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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Walnuts (Juglans regia L.) are known for their nutrient-rich nuts and are one of the important economic tree species in the world. However, due to global warming and soil salinization, walnuts suffer from various...

    Authors: Xuejiao Liu, Feiyan Yu, Guiyan Yang, Xiaoqiang Liu and Shaobing Peng
    Citation: BMC Genomics 2022 23:190
    Content type: Research Published on:

  2. Mapping genetic interactions is essential for determining gene function and defining novel biological pathways. We report a simple to use CRISPR interference (CRISPRi) based platform, compatible with Fluoresce...

    Authors: Alina Guna, Katharine R. Page, Joseph M. Replogle, Theodore K. Esantsi, Maxine L. Wang, Jonathan S. Weissman and Rebecca M. Voorhees
    Citation: BMC Genomics 2023 24:651
    Content type: Research Published on:

  3. The mango belongs to the genus Mangifera, consisting of numerous tropical fruiting trees in the flowering plant family, Anacardiaceae. Postharvest treatment by hot water brushing (HWB) for 15–20 s was introduced ...

    Authors: Neta Luria, Noa Sela, Mor Yaari, Oleg Feygenberg, Ilana Kobiler, Amnon Lers and Dov Prusky
    Citation: BMC Genomics 2014 15:957
    Content type: Research article Published on:

  4. Anguillid eels spend their larval period as leptocephalus larvae that have a unique and specialized body form with leaf-like and transparent features, and they undergo drastic metamorphosis to juvenile glass e...

    Authors: Ryusuke Sudo, Taiga Asakura, Takashi Ishikawa, Rui Hatakeyama, Atushi Fujiwara, Komaki Inoue, Keiichi Mochida and Kazuharu Nomura
    Citation: BMC Genomics 2024 25:585
    Content type: Research Published on:

  5. The availability of chromosome-scale genome assemblies is fundamentally important to advance genetics and breeding in crops, as well as for evolutionary and comparative genomics. The improvement of long-read s...

    Authors: Istvan Nagy, Elisabeth Veeckman, Chang Liu, Michiel Van Bel, Klaas Vandepoele, Christian Sig Jensen, Tom Ruttink and Torben Asp
    Citation: BMC Genomics 2022 23:505
    Content type: Research Published on:

  6. Beauveria bassiana (B. bassiana) is a famous entomopathogenic fungus that could parasitize on hundreds of insect species, which are being used as an environmentally friendly mycoinsecticide. Nevertheless, the pos...

    Authors: Zhengkun Zhang, Yang Lu, Wenjing Xu, Li Sui, Qian Du, Yangzhou Wang, Yu Zhao and Qiyun Li
    Citation: BMC Genomics 2020 21:451
    Content type: Research article Published on:

  7. Halomicronema hongdechloris was the first cyanobacterium to be identified that produces chlorophyll (Chl) f. It contains Chl a and uses phycobiliproteins as its major light-harvesting components under white light...

    Authors: Min Chen, Miguel A. Hernandez-Prieto, Patrick C. Loughlin, Yaqiong Li and Robert D. Willows
    Citation: BMC Genomics 2019 20:207
    Content type: Research article Published on:

  8. Anaerobic germination tolerance is an important trait for direct-seeded rice varieties. Understanding the genetic basis of anaerobic germination is a key for breeding direct-seeded rice varieties.

    Authors: Jing Yang, Kai Sun, Dongxiu Li, Lixin Luo, Yongzhu Liu, Ming Huang, Guili Yang, Hong Liu, Hui Wang, Zhiqiang Chen and Tao Guo
    Citation: BMC Genomics 2019 20:355
    Content type: Research article Published on:

  9. It has recently emerged that common epithelial cancers such as breast cancers have fusion genes like those in leukaemias. In a representative breast cancer cell line, ZR-75-30, we searched for fusion genes, by...

    Authors: Ina Schulte, Elizabeth M Batty, Jessica CM Pole, Katherine A Blood, Steven Mo, Susanna L Cooke, Charlotte Ng, Kevin L Howe, Suet-Feung Chin, James D Brenton, Carlos Caldas, Karen D Howarth and Paul AW Edwards
    Citation: BMC Genomics 2012 13:719
    Content type: Research article Published on:

  10. As an important group of the multidrug efflux transporter family, the multidrug and toxic compound extrusion (MATE) family has a wide range of functions and is distributed in all kingdoms of living organisms. ...

    Authors: Weihan Zhang, Liao Liao, Jinsheng Xu, Yuepeng Han and Li Li
    Citation: BMC Genomics 2021 22:632
    Content type: Research article Published on:

  11. To gain insight into the branching order of the five main lineages currently recognized in the green algal class Chlorophyceae and to expand our understanding of chloroplast genome evolution, we have undertake...

    Authors: Jean-Simon Brouard, Christian Otis, Claude Lemieux and Monique Turmel
    Citation: BMC Genomics 2008 9:290
    Content type: Research article Published on:

  12. Genes encoded in vertebrate mitochondrial DNAs are transcribed as a polycistronic transcript for both strands, which is later processed into individual mRNAs, rRNAs and tRNAs, followed by modifications, such a...

    Authors: Yao Sun, Masaki Kurisaki, Yasuyuki Hashiguchi and Yoshinori Kumazawa
    Citation: BMC Genomics 2017 18:665
    Content type: Research article Published on:

  13. A pool of small RNA fragments (RFs) derived from diverse cellular RNAs has recently emerged as a rich source of functionally relevant molecules. Although their formation and accumulation has been connected to ...

    Authors: Paulina Jackowiak, Anna Hojka-Osinska, Anna Philips, Agnieszka Zmienko, Lucyna Budzko, Patrick Maillard, Agata Budkowska and Marek Figlerowicz
    Citation: BMC Genomics 2017 18:502
    Content type: Research article Published on:

  14. Sunflower is an important oilseed crop domesticated in North America approximately 4000 years ago. During the last century, oil content in sunflower was under strong selection. Further improvement of oil prope...

    Authors: Alina I. Chernova, Rim F. Gubaev, Anupam Singh, Katrina Sherbina, Svetlana V. Goryunova, Elena U. Martynova, Denis V. Goryunov, Stepan V. Boldyrev, Anna A. Vanyushkina, Nikolay A. Anikanov, Elena A. Stekolshchikova, Ekaterina A. Yushina, Yakov N. Demurin, Zhanna M. Mukhina, Vera A. Gavrilova, Irina N. Anisimova…
    Citation: BMC Genomics 2021 22:505
    Content type: Research article Published on:

  15. Transcriptome sequencing using next-generation sequencing platforms will soon be competing with DNA microarray technologies for global gene expression analysis. As a preliminary evaluation of these promising t...

    Authors: Shrinivasrao P Mane, Clive Evans, Kristal L Cooper, Oswald R Crasta, Otto Folkerts, Stephen K Hutchison, Timothy T Harkins, Danielle Thierry-Mieg, Jean Thierry-Mieg and Roderick V Jensen
    Citation: BMC Genomics 2009 10:264
    Content type: Research article Published on:

  16. Due to excessive antibiotic use, drug-resistant Mycobacterium tuberculosis has become a serious public health threat and a major obstacle to disease control in many countries. To better understand the evolution o...

    Authors: Fei Liu, Yongfei Hu, Qi Wang, Hong Min Li, George F Gao, Cui Hua Liu and Baoli Zhu
    Citation: BMC Genomics 2014 15:469
    Content type: Research article Published on:

  17. Respiratory syncytial virus (RSV) is an important cause of lower respiratory tract infection in young children. The degree of disease severity is determined by the host response to infection. Lung macrophages ...

    Authors: Laxmi Iyer Ravi, Liang Li, Richard Sutejo, Hui Chen, Pui San Wong, Boon Huan Tan and Richard J Sugrue
    Citation: BMC Genomics 2013 14:190
    Content type: Research article Published on:

  19. Despite the frequent isolation of Salmonella enterica sub. enterica serovars Derby and Mbandaka from livestock in the UK and USA little is known about the biological processes maintaining their prevalence. Statis...

    Authors: Matthew R Hayward, Vincent AA Jansen and Martin J Woodward
    Citation: BMC Genomics 2013 14:365
    Content type: Research article Published on:

  20. Lactobacillus oligofermentans has been mostly isolated from cold-stored packaged meat products in connection with their spoilage, but its precise role in meat spoilage is unknown. It b...

    Authors: Margarita Andreevskaya, Per Johansson, Elina Jääskeläinen, Tanja Rämö, Jarmo Ritari, Lars Paulin, Johanna Björkroth and Petri Auvinen
    Citation: BMC Genomics 2016 17:539
    Content type: Research article Published on:

  21. Nitrogen fixing bacteria isolated from hot arid areas in Asia, Africa and America but from diverse leguminous plants have been recently identified as belonging to a possible new species of Ensifer (Sinorhizobium)...

    Authors: Antoine Le Quéré, Nisha Tak, Hukam Singh Gehlot, Celine Lavire, Thibault Meyer, David Chapulliot, Sonam Rathi, Ilham Sakrouhi, Guadalupe Rocha, Marine Rohmer, Dany Severac, Abdelkarim Filali-Maltouf and Jose-Antonio Munive
    Citation: BMC Genomics 2017 18:85
    Content type: Research article Published on:

  22. Papain-like cysteine proteases (PLCPs), a large group of cysteine proteases structurally related to papain, play important roles in plant development, senescence, and defense responses. Papain, the first cyste...

    Authors: Juan Liu, Anupma Sharma, Marie Jamille Niewiara, Ratnesh Singh, Ray Ming and Qingyi Yu
    Citation: BMC Genomics 2018 19:26
    Content type: Research article Published on:

  23. Gene regulation is dynamic across cellular conditions and disease subtypes. From the aspect of regulation under modulation, regulation strength between a pair of genes can be modulated by (dependent on) expres...

    Authors: Yu-Chiao Chiu, Chin-Ting Wu, Tzu-Hung Hsiao, Yi-Pin Lai, Chuhsing Kate Hsiao, Yidong Chen and Eric Y Chuang
    Citation: BMC Genomics 2015 16(Suppl 7):S19
    Content type: Research Published on:

    This article is part of a Supplement: Volume 16 Supplement 7

  24. Many species of the genus Prevotella are pathogens that cause oral diseases. Prevotella intermedia is known to cause various oral disorders e.g. periodontal disease, periapical periodontitis and noma as well as c...

    Authors: Yunfeng Ruan, Lu Shen, Yan Zou, Zhengnan Qi, Jun Yin, Jie Jiang, Liang Guo, Lin He, Zijiang Chen, Zisheng Tang and Shengying Qin
    Citation: BMC Genomics 2015 16:122
    Content type: Research article Published on:

  25. Social amoebae are lower eukaryotes that inhabit the soil. They are characterized by the construction of a starvation-induced multicellular fruiting body with a spore ball and supportive stalk. In most species...

    Authors: Hideko Urushihara, Hidekazu Kuwayama, Kensuke Fukuhara, Takehiko Itoh, Hiroshi Kagoshima, Tadasu Shin-I, Atsushi Toyoda, Kazuyo Ohishi, Tateaki Taniguchi, Hideki Noguchi, Yoko Kuroki, Takashi Hata, Kyoko Uchi, Kurato Mohri, Jason S King, Robert H Insall…
    Citation: BMC Genomics 2015 16:80
    Content type: Research article Published on:

  26. An evolutionary model using diploid and allotetraploid cotton species identified 80 % of non-coding transcripts in allotetraploid cotton as being uniquely activated in comparison with its diploid ancestors. Th...

    Authors: Luyao Wang, Jin Han, Kening Lu, Menglin Li, Mengtao Gao, Zeyi Cao, Ting Zhao, Xue Chen, Xiaoyuan Tao, Quanjia Chen and Xueying Guan
    Citation: BMC Genomics 2021 22:443
    Content type: Research article Published on:

  27. Listeria monocytogenes consists of four lineages that occupy a wide variety of ecological niches. Sequence type (ST) 87 (serotype 1/2b), belonging to lineage I, is one of the most common STs isolated from food pr...

    Authors: Yan Wang, Lijuan Luo, Qun Li, Hong Wang, Yiqian Wang, Hui Sun, Jianguo Xu, Ruiting Lan and Changyun Ye
    Citation: BMC Genomics 2019 20:1014
    Content type: Research article Published on:

  28. The Portuguese oyster Crassostrea angulata, a bivalve of significant economic and ecological importance, has faced a decline in both production and natural populations due to pathologies, climate change, and anth...

    Authors: Catarina Anjos, Daniel Duarte, Elvira Fatsini, Domitília Matias and Elsa Cabrita
    Citation: BMC Genomics 2024 25:591
    Content type: Research Published on:

  30. The classical C2H2 zinc finger domain is involved in a wide range of functions and can bind to DNA, RNA and proteins. The comparison of zinc finger proteins in several eukaryotes has shown that there is a lot ...

    Authors: Claudia C Englbrecht, Heiko Schoof and Siegfried Böhm
    Citation: BMC Genomics 2004 5:39
    Content type: Research article Published on:

  31. In this study, differential gene expression analysis using complementary DNA (cDNA) libraries has been improved. Firstly by the introduction of an accurate method of assigning Expressed Sequence Tags (ESTs) to...

    Authors: John MJ Herbert, Dov Stekel, Sharon Sanderson, Victoria L Heath and Roy Bicknell
    Citation: BMC Genomics 2008 9:153
    Content type: Research article Published on:

  32. Pichia pastoris has emerged as an important alternative host for producing recombinant biopharmaceuticals, owing to its high cultivation density, low host cell protein burden, and the ...

    Authors: Kerry R. Love, Kartik A. Shah, Charles A. Whittaker, Jie Wu, M. Catherine Bartlett, Duanduan Ma, Rachel L. Leeson, Margaret Priest, Jonathan Borowsky, Sarah K. Young and J. Christopher Love
    Citation: BMC Genomics 2016 17:550
    Content type: Research article Published on:

    The Erratum to this article has been published in BMC Genomics 2016 17:762

  33. A seventh order of methanogens, the Methanomassiliicoccales, has been identified in diverse anaerobic environments including the gastrointestinal tracts (GIT) of humans and other animals and may contribute sig...

    Authors: Guillaume Borrel, Nicolas Parisot, Hugh MB Harris, Eric Peyretaillade, Nadia Gaci, William Tottey, Olivier Bardot, Kasie Raymann, Simonetta Gribaldo, Pierre Peyret, Paul W O’Toole and Jean-François Brugère
    Citation: BMC Genomics 2014 15:679
    Content type: Research article Published on:

  34. Plant pathogenic isolates of Rhizoctonia solani anastomosis group 1-intraspecific group IA (AG1-IA) infect a wide range of crops causing diseases such as rice sheath blight (ShB). ShB has become a serious disease...

    Authors: Da-Young Lee, Jongbum Jeon, Ki-Tae Kim, Kyeongchae Cheong, Hyeunjeong Song, Gobong Choi, Jaeho Ko, Stephen O. Opiyo, James C. Correll, Shimin Zuo, Sheshu Madhav, Guo-Liang Wang and Yong-Hwan Lee
    Citation: BMC Genomics 2021 22:242
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2021 22:306

  35. Infectious Salmon Anaemia virus (ISAV) is an orthomyxovirus responsible for large losses in Atlantic salmon (Salmo salar) aquaculture. Current available treatments and vaccines are not fully effective, and theref...

    Authors: Ophélie Gervais, Athina Papadopoulou, Remi Gratacap, Borghild Hillestad, Alan E. Tinch, Samuel A. M. Martin, Ross D. Houston and Diego Robledo
    Citation: BMC Genomics 2022 23:775
    Content type: Research Published on:

  36. The Streptococcus Anginosus Group (SAG) represents three closely related species of the viridans group streptococci recognized as commensal bacteria of the oral, gastrointestinal and urogenital tracts. The SAG...

    Authors: Adam B Olson, Heather Kent, Christopher D Sibley, Margot E Grinwis, Philip Mabon, Claude Ouellette, Shari Tyson, Morag Graham, Shaun D Tyler, Gary Van Domselaar, Michael G Surette and Cindi R Corbett
    Citation: BMC Genomics 2013 14:895
    Content type: Research article Published on:

  37. Sinoatrial Node (SAN) is part of the cardiac conduction system, which controls the rhythmic contraction of the vertebrate heart. The SAN consists of a specialized pacemaker cell population that has the potenti...

    Authors: Rashid Minhas, Henry Loeffler-Wirth, Yusra H. Siddiqui, Tomasz Obrębski, Shikha Vashisht, Karim Abu Nahia, Alexandra Paterek, Angelika Brzozowska, Lukasz Bugajski, Katarzyna Piwocka, Vladimir Korzh, Hans Binder and Cecilia Lanny Winata
    Citation: BMC Genomics 2021 22:715
    Content type: Research article Published on:

  38. Genomic rearrangements in cancer cells can create fusion genes that encode chimeric proteins or alter the expression of coding and non-coding RNAs. In some cancer types, fusions involving specific kinases are ...

    Authors: Völundur Hafstað, Jari Häkkinen, Malin Larsson, Johan Staaf, Johan Vallon-Christersson and Helena Persson
    Citation: BMC Genomics 2023 24:783
    Content type: Research Published on:

  39. Purple carrots accumulate large quantities of anthocyanins in their roots and leaves. These flavonoid pigments possess antioxidant activity and are implicated in providing health benefits. Informative, saturat...

    Authors: Pablo F Cavagnaro, Massimo Iorizzo, Mehtap Yildiz, Douglas Senalik, Joshua Parsons, Shelby Ellison and Philipp W Simon
    Citation: BMC Genomics 2014 15:1118
    Content type: Research article Published on:

  40. The square halophilic archaeon Haloquadratum walsbyi dominates NaCl-saturated and MgCl2 enriched aquatic ecosystems, which imposes a serious desiccation stress, caused by the extremely low water activity. The gen...

    Authors: Henk Bolhuis, Peter Palm, Andy Wende, Michaela Falb, Markus Rampp, Francisco Rodriguez-Valera, Friedhelm Pfeiffer and Dieter Oesterhelt
    Citation: BMC Genomics 2006 7:169
    Content type: Research article Published on:

  42. Meat and egg-type chickens have been selected for several generations for different traits. Artificial and natural selection for different phenotypes can change frequency of genetic variants, leaving particula...

    Authors: Clarissa Boschiero, Gabriel Costa Monteiro Moreira, Almas Ara Gheyas, Thaís Fernanda Godoy, Gustavo Gasparin, Pilar Drummond Sampaio Corrêa Mariani, Marcela Paduan, Aline Silva Mello Cesar, Mônica Corrêa Ledur and Luiz Lehmann Coutinho
    Citation: BMC Genomics 2018 19:83
    Content type: Research article Published on:

  43. Bombyx mori nucleopolyhedrosis virus (BmNPV) is a major pathogen that threatens the sustainability of the sericultural industry. DNA methylation is a widespread gene regulation mode in epigenetics, which plays an...

    Authors: Haoling Huang, Ping Wu, Shaolun Zhang, Qi Shang, Haotong Yin, Qirui Hou, Jinbo Zhong and Xijie Guo
    Citation: BMC Genomics 2019 20:736
    Content type: Research article Published on:

  44. Hip dysplasia and osteoarthritis continue to be prevalent problems in veterinary and human medicine. Canine hip dysplasia is particularly problematic as it massively affects several large-sized breeds and can ...

    Authors: Lea Mikkola, Saila Holopainen, Tiina Pessa-Morikawa, Anu K. Lappalainen, Marjo K. Hytönen, Hannes Lohi and Antti Iivanainen
    Citation: BMC Genomics 2019 20:1027
    Content type: Research article Published on:

  45. The reconstruction of gene regulatory networks from high-throughput "omics" data has become a major goal in the modelling of living systems. Numerous approaches have been proposed, most of which attempt only "...

    Authors: Sidath Randeni Kadupitige, Kin Chun Leung, Julia Sellmeier, Jane Sivieng, Daniel R Catchpoole, Michael E Bain and Bruno A Gaëta
    Citation: BMC Genomics 2009 10(Suppl 3):S17
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 10 Supplement 3

  46. Chronic kidney disease (CKD) is a complex disorder that has become a high prevalence global health problem, with diabetes being its predominant pathophysiologic driver. Autosomal genetic variation only explain...

    Authors: Marisa Cañadas-Garre, Blanca Baños-Jaime, Joaquín J. Maqueda, Laura J. Smyth, Ruaidhri Cappa, Ryan Skelly, Claire Hill, Eoin P. Brennan, Ross Doyle, Catherine Godson, Alexander P. Maxwell and Amy Jayne McKnight
    Citation: BMC Genomics 2024 25:576
    Content type: Research Published on:

  47. The COP9 signalosome, composed of eight subunits, is implicated in cancer genetics with its deneddylase activity to modulate cellular concentration of oncogenic proteins such as IkB and TGFβ. However, its func...

    Authors: Christina A. Wicker and Tadahide Izumi
    Citation: BMC Genomics 2016 17:983
    Content type: Research article Published on:

  49. Transcription factors, regulating the expression inventory of a cell, interact with its respective DNA subjugated by a specific recognition pattern, which if well exploited may ensure targeted genome engineeri...

    Authors: Shayoni Dutta, Yoshita Agrawal, Aditi Mishra, Jaspreet Kaur Dhanjal and Durai Sundar
    Citation: BMC Genomics 2015 16(Suppl 12):S5
    Content type: Research Published on:

    This article is part of a Supplement: Volume 16 Supplement 12

  50. The eyes and skin are obvious retinoid target organs. Vitamin A deficiency causes night blindness and retinoids are widely used to treat acne and psoriasis. However, more than 90% of total body retinol is stor...

    Authors: Yuqi He, Lei Gong, Yaping Fang, Qi Zhan, Hui-Xin Liu, Yanliu Lu, Grace L Guo, Lois Lehman-McKeeman, Jianwen Fang and Yu-Jui Yvonne Wan
    Citation: BMC Genomics 2013 14:575
    Content type: Research article Published on:

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