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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 55 of 128

  1. HPA axis plays a major role in physiological homeostasis. It is also involved in stress and adaptive response to the environment. In farm animals in general and specifically in pigs, breeding strategies have h...

    Authors: Valérie Sautron, Elena Terenina, Laure Gress, Yannick Lippi, Yvon Billon, Catherine Larzul, Laurence Liaubet, Nathalie Villa-Vialaneix and Pierre Mormède
    Citation: BMC Genomics 2015 16:961
  2. In recent years an increasing number of yeast infections in humans have been related to certain clinical isolates of Saccharomyces cerevisiae. Some clinical strains showed in vivo and in vitro virulence traits an...

    Authors: Silvia Llopis, Amparo Querol, Antje Heyken, Bernhard Hube, Lene Jespersen, M Teresa Fernández-Espinar and Roberto Pérez-Torrado
    Citation: BMC Genomics 2012 13:419
  3. 'Omics' tools provide novel opportunities for system-wide analysis of complex cellular functions. Secondary metabolism is an example of a complex network of biochemical pathways, which, although well mapped fr...

    Authors: Debra Rossouw, Tormod Næs and Florian F Bauer
    Citation: BMC Genomics 2008 9:530
  4. Incilaria (= Meghimatium) fruhstorferi is an air-breathing land slug found in restricted habitats of Japan, Taiwan and selected provinces of South Korea (Jeju, Chuncheon, Busan, and Deokjeokdo). The species is on...

    Authors: Bharat Bhusan Patnaik, Jong Min Chung, Hee Ju Hwang, Min Kyu Sang, Jie Eun Park, Hye Rin Min, Hang Chul Cho, Neha Dewangan, Snigdha Baliarsingh, Se Won Kang, So Young Park, Yong Hun Jo, Hong Seog Park, Wan Jong Kim, Yeon Soo Han, Jun Sang Lee…
    Citation: BMC Genomics 2019 20:154
  5. Spermatozoa have a remarkable epigenome in line with their degree of specialization, their unique nature and different requirements for successful fertilization. Accordingly, perturbations in the establishment...

    Authors: Jean-Philippe Perrier, Eli Sellem, Audrey Prézelin, Maxime Gasselin, Luc Jouneau, François Piumi, Hala Al Adhami, Michaël Weber, Sébastien Fritz, Didier Boichard, Chrystelle Le Danvic, Laurent Schibler, Hélène Jammes and Hélène Kiefer
    Citation: BMC Genomics 2018 19:404
  6. Climate change models predict more frequent incidents of heat stress worldwide. This trend will contribute to food insecurity, particularly for some of the most vulnerable regions, by limiting the productivity...

    Authors: Ali Soltani, Sarathi M. Weraduwage, Thomas D. Sharkey and David B. Lowry
    Citation: BMC Genomics 2019 20:312
  7. To identify the genes involved in the development of low temperature (LT) tolerance in hexaploid wheat, we examined the global changes in expression in response to cold of the 55,052 potentially unique genes r...

    Authors: Debbie Laudencia-Chingcuanco, Seedhabadee Ganeshan, Frank You, Brian Fowler, Ravindra Chibbar and Olin Anderson
    Citation: BMC Genomics 2011 12:299
  8. To unravel molecular targets involved in glycopeptide resistance, three isogenic strains of Staphylococcus aureus with different susceptibility levels to vancomycin or teicoplanin were subjected to whole-genome m...

    Authors: Alexander Scherl, Patrice François, Yvan Charbonnier, Jacques M Deshusses, Thibaud Koessler, Antoine Huyghe, Manuela Bento, Jianru Stahl-Zeng, Adrien Fischer, Alexandre Masselot, Alireza Vaezzadeh, Francesca Gallé, Adriana Renzoni, Pierre Vaudaux, Daniel Lew, Catherine G Zimmermann-Ivol…
    Citation: BMC Genomics 2006 7:296
  9. The hypothalamus plays a central role in regulating appetite and metabolism. However, the gene networks within the hypothalamus that regulate feed intake and metabolism, and the effects of fasting on those pat...

    Authors: Stacy E Higgins, Laura E Ellestad, Nares Trakooljul, Fiona McCarthy, Jason Saliba, Larry A Cogburn and Tom E Porter
    Citation: BMC Genomics 2010 11:162
  10. The use of computational methods for predicting protein interaction networks will continue to grow with the number of fully sequenced genomes available. The Co-Conservation method, also known as the Phylogenet...

    Authors: Anis Karimpour-Fard, Lawrence Hunter and Ryan T Gill
    Citation: BMC Genomics 2007 8:393
  11. The caffeoyl-CoA-O methyltransferase (CCoAOMT) family plays a crucial role in the oxidative methylation of phenolic substances and is involved in various plant processes, including growth, development, and stress...

    Authors: Yiqing Wang, Tao Wang, Siyu Qi, Jiamin Zhao, Jiumei Kong, Zhihui Xue, Weijiang Sun and Wen Zeng
    Citation: BMC Genomics 2024 25:238
  12. Peanut is the most essential oil and food crop globally due to its high oil and protein content. Root-knot nematode infects peanut roots, causing poor development and severely limiting peanut yields worldwide....

    Authors: Ping Xu, Hui Li, Xiaohua Wang, Ge Zhao, Xiaofei Lu, Shengjie Dai, Xiaoyu Cui, Mei Yuan and Zhenning Liu
    Citation: BMC Genomics 2022 23:239
  13. There has been an increasing body of epidemiologic and biochemical evidence implying the role of cerebral insulin resistance in Alzheimer-type dementia. For a better understanding of the insulin effect on the ...

    Authors: Omar Abdul-Rahman, Maria Sasvari-Szekely, Agota Ver, Klara Rosta, Bernadett K Szasz, Eva Kereszturi and Gergely Keszler
    Citation: BMC Genomics 2012 13:81
  14. Pleurotus giganteus is a commonly cultivated mushroom with notable high temperature resistance, making it significant for the growth of the edible fungi industry in the tropics. Despite its practical importance,,...

    Authors: Yang Yang, Yongru Pian, Jingyi Li, Lin Xu, Zhu Lu, Yueting Dai and Qinfen Li
    Citation: BMC Genomics 2023 24:552
  15. Root system architecture is important for water acquisition and nutrient acquisition for all crops. In soybean breeding programs, wild soybean alleles have been used successfully to enhance yield and seed comp...

    Authors: Silvas J Prince, Li Song, Dan Qiu, Joao V Maldonado dos Santos, Chenglin Chai, Trupti Joshi, Gunvant Patil, Babu Valliyodan, Tri D Vuong, Mackensie Murphy, Konstantinos Krampis, Dominic M Tucker, Ruslan Biyashev, Anne E Dorrance, MA Saghai Maroof, Dong Xu…
    Citation: BMC Genomics 2015 16:132
  16. The investigation of transcriptome profiles using short reads in non-model organisms, which lack of well-annotated genomes, is limited by partial gene reconstruction and isoform detection. In contrast, long-re...

    Authors: Giuseppe D. Puglia, Andrey D. Prjibelski, Domenico Vitale, Elena Bushmanova, Karl J. Schmid and Salvatore A. Raccuia
    Citation: BMC Genomics 2020 21:317
  17. Much of the morbidity associated with short bowel syndrome (SBS) is attributed to effects of decreased enteral nutrition and administration of total parenteral nutrition (TPN). We hypothesized that acute SBS a...

    Authors: Kathy A. Schall, Matthew E. Thornton, Mubina Isani, Kathleen A. Holoyda, Xiaogang Hou, Ching-Ling Lien, Brendan H. Grubbs and Tracy C. Grikscheit
    Citation: BMC Genomics 2017 18:23
  18. RNAi technology by feeding of E. coli containing dsRNA in C. elegans has significantly contributed to further our understanding of many different fields, including genetics, molecular biology, developmental biolo...

    Authors: Mark Elvin, Laurens B Snoek, Martin Frejno, Ulrike Klemstein, Jan E Kammenga and Gino B Poulin
    Citation: BMC Genomics 2011 12:510
  19. Porcine embryos undergo rapid differentiation and expansion between Days 8 and 12 before attaching to the maternal uterine epithelial surface after Day 13. It is known that maternal recognition of pregnancy an...

    Authors: Shuqin Zeng, Jochen Bick, David Kradolfer, Johannes Knubben, Veronika L. Flöter, Stefan Bauersachs and Susanne E. Ulbrich
    Citation: BMC Genomics 2019 20:679
  20. Podosphaera xanthii is the main causal agent of powdery mildew disease in cucurbits and is responsible for important yield losses in these crops worldwide. Powdery mildew fungi are obligate biotrophs. In these pa...

    Authors: Álvaro Polonio, Pedro Seoane, M. Gonzalo Claros and Alejandro Pérez-García
    Citation: BMC Genomics 2019 20:543
  21. Biological nitrogen fixation is highly controlled at the transcriptional level by regulatory networks that respond to the availability of fixed nitrogen. In many diazotrophs, addition of excess ammonium in the...

    Authors: Yongliang Yan, Shuzhen Ping, Junping Peng, Yunlei Han, Liang Li, Jian Yang, Yuetan Dou, Yan Li, Huili Fan, Ying Fan, Danhua Li, Yuhua Zhan, Ming Chen, Wei Lu, Wei Zhang, Qi Cheng…
    Citation: BMC Genomics 2010 11:11
  22. The popularity of Muscovy ducks is attributed not only to their conformation traits but also to their slightly higher content of breast and leg meat, as well as their stronger-tasting meat compared to that of ...

    Authors: Jiangnan Huang, Xiaolan Xiong, Weihong Zhang, Xiaolian Chen, Yue Wei, Haiqin Li, Jinfang Xie, Qipeng Wei and Quanyong Zhou
    Citation: BMC Genomics 2024 25:340
  23. Furunculosis, a disease caused with gram negative bacteria Aeromonas salmonicida produces heavy losses in aquaculture. Vaccination against furunculosis reduces mortality of Atlantic salmon but fails to eradicate ...

    Authors: Stanko Škugor, Sven Martin Jørgensen, Bjarne Gjerde and Aleksei Krasnov
    Citation: BMC Genomics 2009 10:503
  24. Long non-coding RNAs (lncRNAs) play essential roles in developmental processes and disease development at the transcriptional and post-transcriptional levels across diverse taxa. However, only few studies have...

    Authors: Gobong Choi, Jongbum Jeon, Hyunjun Lee, Shenxian Zhou and Yong-Hwan Lee
    Citation: BMC Genomics 2022 23:132
  25. The purpose of this work was to characterize the expression of drug and nutrient carriers along the anterior-posterior and crypt-villus axes of the intestinal epithelium and to study the validity of utilizing ...

    Authors: Pascale Anderle, Thierry Sengstag, David M Mutch, Martin Rumbo, Viviane Praz, Robert Mansourian, Mauro Delorenzi, Gary Williamson and Matthew-Alan Roberts
    Citation: BMC Genomics 2005 6:69
  26. The hypothalamus plays a key role in the stress response. While early life stress (ELS) increases susceptibility to psychiatric disorders including major depressive disorder (MDD), acute stress during adulthoo...

    Authors: Lauren Allen McKibben and Yogesh Dwivedi
    Citation: BMC Genomics 2021 22:701
  27. Previous studies of individual genes have shown that in a self-enforcing way, dimethylation at histone 3 lysine 9 (dimethyl-H3K9) and DNA methylation cooperate to maintain a repressive mode of inactive genes. ...

    Authors: Jiejun Wu, Shu-Huei Wang, Dustin Potter, Joseph C Liu, Laura T Smith, Yue-Zhong Wu, Tim H-M Huang and Christoph Plass
    Citation: BMC Genomics 2007 8:131
  28. Sclerotinia sclerotiorum is a broad-host range necrotrophic pathogen which is the causative agent of Sclerotinia stem rot (SSR), and a major disease of soybean (Glycine max). A time course transcriptomic analysis...

    Authors: Nathaniel M. Westrick, Ashish Ranjan, Sachin Jain, Craig R. Grau, Damon L. Smith and Mehdi Kabbage
    Citation: BMC Genomics 2019 20:157
  29. Teladorsagia circumcincta (order Strongylida) is an economically important parasitic nematode of small ruminants (including sheep and goats) in temperate climatic regions of the world. Improved insights into the ...

    Authors: Ranjeeta Menon, Robin B Gasser, Makedonka Mitreva and Shoba Ranganathan
    Citation: BMC Genomics 2012 13(Suppl 7):S10

    This article is part of a Supplement: Volume 13 Supplement 7

  30. Prostatic Acid Phosphatase (PAP) is an enzyme that is produced primarily in the prostate and functions as a cell growth regulator and potential tumor suppressor. Understanding the genetic regulation of this en...

    Authors: Lyndsay A. Staley, Mark T. W. Ebbert, Daniel Bunker, Matthew Bailey, Perry G. Ridge, Alison M. Goate and John S. K. Kauwe
    Citation: BMC Genomics 2016 17(Suppl 3):439

    This article is part of a Supplement: Volume 17 Supplement 3

  31. Male sterility is a simple and efficient pollination control system that is widely exploited in hybrid breeding. In upland cotton, CCRI9106, a photosensitive genetic male sterile (PGMS) mutant isolated from CC...

    Authors: Meng Zhang, Ji Liu, Qiang Ma, Yuan Qin, Hantao Wang, Pengyun Chen, Liang Ma, Xiaokang Fu, Longfu Zhu, Hengling Wei and Shuxun Yu
    Citation: BMC Genomics 2020 21:825
  32. Eukaryotic cellular machineries are intricately regulated by several molecular mechanisms involving transcriptional control, post-translational control and post-translational modifications of proteins (PTMs). ...

    Authors: Rajan Pandey, Asif Mohmmed, Christine Pierrot, Jamal Khalife, Pawan Malhotra and Dinesh Gupta
    Citation: BMC Genomics 2014 15:1024
  33. Intensive selection for growth rate (GR) in broiler chickens carries negative after-effects, such as aberrations in skeletal development and the immune system, heart failure, and deterioration of meat quality....

    Authors: Katarzyna Piórkowska, Kacper Żukowski, Katarzyna Połtowicz, Joanna Nowak, Katarzyna Ropka-Molik, Natalia Derebecka, Joanna Wesoły and Dorota Wojtysiak
    Citation: BMC Genomics 2020 21:509
  34. Gastropods of the genus Biomphalaria (Family Planorbidae) are exploited as vectors by Schistosoma mansoni, the most common causative agent of human intestinal schistosomiasis. Using improved genomic resources, ov...

    Authors: Lijun Lu, Lijing Bu, Martina R. Laidemitt, Si-Ming Zhang and Eric S. Loker
    Citation: BMC Genomics 2024 25:608
  35. Transcription factors of the basic leucine zipper (bZIP) family represent exclusively in eukaryotes and have been shown to regulate diverse biological processes in plant growth and development as well as in ab...

    Authors: Dayong Li, Fuyou Fu, Huijuan Zhang and Fengming Song
    Citation: BMC Genomics 2015 16:771
  36. Purple non-heading Chinese cabbage [Brassica campestris (syn. Brassica rapa) ssp. chinensis] has become popular because of its richness in anthocyanin. However, anthocyanin only accumulates in the upper epidermis...

    Authors: Qian Zhou, Xinfeng Xu, Mengjie Li, Xiaoxue Yang, Meiyun Wang, Ying Li, Xilin Hou and Tongkun Liu
    Citation: BMC Genomics 2024 25:425
  37. Pantoea ananatis is found in a wide range of natural environments, including water, soil, as part of the epi- and endophytic flora of various plant hosts, and in the insect gut. Some strains have proven effective...

    Authors: Pieter De Maayer, Wai Yin Chan, Enrico Rubagotti, Stephanus N Venter, Ian K Toth, Paul R J Birch and Teresa A Coutinho
    Citation: BMC Genomics 2014 15:404
  38. Sexual dimorphism in brain gene expression has been recognized in several animal species. However, the relevant regulatory mechanisms remain poorly understood. To investigate whether sex-biased gene expression...

    Authors: Björn Reinius, Chengxi Shi, Liu Hengshuo, Kuljeet Singh Sandhu, Katarzyna J Radomska, Glenn D Rosen, Lu Lu, Klas Kullander, Robert W Williams and Elena Jazin
    Citation: BMC Genomics 2010 11:614
  39. Halyomorpha halys (Stål) (Insecta:Hemiptera;Pentatomidae), commonly known as the Brown Marmorated Stink Bug (BMSB), is an invasive pest of the mid-Atlantic region of the United States, causing economically import...

    Authors: Panagiotis Ioannidis, Yong Lu, Nikhil Kumar, Todd Creasy, Sean Daugherty, Marcus C Chibucos, Joshua Orvis, Amol Shetty, Sandra Ott, Melissa Flowers, Naomi Sengamalay, Luke J Tallon, Leslie Pick and Julie C Dunning Hotopp
    Citation: BMC Genomics 2014 15:738
  40. Yellow seed is one favorite trait for the breeding of Brassica oilseed crops, but the performance of seed coat color is very complicated due to the involvement of various pigments. The change of seed coat color o...

    Authors: Daozong Chen, Haidong Chen, Guoqiang Dai, Haimei Zhang, Yi Liu, Wenjie Shen, Bo Zhu, Cheng Cui and Chen Tan
    Citation: BMC Genomics 2023 24:103
  41. Arsenic is present in numerous ecosystems and microorganisms have developed various mechanisms to live in such hostile environments. Herminiimonas arsenicoxydans, a bacterium isolated from arsenic contaminated sl...

    Authors: Jessica Cleiss-Arnold, Sandrine Koechler, Caroline Proux, Marie-Laure Fardeau, Marie-Agnès Dillies, Jean-Yves Coppee, Florence Arsène-Ploetze and Philippe N Bertin
    Citation: BMC Genomics 2010 11:709
  42. Mapping expression quantitative trait loci (eQTLs) in skeletal muscle tissue in pigs is crucial for understanding the relationship between genetic variation and phenotypic expression of carcass traits in meat ...

    Authors: Felipe André Oliveira Freitas, Luiz F. Brito, Simara Larissa Fanalli, Janaína Lustosa Gonçales, Bruna Pereira Martins da Silva, Mariah Castro Durval, Fernanda Nery Ciconello, Camila Sabino de Oliveira, Lucas Echevarria Nascimento, Izally Carvalho Gervásio, Julia Dezen Gomes, Gabriel Costa Monteiro Moreira, Bárbara Silva-Vignato, Luiz Lehmann Coutinho, Vivian Vezzoni de Almeida and Aline Silva Mello Cesar
    Citation: BMC Genomics 2024 25:14
  43. RNA interference (RNAi) is a powerful platform utilized to target transcription of specific genes and downregulate the protein product. To achieve effective silencing, RNAi is usually applied to cells or tissu...

    Authors: Nurazhani A. Raof, Deepa Rajamani, Hsun-Chieh Chu, Aniket Gurav, Joel M. Johnson, Frank W. LoGerfo, Manoj Bhasin and Leena Pradhan-Nabzdyk
    Citation: BMC Genomics 2016 17:20
  44. Neisseria gonorrhoeae can survive during oxygen starvation by reducing nitrite to nitrous oxide catalysed by the nitrite and nitric oxide reductases, AniA and NorB. The oxygen-sensing transcription factor, FNR, i...

    Authors: Rebekah N Whitehead, Tim W Overton, Lori AS Snyder, Simon J McGowan, Harry Smith, Jeff A Cole and Nigel J Saunders
    Citation: BMC Genomics 2007 8:35
  45. Pathogenic members of the Fusarium oxysporum species complex are responsible for vascular wilt disease on many important crops including legumes, where they can be one of the most destructive disease causing necr...

    Authors: Louise F. Thatcher, Angela H. Williams, Gagan Garg, Sally-Anne G. Buck and Karam B. Singh
    Citation: BMC Genomics 2016 17:860
  46. Many microorganisms have a wide temperature growth range and versatility to tolerate large thermal fluctuations in diverse environments, however not many have been fully explored over their entire growth tempe...

    Authors: Debora F Rodrigues, Natalia Ivanova, Zhili He, Marianne Huebner, Jizhong Zhou and James M Tiedje
    Citation: BMC Genomics 2008 9:547
  47. Root rot caused by Aphanomyces euteiches is one of the most destructive pea diseases while a distantly related species P. pisi has been recently described as the agent of pea and faba bean root rot. These two oom...

    Authors: Sara Hosseini, Malin Elfstrand, Fredrik Heyman, Dan Funck Jensen and Magnus Karlsson
    Citation: BMC Genomics 2015 16:627
  48. The spleen is the largest secondary lymphoid organ and the main site where stress erythropoiesis occurs. It is known that hypoxia triggers the expansion of erythroid progenitors; however, its effects on spleni...

    Authors: Haijing Wang, Daoxin Liu, Pengfei Song, Feng Jiang, Xiangwen Chi and Tongzuo Zhang
    Citation: BMC Genomics 2021 22:413

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