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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Histone lysine methylation plays an important role in plant development and stress responses by activating or repressing gene expression. Histone lysine methylation is catalyzed by a class of SET-domain group ...

    Authors: Wenjie Li, Jinjiao Yan, Shicong Wang, Qianying Wang, Caixia Wang, Zhongxing Li, Dehui Zhang, Fengwang Ma, Qingmei Guan and Jidi Xu
    Citation: BMC Genomics 2021 22:283
    Content type: Research article Published on:

  2. Transposable elements (TEs) are common features in eukaryotic genomes that are known to affect genome evolution critically and to play roles in gene regulation. Vertebrate genomes are dominated by TEs, which c...

    Authors: Mohanad A. Ibrahim, Badr M. Al-Shomrani, Mathew Simenc, Sultan N. Alharbi, Fahad H. Alqahtani, Mohamed B. Al-Fageeh and Manee M. Manee
    Citation: BMC Genomics 2021 22:842
    Content type: Research article Published on:

  3. Seasonal estrus is a critical limiting factor of animal fecundity, and it involves changes in both ovarian biology and hormone secretion in different seasons. Previous studies indicate that two classes of smal...

    Authors: Ran Di, Jianning He, Shuhui Song, Dongmei Tian, Qiuyue Liu, Xiaojun Liang, Qing Ma, Min Sun, Jiandong Wang, Wenming Zhao, Guiling Cao, Jinxin Wang, Zhimin Yang, Ying Ge and Mingxing Chu
    Citation: BMC Genomics 2014 15:899
    Content type: Research article Published on:

  4. Phytophthora infestans is responsible for late blight, one of the most important potato diseases. Phenazine-1-carboxylic acid (PCA)-producing Pseudomonas fluorescens strain LBUM223 isolated in our laboratory show...

    Authors: Roxane Roquigny, Amy Novinscak, Tanya Arseneault, David L. Joly and Martin Filion
    Citation: BMC Genomics 2018 19:474
    Content type: Research article Published on:

  5. In Iran, river buffalo is of great importance. It plays an important role in the economy of the Country, because its adaptation to harsh climate conditions and long productive lifespan permitting its farming a...

    Authors: Maria G. Strillacci, Hossein Moradi-Shahrbabak, Pourya Davoudi, Seyed Mohammad Ghoreishifar, Mahdi Mokhber, Anoar Jamai Masroure and Alessandro Bagnato
    Citation: BMC Genomics 2021 22:305
    Content type: Research article Published on:

  6. The gut microbiome can influence life history traits associated with host fitness such as fecundity and longevity. In most organisms, these two life history traits are traded-off, while they are positively lin...

    Authors: Matteo Antoine Negroni, Francisca H. I. D. Segers, Fanny Vogelweith and Susanne Foitzik
    Citation: BMC Genomics 2020 21:816
    Content type: Research article Published on:

  7. The ascomycete fungus Ceratocystis cacaofunesta is the causal agent of wilt disease in cacao, which results in significant economic losses in the affected producing areas. Despite the economic importance of the C...

    Authors: Alinne Batista Ambrosio, Leandro Costa do Nascimento, Bruno V Oliveira, Paulo José P L Teixeira, Ricardo A Tiburcio, Daniela P Toledo Thomazella, Adriana F P Leme, Marcelo F Carazzolle, Ramon O Vidal, Piotr Mieczkowski, Lyndel W Meinhardt, Gonçalo A G Pereira and Odalys G Cabrera
    Citation: BMC Genomics 2013 14:91
    Content type: Research article Published on:

  8. The fungus Marssonina brunnea is a causal pathogen of Marssonina leaf spot that devastates poplar plantations by defoliating susceptible trees before normal fall leaf drop.

    Authors: Sheng Zhu, You-Zhi Cao, Cong Jiang, Bi-Yue Tan, Zhong Wang, Sisi Feng, Liang Zhang, Xiao-Hua Su, Brona Brejova, Tomas Vinar, Meng Xu, Ming-Xiu Wang, Shou-Gong Zhang, Min-Ren Huang, Rongling Wu and Yan Zhou
    Citation: BMC Genomics 2012 13:382
    Content type: Research article Published on:

  9. Intercellular adhesion and biofilm production by Staphylococcus aureus makes these bacteria resistant to antimicrobial therapy. Here, Methicillin-resistant Staphylococcus aureus (MRSA) strains were characterized ...

    Authors: Kifaya Azmi, Walaa Qrei and Ziad Abdeen
    Citation: BMC Genomics 2019 20:578
    Content type: Research article Published on:

  10. Clostridium thermocellum is a candidate consolidated bioprocessing biocatalyst, which is a microorganism that expresses enzymes for both cellulose hydrolysis and its fermentation to produce fuels such as lignocel...

    Authors: Shihui Yang, Richard J Giannone, Lezlee Dice, Zamin K Yang, Nancy L Engle, Timothy J Tschaplinski, Robert L Hettich and Steven D Brown
    Citation: BMC Genomics 2012 13:336
    Content type: Research article Published on:

  11. Accessory proteins have diverse roles in coronavirus pathobiology. One of them in SARS-CoV (the causative agent of the severe acute respiratory syndrome outbreak in 2002–2003) is encoded by the open reading fr...

    Authors: Anastassia Bykova, Andreu Saura, Galina V. Glazko, Abiel Roche-Lima, Vyacheslav Yurchenko and Igor B. Rogozin
    Citation: BMC Genomics 2023 24:387
    Content type: Research Published on:

  12. The BBX (B-box) family are zinc finger protein (ZFP) transcription factors that play an essential role in plant growth, development and response to abiotic stresses. Although BBX genes have been characterized ...

    Authors: Ruifang Ma, Jialu Chen, Bin Huang, Zhinuo Huang and Zhijun Zhang
    Citation: BMC Genomics 2021 22:533
    Content type: Research Published on:

  13. Flammulina filiformis (previously known as Asian F. velutipes) is a popular commercial edible mushroom. Many bioactive compounds with medicinal effects, such as polysaccharides and sesquiterpenoids, have been iso...

    Authors: Juan Chen, Jia-Mei Li, Yan-Jing Tang, Ke Ma, Bing Li, Xu Zeng, Xiao-Bin Liu, Yang Li, Zhu-Liang Yang, Wei-Nan Xu, Bao-Gui Xie, Hong-Wei Liu and Shun-Xing Guo
    Citation: BMC Genomics 2020 21:719
    Content type: Research article Published on:

  14. While the gargantuan multi-nation effort of sequencing T. aestivum gets close to completion, the annotation process for the vast number of wheat genes and proteins is in its infancy. Previous experimental studies...

    Authors: Dan Tulpan, Serge Leger, Alain Tchagang and Youlian Pan
    Citation: BMC Genomics 2015 16:299
    Content type: Research article Published on:

  15. Previously, several long non-coding RNAs (lncRNAs) were characterized as regulators in phosphate (Pi) starvation responses. However, systematic studies of novel lncRNAs involved in the Pi starvation signaling ...

    Authors: Jiapei Yuan, Ye Zhang, Jinsong Dong, Yuzhe Sun, Boon L. Lim, Dong Liu and Zhi John Lu
    Citation: BMC Genomics 2016 17:655
    Content type: Research article Published on:

  16. Splicing processes might play a major role in carcinogenesis and tumour progression. The Wnt pathway is of crucial relevance for cancer progression. Therefore we focussed on the Wnt/β-catenin signalling pathwa...

    Authors: Heike Pospisil, Alexander Herrmann, Kristine Butherus, Stefan Pirson, Jens G Reich and Wolfgang Kemmner
    Citation: BMC Genomics 2006 7:148
    Content type: Research article Published on:

  17. Crohn’s disease is one of the two categories of inflammatory bowel diseases that affect the gastrointestinal tract. The heritability estimate has been reported to be 0.75. Several genes linked to Crohn’s disea...

    Authors: Debora Garza-Hernandez, Maricruz Sepulveda-Villegas, Jose Garcia-Pelaez, Raul Aguirre-Gamboa, Peter L. Lakatos, Karol Estrada, Manuel Martinez-Vazquez and Victor Trevino
    Citation: BMC Genomics 2022 23:302
    Content type: Research Published on:

  18. Growth is a major economic production trait in aquaculture. Improvements in growth performance will reduce time and cost for fish to reach market size. However, genes underlying growth have not been fully expl...

    Authors: Ali Ali, Rafet Al-Tobasei, Daniela Lourenco, Tim Leeds, Brett Kenney and Mohamed Salem
    Citation: BMC Genomics 2020 21:209
    Content type: Research article Published on:

  19. DNA microarray technology provides us with a first step toward the goal of uncovering gene functions on a genomic scale. In recent years, vast amounts of gene expression data have been collected, much of which...

    Authors: Chunlai Feng, Michihiro Araki, Ryo Kunimoto, Akiko Tamon, Hiroki Makiguchi, Satoshi Niijima, Gozoh Tsujimoto and Yasushi Okuno
    Citation: BMC Genomics 2009 10:411
    Content type: Software Published on:

  20. The ascomycetous family Chaetomiaceae (class Sordariomycetes) includes numerous soilborn, saprophytic, endophytic and pathogenic fungi which can adapt to various growth conditions and living niches by providing a...

    Authors: Marcel Zámocký, Hakim Tafer, Katarína Chovanová, Ksenija Lopandic, Anna Kamlárová and Christian Obinger
    Citation: BMC Genomics 2016 17:763
    Content type: Research article Published on:

  21. Forkhead box O3A (FOXOA3) and apolipoprotein E (APOE) are arguably the strongest gene candidates to influence human exceptional longevity (EL, i.e., being a centenarian), but inconsistency exists among cohorts. E...

    Authors: Noriyuki Fuku, Roberto Díaz-Peña, Yasumichi Arai, Yukiko Abe, Hirofumi Zempo, Hisashi Naito, Haruka Murakami, Motohiko Miyachi, Carlos Spuch, José A. Serra-Rexach, Enzo Emanuele, Nobuyoshi Hirose and Alejandro Lucia
    Citation: BMC Genomics 2017 18(Suppl 8):803
    Content type: Research Published on:

    This article is part of a Supplement: Volume 18 Supplement 8

  23. Transcriptomic studies often require collection of fresh tissues post euthanasia. The chosen euthanasia method might have the potential to induce variations in gene expressions that are unlinked with the exper...

    Authors: B. Chakkingal Bhaskaran, R. Meyermans, W. Gorssen, G. E. Maes, J. Buyse, S. Janssens and N. Buys
    Citation: BMC Genomics 2023 24:769
    Content type: Research Published on:

  24. We have previously sequenced more than 500 kb of the duplicated MHC class I regions in Atlantic salmon. In the IA region we identified the loci for the MHC class I gene Sasa-UBA in addition to a soluble MHC class...

    Authors: Morten F Lukacs, Håvard Harstad, Hege G Bakke, Marianne Beetz-Sargent, Linda McKinnel, Krzysztof P Lubieniecki, Ben F Koop and Unni Grimholt
    Citation: BMC Genomics 2010 11:154
    Content type: Research article Published on:

  25. Cardiac sarco(endo)plasmic reticulum calcium ATPase-2 (SERCA2) plays one of the central roles in myocardial contractility. Both, SERCA2 mRNA and protein are reduced in myocardial infarction (MI), but the corre...

    Authors: Emanuela Boštjančič, Nina Zidar and Damjan Glavač
    Citation: BMC Genomics 2012 13:552
    Content type: Research article Published on:

  26. An important mechanism for gene regulation utilizes small non-coding RNAs called microRNAs (miRNAs). These small RNAs play important roles in tissue development, cell differentiation and proliferation, lipid a...

    Authors: Yang Wang, Tingting Weng, Deming Gou, Zhongming Chen, Narendranath Reddy Chintagari and Lin Liu
    Citation: BMC Genomics 2007 8:29
    Content type: Research article Published on:

  28. The Illumina HumanMethylation450 BeadChip (HM450K) measures the DNA methylation of 485,512 CpGs in the human genome. The technology relies on hybridization of genomic fragments to probes on the chip. However, ...

    Authors: Haroon Naeem, Nicholas C Wong, Zac Chatterton, Matthew K H Hong, John S Pedersen, Niall M Corcoran, Christopher M Hovens and Geoff Macintyre
    Citation: BMC Genomics 2014 15:51
    Content type: Methodology article Published on:

  30. Identification of synthetic lethal interactions in cancer cells could offer promising new therapeutic targets. Large-scale functional genomic screening presents an opportunity to test large numbers of cancer s...

    Authors: Mark Wappett, Austin Dulak, Zheng Rong Yang, Abdullatif Al-Watban, James R. Bradford and Jonathan R. Dry
    Citation: BMC Genomics 2016 17:65
    Content type: Research article Published on:

  31. The mitogen-activated protein kinase (MAPK) family is involved in signal transduction networks that underpin many different biological processes in plants, ranging from development to biotic and abiotic stress...

    Authors: Ravinder K. Goyal, Dan Tulpan, Nora Chomistek, Dianevys González-Peña Fundora, Connor West, Brian E. Ellis, Michele Frick, André Laroche and Nora A. Foroud
    Citation: BMC Genomics 2018 19:178
    Content type: Research article Published on:

  32. The Iso-Seq method of full-length cDNA sequencing is suitable to quantify differentially expressed genes (DEGs), transcripts (DETs) and transcript usage (DTU). However, the higher cost of Iso-Seq relative to R...

    Authors: Yan Ren, Elizabeth Tseng, Timothy P. L. Smith, Stefan Hiendleder, John L. Williams and Wai Yee Low
    Citation: BMC Genomics 2023 24:108
    Content type: Research Published on:

  33. Recent advances in the analysis of high-throughput expression data have led to the development of tools that scaled-up their focus from single-gene to gene set level. For example, the popular Gene Set Enrichme...

    Authors: Lionel Spinelli, Sabrina Carpentier, Frédéric Montañana Sanchis, Marc Dalod and Thien-Phong Vu Manh
    Citation: BMC Genomics 2015 16:814
    Content type: Research article Published on:

  35. Clubroot is an important disease caused by the obligate parasite Plasmodiophora brassicae that infects the Brassicaceae. As a soil-borne pathogen, P. brassicae induces the generation of abnormal tissue in the roo...

    Authors: Solmaz Irani, Brett Trost, Matthew Waldner, Naghabushana Nayidu, Jiangying Tu, Anthony J. Kusalik, Christopher D. Todd, Yangdou Wei and Peta C. Bonham-Smith
    Citation: BMC Genomics 2018 19:23
    Content type: Research article Published on:

  36. Drug resistance in Mycobacterium tuberculosis (MTB) is one of the major challenges in tuberculosis (TB) treatment. However, known mutations cannot explain all of the cases of resistance and little research has fo...

    Authors: Xi Zeng, Jamie Sui-Lam Kwok, Kevin Yi Yang, Kenneth Siu-Sing Leung, Mai Shi, Zhiyuan Yang, Wing-Cheong Yam and Stephen Kwok-Wing Tsui
    Citation: BMC Genomics 2018 19:365
    Content type: Research article Published on:

  37. Spinach is a beneficial annual vegetable species and sensitive to the bolting or early flowering, which causes a large reduction in quality and productivity. Indeed, bolting is an event induced by the coordina...

    Authors: Fatemeh Ghorbani, Reza Abolghasemi, Maryam Haghighi, Nematollah Etemadi, Shui Wang, Marzieh Karimi and Aboozar Soorni
    Citation: BMC Genomics 2021 22:704
    Content type: Research Published on:

  38. Vitamin C (vit C) is an essential dietary nutrient, which is a potent antioxidant, a free radical scavenger and functions as a cofactor in many enzymatic reactions. Vit C is also considered to enhance the immu...

    Authors: Sakshi Dhingra Batra, Malobi Nandi, Kriti Sikri and Jaya Sivaswami Tyagi
    Citation: BMC Genomics 2017 18:252
    Content type: Research article Published on:

  39. Adaptive processes shape the evolution of genomes and the diverse functions of different genomic regions are likely to have an impact on the trajectory and outcome of this evolution. The main underlying hypoth...

    Authors: Paolo Gonthier, Fabiano Sillo, Elisa Lagostina, Angela Roccotelli, Olga Santa Cacciola, Jan Stenlid and Matteo Garbelotto
    Citation: BMC Genomics 2015 16:1107
    Content type: Research article Published on:

  40. Recent studies on co-transformation of the growth regulator, TaGRF4-GIF1 chimera (Growth Regulating Factor 4-GRF Interacting Factor 1), in cultivated wheat varieties (Triticum aestivum), showed improved regenerat...

    Authors: Zhenyu Yang, Meili Zhao, Xiaojie Zhang, Lili Gu, Jian Li, Feng Ming, Meina Wang and Zhicai Wang
    Citation: BMC Genomics 2024 25:543
    Content type: Research Published on:

  41. Despite the economic importance of sugarcane in sugar and bioenergy production, there is not yet a reference genome available. Most of the sugarcane transcriptomic studies have been based on Saccharum officinarum

    Authors: Nam V. Hoang, Agnelo Furtado, Patrick J. Mason, Annelie Marquardt, Lakshmi Kasirajan, Prathima P. Thirugnanasambandam, Frederik C. Botha and Robert J. Henry
    Citation: BMC Genomics 2017 18:395
    Content type: Research article Published on:

  42. Honey bees (Apis mellifera) contribute substantially to the worldwide economy and ecosystem health as pollinators. Pollen is essential to the bee’s diet, providing protein, lipids, and micronutrients. The dramati...

    Authors: Vanessa Corby-Harris, Beryl M Jones, Alexander Walton, Melissa R Schwan and Kirk E Anderson
    Citation: BMC Genomics 2014 15:134
    Content type: Research article Published on:

  43. Bupleurum chinense DC. is a widely used traditional Chinese medicinal plant. Saikosaponins are the major bioactive constituents of B. chinense, but relatively little is known about saikosaponin biosynthesis. In t...

    Authors: Yilian He, Hua Chen, Jun Zhao, Yuxia Yang, Bin Yang, Liang Feng, Yiguan Zhang, Ping Wei, Dabin Hou, Junning Zhao and Ma Yu
    Citation: BMC Genomics 2021 22:839
    Content type: Research Published on:

  44. B-cell chronic lymphocytic leukemia (CLL) is a common type of adult leukemia. It often follows an indolent course and is preceded by monoclonal B-cell lymphocytosis, an asymptomatic condition, however it is no...

    Authors: Panagiotis Georgiadis, Irene Liampa, Dennie G. Hebels, Julian Krauskopf, Aristotelis Chatziioannou, Ioannis Valavanis, Theo M.C.M. de Kok, Jos C.S. Kleinjans, Ingvar A. Bergdahl, Beatrice Melin, Florentin Spaeth, Domenico Palli, R.C.H. Vermeulen, J. Vlaanderen, Marc Chadeau-Hyam, Paolo Vineis…
    Citation: BMC Genomics 2017 18:728
    Content type: Research article Published on:

  45. Spermatogenesis is a complex process characterized by the activation and/or repression of a number of genes in a spatio-temporal manner. Pubertal development in males starts with the onset of the first spermat...

    Authors: Mercedes Blázquez, Paula Medina, Berta Crespo, Ana Gómez and Silvia Zanuy
    Citation: BMC Genomics 2017 18:441
    Content type: Research article Published on:

    The Erratum to this article has been published in BMC Genomics 2017 18:513

  46. Increasingly high amounts of heterogeneous and valuable controlled biomolecular annotations are available, but far from exhaustive and scattered in many databases. Several annotation integration and prediction...

    Authors: Marco Masseroli, Arif Canakoglu and Massimiliano Quigliatti
    Citation: BMC Genomics 2015 16(Suppl 6):S5
    Content type: Research Published on:

    This article is part of a Supplement: Volume 16 Supplement 6

  47. The salmon louse (SL) is an ectoparasitic caligid crustacean infecting salmonid fishes in the marine environment. SL represents one of the major challenges for farming of salmonids, and veterinary intervention...

    Authors: Stanko Skugor, Kevin Alan Glover, Frank Nilsen and Aleksei Krasnov
    Citation: BMC Genomics 2008 9:498
    Content type: Research article Published on:

  49. Populus trichocarpa is an important forest tree species for the generation of lignocellulosic ethanol. Understanding the genomic basis of biomass production and chemical composition of wood is fundamental in supp...

    Authors: Fernando P. Guerra, Haktan Suren, Jason Holliday, James H. Richards, Oliver Fiehn, Randi Famula, Brian J. Stanton, Richard Shuren, Robert Sykes, Mark F. Davis and David B. Neale
    Citation: BMC Genomics 2019 20:875
    Content type: Research article Published on:

  50. Genome-wide association studies have identified thousands of SNP variants associated with hundreds of phenotypes. For most associations the causal variants and the molecular mechanisms underlying pathogenesis ...

    Authors: Alida S D Kindt, Pau Navarro, Colin A M Semple and Chris S Haley
    Citation: BMC Genomics 2013 14:108
    Content type: Research article Published on:

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