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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 77 of 128

  1. Aggression is influenced by individual variation in temperament as well as behavioral plasticity in response to adversity. DNA methylation is stably maintained over time, but also reversible in response to spe...

    Authors: Brian R. Herb, Molly S. Shook, Christopher J. Fields and Gene E. Robinson
    Citation: BMC Genomics 2018 19:216
    Content type: Research article Published on:

  2. MicroRNAs are the major class of gene-regulating molecules playing diverse roles through sequence complementarity to target mRNAs at post-transcriptional level. Tightly regulated expression and interaction of ...

    Authors: Md Munir Hossain, Nasser Ghanem, Michael Hoelker, Franca Rings, Chirawath Phatsara, Ernst Tholen, Karl Schellander and Dawit Tesfaye
    Citation: BMC Genomics 2009 10:443
    Content type: Research article Published on:

  3. Oomycetes are a group of filamentous microorganisms that includes both animal and plant pathogens and causes major agricultural losses. Phytophthora species can infect most crops and plants from natural ecosystem...

    Authors: Agnès Attard, Edouard Evangelisti, Naïma Kebdani-Minet, Franck Panabières, Emeline Deleury, Cindy Maggio, Michel Ponchet and Mathieu Gourgues
    Citation: BMC Genomics 2014 15:538
    Content type: Research article Published on:

  4. Teleosts are exposed to a broad range of external stimuli, which may be either of acute or chronic nature. The larval phase of certain fish species offer a unique opportunity to study the interactions between ...

    Authors: E. Sarropoulou, A. Tsalafouta, A. Y. M. Sundaram, G. D. Gilfillan, G. Kotoulas, N. Papandroulakis and M. Pavlidis
    Citation: BMC Genomics 2016 17:506
    Content type: Research article Published on:

  6. Trichoderma is a genus of mycotrophic filamentous fungi (teleomorph Hypocrea) which possess a bright variety of biotrophic and saprotrophic lifestyles. The ability to parasitize and/or kill other fungi (mycoparas...

    Authors: Lea Atanasova, Stephane Le Crom, Sabine Gruber, Fanny Coulpier, Verena Seidl-Seiboth, Christian P Kubicek and Irina S Druzhinina
    Citation: BMC Genomics 2013 14:121
    Content type: Research article Published on:

  7. Jatropha curcas, whose seed content is approximately 30–40% oil, is an ideal feedstock for producing biodiesel and bio-jet fuels. However, Jatropha plants have a low number of female flowers, which results in low...

    Authors: Bang-Zhen Pan, Mao-Sheng Chen, Jun Ni and Zeng-Fu Xu
    Citation: BMC Genomics 2014 15:974
    Content type: Research article Published on:

  8. Two year cancer bioassays conducted by the National Toxicology Program have shown chronic exposure to dioxin-like compounds (DLCs) to lead to the development of both neoplastic and non-neoplastic lesions in th...

    Authors: Bladimir J Ovando, Corie A Ellison, Chad M Vezina and James R Olson
    Citation: BMC Genomics 2010 11:583
    Content type: Research article Published on:

  9. MicroRNAs (miRNAs) are a novel class of gene regulators whose biogenesis involves hairpin structures called precursor miRNAs, or pre-miRNAs. A pre-miRNA is processed to make a miRNA:miRNA* duplex, which is the...

    Authors: Song Li, Edward A Mead, Shaohui Liang and Zhijian Tu
    Citation: BMC Genomics 2009 10:581
    Content type: Research article Published on:

  10. Transcriptome analysis is of great interest in clinical research, where significant differences between individuals can be translated into biomarkers of disease. Although next generation sequencing provides ro...

    Authors: Anastasios Mastrokolias, Johan T den Dunnen, GertJan B van Ommen, Peter AC 't Hoen and Willeke MC van Roon-Mom
    Citation: BMC Genomics 2012 13:28
    Content type: Research article Published on:

  11. Natural accessions of Arabidopsis thaliana are characterized by a high level of phenotypic variation that can be used to investigate the extent and mode of selection on the primary metabolic traits. A collection ...

    Authors: Liam H Childs, Hanna Witucka-Wall, Torsten Günther, Ronan Sulpice, Maria V Korff, Mark Stitt, Dirk Walther, Karl J Schmid and Thomas Altmann
    Citation: BMC Genomics 2010 11:188
    Content type: Research article Published on:

  13. Yeast-to-hypha transition is a major morphological change in fungi. Molecular regulators and pathways that are involved in this process have been extensively studied in model species, including Saccharomyces cere...

    Authors: M. Nigg and L. Bernier
    Citation: BMC Genomics 2016 17:920
    Content type: Research article Published on:

  14. Conidia are considered to be the primary cause of infections by Trichophyton rubrum.

    Authors: Tao Liu, Qian Zhang, Lingling Wang, Lu Yu, Wenchuan Leng, Jian Yang, Lihong Chen, Junping Peng, Li Ma, Jie Dong, Xingye Xu, Ying Xue, Yafang Zhu, Wenliang Zhang, Li Yang, Weijun Li…
    Citation: BMC Genomics 2007 8:100
    Content type: Research article Published on:

  15. RNA degradation is critical to the survival of all cells. With increasing evidence for pervasive transcription in cells, RNA degradation has gained recognition as a means of regulating gene expression. Yet, RN...

    Authors: Christopher W Williams and Heidi G Elmendorf
    Citation: BMC Genomics 2011 12:586
    Content type: Research article Published on:

  16. Copepods are fundamental components of pelagic food webs, but reports on how molecular responses link to reproductive success in natural populations are still scarce. We present a de novo transcriptome assembl...

    Authors: Ennio Russo, Chiara Lauritano, Giuliana d’Ippolito, Angelo Fontana, Diana Sarno, Eric von Elert, Adrianna Ianora and Ylenia Carotenuto
    Citation: BMC Genomics 2020 21:693
    Content type: Research article Published on:

  17. Apoptosis is an important process for an organism’s innate immune system to respond to pathogens, while also allowing for cell differentiation and other essential life functions. Caspases are one of the key pr...

    Authors: Susanne Vogeler, Stefano Carboni, Xiaoxu Li and Alyssa Joyce
    Citation: BMC Genomics 2021 22:80
    Content type: Research article Published on:

  18. RNA is known to play diverse roles in gene regulation. The clues for this regulatory function of RNA are embedded in its ability to fold into intricate secondary and tertiary structure.

    Authors: Kriti Kaushik, Ambily Sivadas, Shamsudheen Karuthedath Vellarikkal, Ankit Verma, Rijith Jayarajan, Satyaprakash Pandey, Tavprithesh Sethi, Souvik Maiti, Vinod Scaria and Sridhar Sivasubbu
    Citation: BMC Genomics 2018 19:147
    Content type: Research article Published on:

  20. Alfalfa (Medicago sativa L.) is the primary forage legume crop species in the United States and plays essential economic and ecological roles in agricultural systems across the country. Modern alfalfa is the resu...

    Authors: Jamie A. O’Rourke, Fengli Fu, Bruna Bucciarelli, S. Sam Yang, Deborah A. Samac, JoAnn F. S. Lamb, Maria J. Monteros, Michelle A. Graham, John W. Gronwald, Nick Krom, Jun Li, Xinbin Dai, Patrick X. Zhao and Carroll P. Vance
    Citation: BMC Genomics 2015 16:502
    Content type: Research article Published on:

  21. Variation in seed oil composition and content among soybean varieties is largely attributed to differences in transcript sequences and/or transcript accumulation of oil production related genes in seeds. Disco...

    Authors: Wolfgang Goettel, Eric Xia, Robert Upchurch, Ming-Li Wang, Pengyin Chen and Yong-Qiang Charles An
    Citation: BMC Genomics 2014 15:299
    Content type: Research article Published on:

  22. Small untranslated RNAs (sRNAs) seem to be far more abundant than previously believed. The number of sRNAs confirmed in E. coli through various approaches is above 70, with several hundred more sRNA candidate gen...

    Authors: Vincent M Ulvé, Emeric W Sevin, Angélique Chéron and Frédérique Barloy-Hubler
    Citation: BMC Genomics 2007 8:467
    Content type: Research article Published on:

  23. Cotton is the most essential textile crop worldwide, and phytohormones are critical for cotton fiber development. One example is the role of auxin in fiber initiation, but we know little molecular basis. Micro...

    Authors: Tianlun Zhao, Xiaojian Xu, Min Wang, Cheng Li, Cong Li, Rubing Zhao, Shuijin Zhu, Qiuling He and Jinhong Chen
    Citation: BMC Genomics 2019 20:421
    Content type: Research article Published on:

  24. As sex determines mammalian development, understanding the nature and developmental dynamics of the sexually dimorphic transcriptome is important. To explore this, we generated 76 genome-wide RNA-seq profiles ...

    Authors: Robert Lowe, Carolina Gemma, Vardhman K Rakyan and Michelle L Holland
    Citation: BMC Genomics 2015 16:295
    Content type: Research article Published on:

  25. Organisms utilize a multitude of mechanisms for responding to changing environmental conditions, maintaining their functional homeostasis and to overcome stress situations. One of the most important mechanisms...

    Authors: Vinicius A. C. Abreu, Sintia Almeida, Sandeep Tiwari, Syed Shah Hassan, Diego Mariano, Artur Silva, Jan Baumbach, Vasco Azevedo and Richard Röttger
    Citation: BMC Genomics 2015 16:452
    Content type: Database Published on:

  26. Next generation sequencing provides new opportunities to explore transcriptomes. However, challenges remain for accurate differentiation of homoeoalleles and paralogs, particularly in polyploid organisms with ...

    Authors: Juan J Gutierrez-Gonzalez, Zheng Jin Tu and David F Garvin
    Citation: BMC Genomics 2013 14:471
    Content type: Research article Published on:

  27. Finger millet (Eleusine coracana (L.) Gaertn.) is an important staple food crop widely grown in Africa and South Asia. Among the millets, finger millet has high amount of calcium, methionine, tryptophan, fiber, a...

    Authors: Shailaja Hittalmani, H. B. Mahesh, Meghana Deepak Shirke, Hanamareddy Biradar, Govindareddy Uday, Y. R. Aruna, H. C. Lohithaswa and A. Mohanrao
    Citation: BMC Genomics 2017 18:465
    Content type: Research article Published on:

  29. Fatty liver disease prevalently occurs in commercial postpartum dairies, resulting in a worldwide high culling rate because of their subsequent limitations of production and reproduction performance.

    Authors: Letian Zhang, Tingjun Liu, Chengzhang Hu, Xuan Zhang, Qin Zhang and Kerong Shi
    Citation: BMC Genomics 2021 22:640
    Content type: Research Published on:

  30. Fungi can undergo autophagic- or apoptotic-type programmed cell death (PCD) on exposure to antifungal agents, developmental signals, and stress factors. Filamentous fungi can also exhibit a form of cell death ...

    Authors: Natalie D Fedorova, Jonathan H Badger, Geoff D Robson, Jennifer R Wortman and William C Nierman
    Citation: BMC Genomics 2005 6:177
    Content type: Research article Published on:

  31. Salivary cell secretion (SCS) plays a critical role in blood feeding by medicinal leeches, making them of use for certain medical purposes even today.

    Authors: Vladislav V. Babenko, Oleg V. Podgorny, Valentin A. Manuvera, Artem S. Kasianov, Alexander I. Manolov, Ekaterina N. Grafskaia, Dmitriy A. Shirokov, Alexey S. Kurdyumov, Dmitriy V. Vinogradov, Anastasia S. Nikitina, Sergey I. Kovalchuk, Nickolay A. Anikanov, Ivan O. Butenko, Olga V. Pobeguts, Daria S. Matyushkina, Daria V. Rakitina…
    Citation: BMC Genomics 2020 21:331
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2020 21:503

  32. Bemisia tabaci Gennadius (Hemiptera: Aleyrodidae) is a serious pest of crops in different regions of the world. Our recent studies on the joint application of Akanthomyces attenuatus (a pathogenic insect fungus)...

    Authors: Jianhui Wu, Tingfei Sun, Muhammad Hamid Bashir, Baoli Qiu, Xingmin Wang and Shaukat Ali
    Citation: BMC Genomics 2022 23:808
    Content type: Research Published on:

  33. Varroa mites are widely considered the biggest honey bee health problem worldwide. Until recently, Varroa jacobsoni has been found to live and reproduce only in Asian honey bee (Apis c...

    Authors: Gladys K. Andino, Michael Gribskov, Denis L. Anderson, Jay D. Evans and Greg J. Hunt
    Citation: BMC Genomics 2016 17:926
    Content type: Research article Published on:

  34. Mutations in minor spliceosome components such as U12 snRNA (cerebellar ataxia) and U4atac snRNA (microcephalic osteodysplastic primordial dwarfism type 1 (MOPD1)) result in tissue-specific symptoms. Given tha...

    Authors: Anouk M. Olthof, Katery C. Hyatt and Rahul N. Kanadia
    Citation: BMC Genomics 2019 20:686
    Content type: Research article Published on:

  35. Mitochondria are organelles found in nearly all eukaryotic cells that play a crucial role in cellular survival and function. Mitochondrial function is under the control of nuclear and mitochondrial genomes. Wh...

    Authors: Patricia Jumbo-Lucioni, Su Bu, Susan T Harbison, Juanita C Slaughter, Trudy FC Mackay, Douglas R Moellering and Maria De Luca
    Citation: BMC Genomics 2012 13:659
    Content type: Research article Published on:

  36. Chilo suppressalis is a widespread rice pest that poses a major threat to food security in China. This pest can develop resistance to Cry toxins from Bacillus thuringiensis (Bt), threatening the sustainable use o...

    Authors: Geng Chen, Yanhui Wang, Yanmin Liu, Fajun Chen and Lanzhi Han
    Citation: BMC Genomics 2020 21:634
    Content type: Research article Published on:

  37. Norway spruce trees in subalpine forests frequently face infections by the needle rust fungus Chrysomyxa rhododendri, which causes significant growth decline and increased mortality of young trees. Yet, it is unk...

    Authors: Carlos Trujillo-Moya, Andrea Ganthaler, Wolfgang Stöggl, Ilse Kranner, Silvio Schüler, Reinhard Ertl, Sarah Schlosser, Jan-Peter George and Stefan Mayr
    Citation: BMC Genomics 2020 21:336
    Content type: Research article Published on:

  38. Systematic description of library quality and sequencing performance of single-cell RNA sequencing (scRNA-seq) data is imperative for subsequent downstream modules, including re-pooling libraries. While severa...

    Authors: Isar Nassiri, Benjamin Fairfax, Angela Lee, Yanxia Wu, David Buck and Paolo Piazza
    Citation: BMC Genomics 2023 24:381
    Content type: Software Published on:

  39. As a major threat to the oyster industry, Pacific Oyster Mortality Syndrome (POMS) is a polymicrobial disease affecting the main oyster species farmed across the world. POMS affects oyster juveniles and became...

    Authors: Julien de Lorgeril, Bruno Petton, Aude Lucasson, Valérie Perez, Pierre-Louis Stenger, Lionel Dégremont, Caroline Montagnani, Jean-Michel Escoubas, Philippe Haffner, Jean-François Allienne, Marc Leroy, Franck Lagarde, Jérémie Vidal-Dupiol, Yannick Gueguen and Guillaume Mitta
    Citation: BMC Genomics 2020 21:63
    Content type: Research article Published on:

  40. We identified a set of genes with an unexpected bimodal distribution among breast cancer patients in multiple studies. The property of bimodality seems to be common, as these genes were found on multiple micro...

    Authors: Marina Bessarabova, Eugene Kirillov, Weiwei Shi, Andrej Bugrim, Yuri Nikolsky and Tatiana Nikolskaya
    Citation: BMC Genomics 2010 11(Suppl 1):S8
    Content type: Research Published on:

    This article is part of a Supplement: Volume 11 Supplement 1

  41. Streptococcus intermedius, a member of the S. anginosus group, is a commensal bacterium present in the normal microbiota of human mucosal surfaces of the oral, gastrointestinal, and urogenital tracts. However, it...

    Authors: Dhiraj Sinha, Xifeng Sun, Mudra Khare, Michel Drancourt, Didier Raoult and Pierre-Edouard Fournier
    Citation: BMC Genomics 2021 22:522
    Content type: Research Published on:

  42. Date palm, as one of the most important fruit crops in North African and West Asian countries including Oman, is facing serious growth problems due to salinity, arising from persistent use of saline water for ...

    Authors: Mahmoud W. Yaish, Himanshu V. Patankar, Dekoum V. M. Assaha, Yun Zheng, Rashid Al-Yahyai and Ramanjulu Sunkar
    Citation: BMC Genomics 2017 18:246
    Content type: Research article Published on:

  43. Trichophyton rubrum is the most common dermatophyte causing fungal skin infections in humans. Asexual sporulation is an important means of propagation for T. rubrum, and conidia produced by this way are thought t...

    Authors: Wenchuan Leng, Tao Liu, Rui Li, Jian Yang, Candong Wei, Wenliang Zhang and Qi Jin
    Citation: BMC Genomics 2008 9:303
    Content type: Research article Published on:

  44. Corynebacterium pseudotuberculosis biovar ovis is a facultative intracellular pathogen, and the etiological agent of caseous lymphadenitis in small ruminants. During the infection process, the bacterium is subjec...

    Authors: Wanderson M Silva, Rodrigo D Carvalho, Siomar C Soares, Isabela FS Bastos, Edson L Folador, Gustavo HMF Souza, Yves Le Loir, Anderson Miyoshi, Artur Silva and Vasco Azevedo
    Citation: BMC Genomics 2014 15:1065
    Content type: Research article Published on:

  45. The white mold fungus Sclerotinia sclerotiorum is a devastating necrotrophic plant pathogen with a remarkably broad host range. The interaction of necrotrophs with their hosts is more complex than initially thoug...

    Authors: Koanna Guyon, Claudine Balagué, Dominique Roby and Sylvain Raffaele
    Citation: BMC Genomics 2014 15:336
    Content type: Research article Published on:

  46. The most common ladybird beetle, Coccinella septempunctata L., is an excellent predator of crop pests such as aphids and white flies, and it shows a wide range of adaptability, a large appetite and a high reprodu...

    Authors: Xiaoyang Qi, Lisheng Zhang, Yanhua Han, Xiaoyun Ren, Jian Huang and Hongyin Chen
    Citation: BMC Genomics 2015 16:1086
    Content type: Research article Published on:

  47. High-throughput omics technologies such as microarrays and next-generation sequencing (NGS) have become indispensable tools in biological research. Computational analysis and biological interpretation of omics...

    Authors: Leandro Hermida, Carine Poussin, Michael B Stadler, Sylvain Gubian, Alain Sewer, Dimos Gaidatzis, Hans-Rudolf Hotz, Florian Martin, Vincenzo Belcastro, Stéphane Cano, Manuel C Peitsch and Julia Hoeng
    Citation: BMC Genomics 2013 14:514
    Content type: Software Published on:

  48. Germin and germin-like proteins constitute a ubiquitous family of plant proteins. A role of some family members in defense against pathogen attack had been proposed based on gene regulation studies and transge...

    Authors: Mo Lu, Ying-Peng Han, Ji-Guo Gao, Xiang-Jing Wang and Wen-Bin Li
    Citation: BMC Genomics 2010 11:620
    Content type: Research article Published on:

    The Erratum to this article has been published in BMC Genomics 2011 12:16

  49. The genus Populus includes poplars, aspens and cottonwoods, which will be collectively referred to as poplars hereafter unless otherwise specified. Poplars are the dominant tree species in many forest ecosystems ...

    Authors: Steven G Ralph, Hye Jung E Chun, Dawn Cooper, Robert Kirkpatrick, Natalia Kolosova, Lee Gunter, Gerald A Tuskan, Carl J Douglas, Robert A Holt, Steven JM Jones, Marco A Marra and Jörg Bohlmann
    Citation: BMC Genomics 2008 9:57
    Content type: Research article Published on:

  50. Doubly uniparental inheritance (DUI) of mitochondrial DNA in bivalves is a fascinating exception to strictly maternal inheritance as practiced by all other animals. Recent work on DUI suggests that there may b...

    Authors: E. E. Chase, B. M. Robicheau, S. Veinot, S. Breton and D. T. Stewart
    Citation: BMC Genomics 2018 19:221
    Content type: Research article Published on:

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