species. Microctonus parasitoid wasps (Hymenoptera: Braconidae) have been released in Aotearoa New Zealand as biocontrol agents, targeting three different pe...

    Authors: Sarah N. Inwood, John Skelly, Joseph G. Guhlin, Thomas W.R. Harrop, Stephen L. Goldson and Peter K. Dearden
    Citation: BMC Genomics 2023 24:440
    Content type: Research Published on:

  12. Genetic analysis of Escherichia coli O157:H7 strains has shown divergence into two distinct lineages, lineages I and II, that appear to have distinct ecological characteristics, with lineage I strains more common...

    Authors: Yongxiang Zhang, Chad Laing, Marina Steele, Kim Ziebell, Roger Johnson, Andrew K Benson, Eduardo Taboada and Victor PJ Gannon
    Citation: BMC Genomics 2007 8:121
    Content type: Research article Published on:

  13. Structural variants and tandem repeats are relevant sources of genomic variation that are not routinely analyzed in genome wide association studies mainly due to challenging identification and genotyping. Here...

    Authors: Iulia Blaj, Jens Tetens, Jörn Bennewitz, Georg Thaller and Clemens Falker-Gieske
    Citation: BMC Genomics 2022 23:631
    Content type: Research Published on:

  14. Numerous protocols for viral enrichment and genome amplification have been created. However, the direct identification of viral genomes from clinical specimens using next-generation sequencing (NGS) still has ...

    Authors: Dan Zhang, Xiuyu Lou, Hao Yan, Junhang Pan, Haiyan Mao, Hongfeng Tang, Yan Shu, Yun Zhao, Lei Liu, Junping Li, Jiang Chen, Yanjun Zhang and Xuejun Ma
    Citation: BMC Genomics 2018 19:773
    Content type: Research article Published on:

  15. Drought-tolerance ensures a crop to maintain life activities and protect cell from damages under dehydration. It refers to diverse mechanisms temporally activated when the crop adapts to drought. However, know...

    Authors: Hui Xia, Xiaosong Ma, Kai Xu, Lei Wang, Hongyan Liu, Liang Chen and Lijun Luo
    Citation: BMC Genomics 2020 21:776
    Content type: Research article Published on:

  17. Diversity Generating Retroelements (DGRs) are genetic cassettes that can introduce tremendous diversity into a short, defined region of the genome. They achieve hypermutation through replacement of the variabl...

    Authors: Thomas Schillinger, Mohamed Lisfi, Jingyun Chi, John Cullum and Nora Zingler
    Citation: BMC Genomics 2012 13:430
    Content type: Research article Published on:

  18. The extensive use of antibiotics in medicine has raised serious concerns about biosafety. However, the effect of antibiotic application on the adaptive evolution of microorganisms, especially to probiotic bact...

    Authors: Jicheng Wang, Xiao Dong, Yuyu Shao, Huiling Guo, Lin Pan, Wenyan Hui, Lai-Yu Kwok, Heping Zhang and Wenyi Zhang
    Citation: BMC Genomics 2017 18:320
    Content type: Research article Published on:

  19. The genus Burkholderia consists of species that occupy remarkably diverse ecological niches. Its best known members are important pathogens, B. mallei and B. pseudomallei, which cause glanders and melioidosis, re...

    Authors: Olga O. Bochkareva, Elena V. Moroz, Iakov I. Davydov and Mikhail S. Gelfand
    Citation: BMC Genomics 2018 19:965
    Content type: Research article Published on:

  20. MicroRNAs (miRNAs) are key regulators of biological processes. To define miRNA function in the eye, it is essential to determine a high-resolution profile of their spatial and temporal distribution.

    Authors: Marianthi Karali, Ivana Peluso, Vincenzo A Gennarino, Marchesa Bilio, Roberta Verde, Giampiero Lago, Pascal Dollé and Sandro Banfi
    Citation: BMC Genomics 2010 11:715
    Content type: Research article Published on:

  21. High-throughput sequencing data are dramatically increasing in volume. Thus, there is urgent need for efficient tools to perform fast and integrative analysis of multiple data types. Enriched heatmap is a spec...

    Authors: Zuguang Gu, Roland Eils, Matthias Schlesner and Naveed Ishaque
    Citation: BMC Genomics 2018 19:234
    Content type: Software Published on:

  22. Like other structural variants, transposable element insertions can be highly polymorphic across individuals. Their functional impact, however, remains poorly understood. Current genome-wide approaches for gen...

    Authors: Alexandre Kuhn, Yao Min Ong, Stephen R. Quake and William F. Burkholder
    Citation: BMC Genomics 2015 16:508
    Content type: Methodology article Published on:

  23. Despite a multifactorial approach being taken for the evaluation of bull semen quality in many animal breeding centres worldwide, reliable prediction of bull fertility is still a challenge. Recently, attention...

    Authors: Miriama Štiavnická, Aurélie Chaulot-Talmon, Jean-Philippe Perrier, Petr Hošek, David A. Kenny, Patrick Lonergan, Hélène Kiefer and Sean Fair
    Citation: BMC Genomics 2022 23:379
    Content type: Research Published on:

  24. Swine streptococcosis has caused great economic loss in the swine industry, and the major pathogen responsible for this disease is Streptococcus Suis serotype 2 (SS2). Disease resistance breeding is a fundamental...

    Authors: Zhe Ma, Haodan Zhu, Yiqi Su, Yu Meng, Huixing Lin, Kongwang He and Hongjie Fan
    Citation: BMC Genomics 2018 19:907
    Content type: Research article Published on:

  25. Primula species are important early spring garden plants with a centre of diversity and speciation in the East Himalaya-Hengduan Mountains in Western China. Studies on population genetics, speciation and phylogen...

    Authors: Lu Zhang, Hai-Fei Yan, Wei Wu, Hui Yu and Xue-Jun Ge
    Citation: BMC Genomics 2013 14:329
    Content type: Research article Published on:

  27. Macrophomina phaseolina is a fungal plant pathogen with a broad host range, but one genotype was shown to exhibit host preference/specificity on strawberry. This pathogen lacked a high-quality genome assembly and...

    Authors: Alyssa K. Burkhardt, Kevin L. Childs, Jie Wang, Marina L. Ramon and Frank N. Martin
    Citation: BMC Genomics 2019 20:802
    Content type: Research article Published on:

  28. The Avrk1 and Avra10 avirulence (AVR) genes encode effectors that increase the pathogenicity of the fungus Blumeria graminis f.sp. hordei (Bgh), the powdery mildew pathogen, in susceptible barley plants. In resis...

    Authors: Joelle Amselem, Marielle Vigouroux, Simone Oberhaensli, James K. M. Brown, Laurence V. Bindschedler, Pari Skamnioti, Thomas Wicker, Pietro D. Spanu, Hadi Quesneville and Soledad Sacristán
    Citation: BMC Genomics 2015 16:917
    Content type: Research article Published on:

  29. Endoparasitoid wasps are important natural enemies of the widely distributed aphid pests and are mainly used as biological control agents. However, despite the increased interest on aphid interaction networks,...

    Authors: Dominique Colinet, Caroline Anselme, Emeline Deleury, Donato Mancini, Julie Poulain, Carole Azéma-Dossat, Maya Belghazi, Sophie Tares, Francesco Pennacchio, Marylène Poirié and Jean-Luc Gatti
    Citation: BMC Genomics 2014 15:342
    Content type: Research article Published on:

  30. Rare cell subtypes can profoundly impact the course of human health and disease, yet their presence within a sample is often missed with bulk molecular analysis. Single-cell analysis tools such as FACS, FISH-F...

    Authors: Maurizio Pellegrino, Adam Sciambi, Jamie L. Yates, Joshua D. Mast, Charles Silver and Dennis J. Eastburn
    Citation: BMC Genomics 2016 17:361
    Content type: Methodology article Published on:

  31. Ramularia collo-cygni is a newly important, foliar fungal pathogen of barley that causes the disease Ramularia leaf spot. The fungus exhibits a prolonged endophytic growth stage before...

    Authors: Graham R. D. McGrann, Ambrose Andongabo, Elisabet Sjökvist, Urmi Trivedi, Francois Dussart, Maciej Kaczmarek, Ashleigh Mackenzie, James M. Fountaine, Jeanette M. G. Taylor, Linda J. Paterson, Kalina Gorniak, Fiona Burnett, Kostya Kanyuka, Kim E. Hammond-Kosack, Jason J. Rudd, Mark Blaxter…
    Citation: BMC Genomics 2016 17:584
    Content type: Research article Published on:

  32. New chemotherapeutic agents against Schistosoma mansoni, an etiological agent of human schistosomiasis, are a priority due to the emerging drug resistance and the inability of current drug treatments to prevent r...

    Authors: David H Bos, Chris Mayfield and Dennis J Minchella
    Citation: BMC Genomics 2009 10:488
    Content type: Research article Published on:

  33. Cold storage is used to inhibit peach fruit ripening during shipment to distant markets. However, this cold storage can negatively affect the quality of the fruit when it is ripened, resulting in disorders suc...

    Authors: Paula Vizoso, Lee A Meisel, Andrés Tittarelli, Mariano Latorre, Juan Saba, Rodrigo Caroca, Jonathan Maldonado, Veronica Cambiazo, Reinaldo Campos-Vargas, Mauricio Gonzalez, Ariel Orellana and Herman Silva
    Citation: BMC Genomics 2009 10:423
    Content type: Research article Published on:

  34. The change from juvenile to mature phase in woody plants is often accompanied by a gradual loss of rooting ability, as well as by reduced microRNA (miR) 156 and increased miR172 expression.

    Authors: Aviv Levy, David Szwerdszarf, Mohamad Abu-Abied, Inna Mordehaev, Yossi Yaniv, Joseph Riov, Tzahi Arazi and Einat Sadot
    Citation: BMC Genomics 2014 15:524
    Content type: Research article Published on:

  35. Sugarcane is the source of sugar in all tropical and subtropical countries and is becoming increasingly important for bio-based fuels. However, its large (10 Gb), polyploid, complex genome has hindered genome ...

    Authors: Nathalia de Setta, Cláudia Barros Monteiro-Vitorello, Cushla Jane Metcalfe, Guilherme Marcelo Queiroga Cruz, Luiz Eduardo Del Bem, Renato Vicentini, Fábio Tebaldi Silveira Nogueira, Roberta Alvares Campos, Sideny Lima Nunes, Paula Cristina Gasperazzo Turrini, Andreia Prata Vieira, Edgar Andrés Ochoa Cruz, Tatiana Caroline Silveira Corrêa, Carlos Takeshi Hotta, Alessandro de Mello Varani, Sonia Vautrin…
    Citation: BMC Genomics 2014 15:540
    Content type: Research article Published on:

  36. Miniature inverted repeat transposable element (MITE) is one type of transposable element (TE), which is largely found in eukaryotic genomes and involved in a wide variety of biological events. However, only f...

    Authors: Hai-Tao Dong, Lu Zhang, Kang-Le Zheng, Hai-Gen Yao, Jack Chen, Feng-Chi Yu, Xiao-Xing Yu, Bi-Zeng Mao, Dong Zhao, Jian Yao and De-Bao Li
    Citation: BMC Genomics 2012 13:135
    Content type: Research article Published on:

  37. Japanese gentians (Gentiana triflora and Gentiana scabra) are amongst the most popular floricultural plants in Japan. However, genomic resources for Japanese gentians have not yet been developed, mainly because o...

    Authors: Takashi Nakatsuka, Eri Yamada, Misa Saito, Takashi Hikage, Yuka Ushiku and Masahiro Nishihara
    Citation: BMC Genomics 2012 13:672
    Content type: Research article Published on:

  38. Among transcriptomic studies, those comparing species or populations can increase our understanding of the impact of the evolutionary forces on the differentiation of populations. A particular situation is the...

    Authors: Magali SanCristobal, Florian Rohart, Christine Lascor, Marcel Bouffaud, Lidwine Trouilh, Pascal G.P. Martin, Yannick Lippi, Thierry Tribout, Thomas Faraut, Marie-José Mercat, Denis Milan and Laurence Liaubet
    Citation: BMC Genomics 2015 16:1055
    Content type: Research article Published on:

  39. Elucidating the candidate genes and key metabolites responsible for pulp and peel coloration is essential for breeding pitaya fruit with new and improved appeal and high nutritional value. Here, we used transc...

    Authors: Zhaoxi Zhou, Hongmao Gao, Jianhong Ming, Zheli Ding, Xing’e Lin and Rulin Zhan
    Citation: BMC Genomics 2020 21:734
    Content type: Research article Published on:

    The Correspondence to this article has been published in BMC Genomics 2022 23:739

    The Correspondence to this article has been published in BMC Genomics 2022 23:740

  40. Egg production is one of the most important economic traits in the poultry industry. The hypothalamic-pituitary–gonadal (HPG) axis plays an essential role in regulating reproductive activities. However, the ke...

    Authors: Xiping Yan, Hehe Liu, Jiwei Hu, Xingfa Han, Jingjing Qi, Qingyuan Ouyang, Bo Hu, Hua He, Liang Li, Jiwen Wang and Xianyin Zeng
    Citation: BMC Genomics 2022 23:281
    Content type: Research Published on:

  41. Repetitive extragenic palindromic elements (REPs) constitute a group of bacterial genomic repeats known for their high abundance and several roles in host cells´ physiology. We analyzed the phylogenetic distri...

    Authors: Jaroslav Nunvar, Irena Licha and Bohdan Schneider
    Citation: BMC Genomics 2013 14:385
    Content type: Research article Published on:

  42. Perkinsus marinus, a protozoan parasite of the eastern oyster Crassostrea virginica, has devastated natural and farmed oyster populations along the Atlantic and Gulf coasts of the United States. It is classified ...

    Authors: Sandeep J Joseph, José A Fernández-Robledo, Malcolm J Gardner, Najib M El-Sayed, Chih-Horng Kuo, Eric J Schott, Haiming Wang, Jessica C Kissinger and Gerardo R Vasta
    Citation: BMC Genomics 2010 11:228
    Content type: Research article Published on:

  43. Insect Cytochrome P450 monooxygenase (CYPs or P450s) plays an important role in detoxifying insecticides, causing insect populations to develop resistance. However, the molecular functions of P450 gene family in

    Authors: Chun Fu, Ding Yang, Wen Cong Long, XiMeng Xiao, HanYu Wang, Na Jiang and YaoJun Yang
    Citation: BMC Genomics 2024 25:453
    Content type: Research Published on:

  44. Host defense peptides are a critical component of the innate immune system. Human alpha- and beta-defensin genes are subject to copy number variation (CNV) and historically the organization of mouse alpha-defe...

    Authors: Clara Amid, Linda M Rehaume, Kelly L Brown, James GR Gilbert, Gordon Dougan, Robert EW Hancock and Jennifer L Harrow
    Citation: BMC Genomics 2009 10:606
    Content type: Research article Published on:

  45. Polycomb group (PcG) proteins maintain expression pattern of genes set early during development. Although originally isolated as regulators of homeotic genes, PcG members play a key role in epigenetic mechanism t...

    Authors: Ramamoorthy Senthilkumar and Rakesh K Mishra
    Citation: BMC Genomics 2009 10:549
    Content type: Research article Published on:

  46. The main function of hemoglobin (Hb) is to transport oxygen in the circulation. It is among the most highly studied proteins due to its roles in physiology and disease, and most of our understanding derives fr...

    Authors: Sara Zaldívar-López, Jennie L. Rowell, Elise M. Fiala, Isain Zapata, C. Guillermo Couto and Carlos E. Alvarez
    Citation: BMC Genomics 2017 18:141
    Content type: Research article Published on:

  47. Average daily gain (ADG) is an important trait that contributes to the production efficiency and economic benefits in the beef cattle industry. The molecular mechanisms of ADG have not yet been fully explored ...

    Authors: Lingyang Xu, Liu Yang, Lei Wang, Bo Zhu, Yan Chen, Huijiang Gao, Xue Gao, Lupei Zhang, George E. Liu and Junya Li
    Citation: BMC Genomics 2019 20:31
    Content type: Research article Published on:

  48. Aggressive behavior is an ancient and conserved trait, habitual for most animals in order to eat, protect themselves, compete for mating and defend their territories. Genetic factors have been shown to play an...

    Authors: Paulina G. Eusebi, Natalia Sevane, Thomas O’Rourke, Manuel Pizarro, Cedric Boeckx and Susana Dunner
    Citation: BMC Genomics 2021 22:245
    Content type: Research article Published on:

  49. Cyanobacteria maintain extensive repertoires of regulatory genes that are vital for adaptation to environmental stress. Some cyanobacterial genomes have been noted to encode diversity-generating retroelements ...

    Authors: Alec Vallota-Eastman, Eleanor C. Arrington, Siobhan Meeken, Simon Roux, Krishna Dasari, Sydney Rosen, Jeff F. Miller, David L. Valentine and Blair G. Paul
    Citation: BMC Genomics 2020 21:664
    Content type: Research article Published on:

  50. Long non-coding RNAs (LncRNAs) are part of genes, which are not translated into proteins and play a vital role in plant growth and development. Nevertheless, the presence of LncRNAs and how they functions in L...

    Authors: Haron Salih, Wenfang Gong, Shoupu He, Wang Xia, Magwanga Richard Odongo and Xiongming Du
    Citation: BMC Genomics 2019 20:661
    Content type: Research article Published on:

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BMC Genomics

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