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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Planarians reliably regenerate all body parts after injury, including a fully functional head and central nervous system. But until now, the expression dynamics and functional role of miRNAs and other small RN...

    Authors: Zhonghong Cao, David Rosenkranz, Suge Wu, Hongjin Liu, Qiuxiang Pang, Xiufang Zhang, Baohua Liu and Bosheng Zhao
    Citation: BMC Genomics 2020 21:876
    Content type: Research article Published on:

  2. In natural environments, bacteria must frequently cope with extremely scarce nutrients. Most studies focus on bacterial growth in nutrient replete conditions, while less is known about the stationary phase. He...

    Authors: Jochen Bathke, Anne Konzer, Bernhard Remes, Matthew McIntosh and Gabriele Klug
    Citation: BMC Genomics 2019 20:358
    Content type: Research article Published on:

  3. The uneven distribution of recombination across the length of chromosomes results in inaccurate estimates of genetic to physical distances. In wheat (Triticum aestivum L.) chromosome 3B, it has been estimated tha...

    Authors: Ajay Kumar, Filippo M Bassi, Etienne Paux, Omar Al-Azzam, Monika Michalak de Jimenez, Anne M Denton, Yong Q Gu, Eric Huttner, Andrzej Kilian, Sachin Kumar, Aakash Goyal, Muhammad J Iqbal, Vijay K Tiwari, Munevver Dogramaci, Harindra S Balyan, Harcharan S Dhaliwal…
    Citation: BMC Genomics 2012 13:339
    Content type: Research article Published on:

  4. Acinetobacter baumannii is an important nosocomial pathogen that poses a serious health threat to immune-compromised patients. Due to its rapid ability to develop multidrug resistance (MDR), A. baumannii has incr...

    Authors: Fei Liu, Yuying Zhu, Yong Yi, Na Lu, Baoli Zhu and Yongfei Hu
    Citation: BMC Genomics 2014 15:1163
    Content type: Research article Published on:

  6. The banana (Musa sp., AAA) genome is constantly increasing due to high-frequency of somaclonal variations. Due to its large diversity, a conventional numerical and morphological based taxonomic identification of ...

    Authors: S. Dhivya, S. Ashutosh, I. Gowtham, V. Baskar, A. Baala Harini, S. Mukunthakumar and R. Sathishkumar
    Citation: BMC Genomics 2020 21:659
    Content type: Research article Published on:

  7. Pan-cancer studies have disclosed many commonalities and differences in mutations, copy number variations, and gene expression alterations among cancers. Some of these features are significantly associated wit...

    Authors: Po-Wen Wang, Yi-Hsun Su, Po-Hao Chou, Ming-Yueh Huang and Ting-Wen Chen
    Citation: BMC Genomics 2022 22(Suppl 5):918
    Content type: Research Published on:

    This article is part of a Supplement: Volume 22 Supplement 5

  8. Aphid (Macrosiphoniella sanbourni) stress drastically influences the yield and quality of chrysanthemum, and grafting has been widely used to improve tolerance to biotic and abiotic stresses. However, the effect ...

    Authors: Xue-ying Zhang, Xian-zhi Sun, Sheng Zhang, Jing-hui Yang, Fang-fang Liu and Jie Fan
    Citation: BMC Genomics 2019 20:776
    Content type: Research article Published on:

  9. Horseradish peroxidases (HRPs) from Armoracia rusticana have long been utilized as reporters in various diagnostic assays and histochemical stainings. Regardless of their increasing importance in the field of lif...

    Authors: Laura Näätsaari, Florian W Krainer, Michael Schubert, Anton Glieder and Gerhard G Thallinger
    Citation: BMC Genomics 2014 15:227
    Content type: Research article Published on:

  10. The identification of genetic variation underlying desired phenotypes is one of the main challenges of current livestock genetic research. High-throughput transcriptome sequencing (RNA-Seq) offers new opportun...

    Authors: Aroa Suárez-Vega, Beatriz Gutiérrez-Gil, Christophe Klopp, Gwenola Tosser-Klopp and Juan José Arranz
    Citation: BMC Genomics 2017 18:170
    Content type: Research article Published on:

  11. Btau_4.0 and UMD3.1 are two distinct cattle reference genome assemblies. In our previous study using the low density BovineSNP50 array, we reported a copy number variation (CNV) analysis on Btau_4.0 with 521 a...

    Authors: Yali Hou, Derek M Bickhart, Miranda L Hvinden, Congjun Li, Jiuzhou Song, Didier A Boichard, Sébastien Fritz, André Eggen, Sue DeNise, George R Wiggans, Tad S Sonstegard, Curtis P Van Tassell and George E Liu
    Citation: BMC Genomics 2012 13:376
    Content type: Research article Published on:

  12. Gene expression is regulated by transcription factors, cofactors, and epigenetic mechanisms. Coexpressed genes indicate similar functional categories and gene networks. Detecting gene-gene coexpression is impo...

    Authors: Heng Xu, Ying Hu, Xinyu Zhang, Bradley E. Aouizerat, Chunhua Yan and Ke Xu
    Citation: BMC Genomics 2022 23:35
    Content type: Research Published on:

  13. Mammal macrophages (MΦ) display a wide range of functions which contribute to surveying and maintaining tissue integrity. One such function is phagocytosis, a process known to be subverted by parasites like Leish...

    Authors: José Osorio y Fortéa, Emilie de La Llave, Béatrice Regnault, Jean-Yves Coppée, Geneviève Milon, Thierry Lang and Eric Prina
    Citation: BMC Genomics 2009 10:119
    Content type: Research article Published on:

  14. The blood transcriptome can reflect both systemic exposures and pathological changes in other organs of the body because immune cells recirculate through the blood, lymphoid tissues, and affected sites. In hum...

    Authors: Jeanine S. Morey, Marion G. Neely, Denise Lunardi, Paul E. Anderson, Lori H. Schwacke, Michelle Campbell and Frances M. Van Dolah
    Citation: BMC Genomics 2016 17:720
    Content type: Research article Published on:

  15. Teleost fish have seven paralogous clusters of Hox genes stemming from two complete genome duplications early in vertebrate evolution, and an additional genome duplication during the evolution of ray-finned fi...

    Authors: Simone Hoegg, Jeffrey L Boore, Jennifer V Kuehl and Axel Meyer
    Citation: BMC Genomics 2007 8:317
    Content type: Research article Published on:

  16. The clustering of genes in a pathway and the co-location of functionally related genes is widely recognized in prokaryotes. We used these characteristics to predict the metabolic involvement for a Transcriptio...

    Authors: Ricardo Martí-Arbona, Fangping Mu, Kristy L Nowak-Lovato, Melinda S Wren, Clifford J Unkefer and Pat J Unkefer
    Citation: BMC Genomics 2014 15:1142
    Content type: Research article Published on:

  17. Donkey meat has low fat and high protein contents and is rich in various unsaturated fatty acids and trace elements that are beneficial to human digestion and absorption. IMF (intramuscular fat), also known as...

    Authors: Wufeng Li, Lixia Qiu, Jiawei Guan, Yutong Sun, Jingwei Zhao and Min Du
    Citation: BMC Genomics 2022 23:644
    Content type: Research Published on:

  18. Postharvest seed coat darkening in pinto bean is an undesirable trait resulting in a loss in the economic value of the crop. The extent of darkening varies between the bean cultivars and their storage conditions.

    Authors: Kishor Duwadi, Ryan S. Austin, Hemanta R. Mainali, Kirstin Bett, Frédéric Marsolais and Sangeeta Dhaubhadel
    Citation: BMC Genomics 2018 19:260
    Content type: Research article Published on:

  19. Solanum elaeagnifolium, an invasive weed of the Solanaceae family, is poorly studied although it poses a significant threat to crops. Here the analysis of the transcriptome of S. elaea...

    Authors: Aphrodite Tsaballa, Alexandros Nikolaidis, Foteini Trikka, Codruta Ignea, Sotirios C. Kampranis, Antonios M. Makris and Anagnostis Argiriou
    Citation: BMC Genomics 2015 16:504
    Content type: Research article Published on:

  20. Cyst nematodes are devastating plant parasites that become sedentary within plant roots and induce the transformation of normal plant cells into elaborate feeding cells with the help of secreted effectors, the...

    Authors: Axel A Elling, Makedonka Mitreva, Xiaowu Gai, John Martin, Justin Recknor, Eric L Davis, Richard S Hussey, Dan Nettleton, James P McCarter and Thomas J Baum
    Citation: BMC Genomics 2009 10:58
    Content type: Research article Published on:

  22. Alpha tubulin is a fundamental component of the cytoskeleton which is responsible for cell shape and is involved in cell division, ciliary and flagellar motility and intracellular transport. Alpha tubulin gene...

    Authors: César A Ramírez, José M Requena and Concepción J Puerta
    Citation: BMC Genomics 2013 14:454
    Content type: Research article Published on:

  23. Methane represents 16 % of total anthropogenic greenhouse gas emissions. It has been estimated that ruminant livestock produce ca. 29 % of this methane. As individual animals produce consistently different qua...

    Authors: R. John Wallace, John A. Rooke, Nest McKain, Carol-Anne Duthie, Jimmy J. Hyslop, David W. Ross, Anthony Waterhouse, Mick Watson and Rainer Roehe
    Citation: BMC Genomics 2015 16:839
    Content type: Research article Published on:

  24. Advances in DNA sequencing and proteomics have facilitated quantitative comparisons of snake venom composition. Most studies have employed one approach or the other. Here, both Illumina cDNA sequencing and LC/...

    Authors: Steven D Aird, Yutaka Watanabe, Alejandro Villar-Briones, Michael C Roy, Kouki Terada and Alexander S Mikheyev
    Citation: BMC Genomics 2013 14:790
    Content type: Research article Published on:

  25. Penicillium griseofulvum is associated in stored apples with blue mould, the most important postharvest disease of pome fruit. This pathogen can simultaneously produce both detrimental...

    Authors: Houda Banani, Marina Marcet-Houben, Ana-Rosa Ballester, Pamela Abbruscato, Luis González-Candelas, Toni Gabaldón and Davide Spadaro
    Citation: BMC Genomics 2016 17:19
    Content type: Research article Published on:

  28. Plant transitions to land require robust cell walls for regulatory adaptations and to resist changing environments. Cell walls provide essential plasticity for plant cell division and defense, which are often ...

    Authors: Wenjun Sun, Haomiao Yu, Moyang Liu, Zhaotang Ma and Hui Chen
    Citation: BMC Genomics 2021 22:252
    Content type: Research article Published on:

  29. Environmental temperature has serious implications in life cycle of aquatic ectotherms. Understanding the molecular mechanisms of temperature acclimation and adaptation of marine organisms is of the uttermost ...

    Authors: Teshome Tilahun Bizuayehu, Steinar D Johansen, Velmurugu Puvanendran, Hilde Toften and Igor Babiak
    Citation: BMC Genomics 2015 16:305
    Content type: Research article Published on:

  30. Post-transcriptional regulation by small RNAs (sRNAs) in bacteria is now recognized as a wide-spread regulatory mechanism modulating a variety of physiological responses including virulence. In Streptococcus pneu...

    Authors: Patrick Marx, Michael Nuhn, Martá Kovács, Regine Hakenbeck and Reinhold Brückner
    Citation: BMC Genomics 2010 11:661
    Content type: Research article Published on:

  31. Anopheles gambiae has been shown to change its global gene expression patterns upon Plasmodium infection. While many alterations are directly related to the mosquito's innate immune response, parasite invasion is...

    Authors: Rute C Félix, Pie Müller, Vera Ribeiro, Hilary Ranson and Henrique Silveira
    Citation: BMC Genomics 2010 11:312
    Content type: Research article Published on:

  32. Tall fescue (Festuca arundinacea Schreb.) is a major cool-season forage and turfgrass species. The low tiller density and size dramatically limits its turf performance and forage yield. MicroRNAs (miRNA)-genes mo...

    Authors: Tao Hu, Tao Wang, Huiying Li, Misganaw Wassie, Huawei Xu and Liang Chen
    Citation: BMC Genomics 2020 21:696
    Content type: Research article Published on:

  34. Multidrug and toxic compound extrusion (MATE) family is an important group of the multidrug efflux transporters that extrude organic compounds, transporting a broad range of substrates such as organic acids, p...

    Authors: Juge Liu, Yang Li, Wei Wang, Junyi Gai and Yan Li
    Citation: BMC Genomics 2016 17:223
    Content type: Research article Published on:

  35. Symplocos paniculata, asiatic sweetleaf or sapphire berry, is a widespread shrub or small tree from Symplocaceae with high oil content and excellent fatty acid composition in fruit. It...

    Authors: Qiang Liu, Youping Sun, Jinzheng Chen, Peiwang Li, Changzhu Li, Genhua Niu and Lijuan Jiang
    Citation: BMC Genomics 2016 17:929
    Content type: Research article Published on:

  36. Copy Number Variations (CNVs) are gain or loss of DNA segments that are known to play a role in shaping a wide range of phenotypes. In this study, we used two dairy cattle populations, Holstein Friesian and Je...

    Authors: Young-Lim Lee, Mirte Bosse, Erik Mullaart, Martien A. M. Groenen, Roel F. Veerkamp and Aniek C. Bouwman
    Citation: BMC Genomics 2020 21:89
    Content type: Research article Published on:

  37. Open reading frames are common in long noncoding RNAs (lncRNAs) and 5’UTRs of protein coding transcripts (uORFs). The question of whether those ORFs are translated was recently addressed by several groups usin...

    Authors: Alexandra Popa, Kevin Lebrigand, Pascal Barbry and Rainer Waldmann
    Citation: BMC Genomics 2016 17:52
    Content type: Methodology article Published on:

  38. Brachyspira (B.) hyodysenteriae is a fastidious anaerobe spirochete that can cause swine dysentery, a severe mucohaemorragic colitis that affects pig production and animal welfare worldwide. In Switzerland, the p...

    Authors: Ana Belén García-Martín, Thomas Roder, Sarah Schmitt, Friederike Zeeh, Rémy Bruggmann and Vincent Perreten
    Citation: BMC Genomics 2022 23:131
    Content type: Research Published on:

  39. The role of small non-coding microRNAs (miRNAs) in several types of cancer has been evident. However, its expression studies have never been performed in gastric cancer (GC) patients from Saudi population. Fir...

    Authors: Fehmida Bibi, Muhammad I. Naseer, Sana Akhtar Alvi, Muhammad Yasir, Asif A. Jiman-Fatani, Ali Sawan, Adel M. Abuzenadah, Mohammed H. Al-Qahtani and Esam I. Azhar
    Citation: BMC Genomics 2016 17(Suppl 9):751
    Content type: Research Published on:

    This article is part of a Supplement: Volume 17 Supplement 9

  40. In this editorial, we first summarize the 2016 International Conference on Intelligent Biology and Medicine (ICIBM 2016) that was held on December 8–10, 2016 in Houston, Texas, USA, and then briefly introduce ...

    Authors: Zhongming Zhao, Zhandong Liu, Ken Chen, Yan Guo, Genevera I. Allen, Jiajie Zhang, W. Jim Zheng and Jianhua Ruan
    Citation: BMC Genomics 2017 18(Suppl 6):703
    Content type: Introduction Published on:

    This article is part of a Supplement: Volume 18 Supplement 6

  41. The characteristic pink-reddish color in the salmonids fillet is an important, appealing quality trait for consumers and producers. The color results from diet supplementation with carotenoids, which accounts ...

    Authors: Ridwan O. Ahmed, Ali Ali, Tim Leeds and Mohamed Salem
    Citation: BMC Genomics 2023 24:579
    Content type: Research Published on:

  42. Human rhinoviruses (HRV), the most frequent cause of respiratory infections, include 99 different serotypes segregating into two species, A and B. Rhinoviruses share extensive genomic sequence similarity with ...

    Authors: Caroline Tapparel, Thomas Junier, Daniel Gerlach, Samuel Cordey, Sandra Van Belle, Luc Perrin, Evgeny M Zdobnov and Laurent Kaiser
    Citation: BMC Genomics 2007 8:224
    Content type: Research article Published on:

  43. The relative abundance of five dominant fatty acids (FAs) (palmitic, stearic, oleic, linoleic and linolenic acids) is a major factor determining seed quality in soybean.

    Authors: Ying-hui Li, Jochen C. Reif, Yan-song Ma, Hui-long Hong, Zhang-xiong Liu, Ru-zhen Chang and Li-juan Qiu
    Citation: BMC Genomics 2015 16:841
    Content type: Research article Published on:

  44. Effective target therapies for intrahepatic cholangiocarcinoma (ICC) have not been identified so far. One of the reasons may be the genetic evolution from primary (PR) to recurrent (REC) tumors. We aim to iden...

    Authors: C. Peraldo-Neia, P. Ostano, G. Cavalloni, Y. Pignochino, D. Sangiolo, L. De Cecco, E. Marchesi, D. Ribero, A. Scarpa, A. M. De Rose, A. Giuliani, F. Calise, C. Raggi, P. Invernizzi, M. Aglietta, G. Chiorino…
    Citation: BMC Genomics 2018 19:440
    Content type: Research article Published on:

  46. The microstructure of trabecular bone is a composite trait governed by a complex interaction of multiple genetic determinants. Identifying these genetic factors should significantly improve our ability to pred...

    Authors: Roei Levy, Richard F. Mott, Fuad A. Iraqi and Yankel Gabet
    Citation: BMC Genomics 2015 16:1013
    Content type: Research article Published on:

  47. Plastid genomes, also known as plastomes, are shaped by the selective forces acting on the fundamental cellular functions they code for and thus they are expected to preserve signatures of the adaptive path un...

    Authors: Shiliang Hu, Gaurav Sablok, Bo Wang, Dong Qu, Enrico Barbaro, Roberto Viola, Mingai Li and Claudio Varotto
    Citation: BMC Genomics 2015 16:306
    Content type: Research article Published on:

  48. Corynebacterium glutamicum, a Gram-positive bacterium of the class Actinobacteria, is an industrially relevant producer of amino acids. Several methods for the targeted genetic manipulation of this organism and r...

    Authors: Sascha Mormann, Alexander Lömker, Christian Rückert, Lars Gaigalat, Andreas Tauch, Alfred Pühler and Jörn Kalinowski
    Citation: BMC Genomics 2006 7:205
    Content type: Research article Published on:

  49. Cyanobacteria constitute a serious threat to freshwater ecosystems by producing toxic secondary metabolites, e.g. microcystins. These microcystins have been shown to harm livestock, pets and humans and to affe...

    Authors: Anke Schwarzenberger, Thomas Sadler, Susanne Motameny, Kamel Ben-Khalifa, Peter Frommolt, Janine Altmüller, Kathryn Konrad and Eric von Elert
    Citation: BMC Genomics 2014 15:776
    Content type: Research article Published on:

  50. The deep-sea snail Phymorhynchus buccinoides belongs to the genus Phymorhynchus (Neogastropoda: Raphitomidae), and it is a dominant specie in the cold seep habitat. As the environment of the cold seep is characte...

    Authors: Zhaoqun Liu, Yuting Huang, Hao Chen, Chang Liu, Minxiao Wang, Chao Bian, Lingling Wang and Linsheng Song
    Citation: BMC Genomics 2023 24:679
    Content type: Research Published on:

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