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  1. Larch is an important component of northern forests and a major cultivated tree species in restoration of forest cover using improved seed material. In recent years, the continuous low seed production has seve...

    Authors: Junfei Hao, Daixi Xu, Chen Wang, Qing Cao, Qingrong Zhao, Miaomiao Xie, Hanguo Zhang and Lei Zhang
    Citation: BMC Genomics 2024 25:288
  2. Antimicrobial resistance (AMR) remains a significant global health threat particularly impacting low- and middle-income countries (LMICs). These regions often grapple with limited healthcare resources and acce...

    Authors: Mike Nsubuga, Ronald Galiwango, Daudi Jjingo and Gerald Mboowa
    Citation: BMC Genomics 2024 25:287
  3. Encystment is an important survival strategy extensively employed by microbial organisms to survive unfavorable conditions. Single-celled ciliated protists (ciliates) are popular model eukaryotes for studying ...

    Authors: Didi Jin, Chao Li, Xiao Chen, Yurui Wang, Khaled A. S. Al-Rasheid, Naomi A. Stover, Chen Shao and Tengteng Zhang
    Citation: BMC Genomics 2024 25:286
  4. Climate change is a threat to sustainable livestock production and livelihoods in the tropics. It has adverse impacts on feed and water availability, disease prevalence, production, environmental temperature, ...

    Authors: Fasil Getachew Kebede, Martijn F.L. Derks, Tadelle Dessie, Olivier Hanotte, Carolina Pita Barros, Richard P.M.A. Crooijmans, Hans Komen and John W.M. Bastiaansen
    Citation: BMC Genomics 2024 25:284
  5. MYB transcription factors play an extremely important regulatory role in plant responses to stress and anthocyanin synthesis. Cloning of potato StMYB-related genes can provide a theoretical basis for the genetic ...

    Authors: Bi-Cong Chen, Xiao-Jie Wu, Qiu-Ju Dong and Ji-Ping Xiao
    Citation: BMC Genomics 2024 25:283
  6. Blood transcriptomic analysis is widely used to provide a detailed picture of a physiological state with potential outcomes for applications in diagnostics and monitoring of the immune response to vaccines. Ho...

    Authors: Elody Orcel, Hayat Hage, May Taha, Noémie Boucher, Emilie Chautard, Virginie Courtois and Adrien Saliou
    Citation: BMC Genomics 2024 25:282
  7. Drought stress can significantly affect plant growth, development, and yield. Fewer comparative studies have been conducted between different species of pines, particularly involving Pinus yunnanensis var. pygmae...

    Authors: Feng Xiao, Yang Zhao, Xiurong Wang, Xueyan Jian and Yao Yang
    Citation: BMC Genomics 2024 25:281
  8. Atrial fibrillation (AF) is a prevalent arrhythmic condition resulting in increased stroke risk and is associated with high mortality. Electrolyte imbalance can increase the risk of AF, where the relationship ...

    Authors: Yang Wu, Xiang-Jun Kong, Ying-Ying Ji, Jun Fan, Cheng-Cheng Ji, Xu-Miao Chen, Yue-Dong Ma, An-Li Tang, Yun-Jiu Cheng and Su-Hua Wu
    Citation: BMC Genomics 2024 25:280
  9. The majority of bat species have developed remarkable echolocation ability, especially for the laryngeally echolocating bats along with high-frequency hearing. Adaptive evolution has been widely detected for t...

    Authors: Xintong Li, Hui Wang, Xue Wang, Mingyue Bao, Ruyi Sun, Wentao Dai, Keping Sun and Jiang Feng
    Citation: BMC Genomics 2024 25:279
  10. There is an ongoing process in which mitochondrial sequences are being integrated into the nuclear genome. The importance of these sequences has already been revealed in cancer biology, forensic, phylogenetic ...

    Authors: Bálint Biró, Zoltán Gál, Zsófia Fekete, Eszter Klecska and Orsolya Ivett Hoffmann
    Citation: BMC Genomics 2024 25:278
  11. Indian jointvetch (Aeschynomene indica) is a common and pernicious weed found in the upland direct-seeding rice fields in the lower reaches of the Yangtze River in China. However, there are few reports on the deg...

    Authors: Yuan Gao, TianYu Chen, Jiaqi Long, Guohui Shen and Zhihui Tian
    Citation: BMC Genomics 2024 25:277
  12. Plant diseases caused by pathogenic fungi are devastating. However, commonly used fungicides are harmful to the environment, and some are becoming ineffective due to fungal resistance. Therefore, eco-friendly ...

    Authors: Ee Li, Kaiquan Liu, Shuhan Yang, Ling Li, Kun Ran, Xiaoli Sun, Jie Qu, Li Zhao, Yuxiu Xin, Feng Zhu, Jingfang Ma, Feng Song and Zhenghua Li
    Citation: BMC Genomics 2024 25:276
  13. The spread of Popillia japonica in non-native areas (USA, Canada, the Azores islands, Italy and Switzerland) poses a significant threat to agriculture and horticulture, as well as to endemic floral biodiversity, ...

    Authors: Claudio Cucini, Sara Boschi, Rebecca Funari, Elena Cardaioli, Nicola Iannotti, Giovanni Marturano, Francesco Paoli, Mirella Bruttini, Antonio Carapelli, Francesco Frati and Francesco Nardi
    Citation: BMC Genomics 2024 25:275
  14. Tuber starch and steroidal glycoalkaloid (SGA)-related traits have been consistently prioritized in potato breeding, while allelic variation pattern of genes that underlie these traits is less explored.

    Authors: Hongbo Li, Matthijs Brouwer, Elena Del Pup, Natascha van Lieshout, Richard Finkers, Christian W. B. Bachem and Richard G. F. Visser
    Citation: BMC Genomics 2024 25:274
  15. There are two major genetic types of Epstein-Barr Virus (EBV): type 1 (EBV-1) and type 2 (EBV-2). EBV functions by manipulating gene expression in host B cells, using virus-encoded gene regulatory proteins inc...

    Authors: Kenyatta C. M. F. Viel, Sreeja Parameswaran, Omer A. Donmez, Carmy R. Forney, Matthew R. Hass, Cailing Yin, Sydney H. Jones, Hayley K. Prosser, Arame A. Diouf, Olivia E. Gittens, Lee E. Edsall, Xiaoting Chen, Hope Rowden, Katelyn A. Dunn, Rui Guo, Andrew VonHandorf…
    Citation: BMC Genomics 2024 25:273
  16. Mung bean (Vigna radiata (L.) Wilczek), is an important pulse crop in the global south. Early flowering and maturation are advantageous traits for adaptation to northern and southern latitudes. This study investi...

    Authors: Kevin O. Chiteri, Ashlyn Rairdin, Kulbir Sandhu, Sven Redsun, Andrew Farmer, Jamie A. O’Rourke, Steven B. Cannon and Arti Singh
    Citation: BMC Genomics 2024 25:270
  17. Polymorphisms of Plasmodium falciparum chloroquine resistance transporter (pfcrt), Plasmodium falciparum multi-drug resistance 1 (pfmdr1) and Plasmodium falciparum kelch 13-propeller (pfk13) genes are accepted as...

    Authors: Phunuch Muhamad, Papichaya Phompradit, Wanna Chaijaroenkul and Kesara Na-Bangchang
    Citation: BMC Genomics 2024 25:269
  18. The core regulation of the abscisic acid (ABA) signalling pathway comprises the multigenic families PYL, PP2C, and SnRK2. In this work, we conducted a genome-wide study of the components of these families in Cucu...

    Authors: Jessica Iglesias-Moya, Álvaro Benítez, María Segura, Sonsoles Alonso, Dolores Garrido, Cecilia Martínez and Manuel Jamilena
    Citation: BMC Genomics 2024 25:268
  19. In every omics experiment, genes or their products are identified for which even state of the art tools are unable to assign a function. In the biotechnology chassis organism Pseudomonas putida, these proteins of...

    Authors: Steven Tavis and Robert L. Hettich
    Citation: BMC Genomics 2024 25:267
  20. Over the last decades, it was subject of many studies to investigate the genomic connection of milk production and health traits in dairy cattle. Thereby, incorporating functional information in genomic analys...

    Authors: Helen Schneider, Ana-Marija Krizanac, Clemens Falker-Gieske, Johannes Heise, Jens Tetens, Georg Thaller and Jörn Bennewitz
    Citation: BMC Genomics 2024 25:265
  21. Escherichia coli, a ubiquitous inhabitant of the gut microbiota, has been recognized as an indicator of fecal contamination and a potential reservoir for antibiotic resistance genes. Its prevalence in drinking wa...

    Authors: Oluwaseyi Samuel Olanrewaju, Lesego G Molale-Tom, Rinaldo K Kritzinger and Cornelius Carlos Bezuidenhout
    Citation: BMC Genomics 2024 25:263
  22. Plague, as an ancient zoonotic disease caused by Yersinia pestis, has brought great disasters. The natural plague focus of Marmota himalayana in the Qinghai-Tibet Plateau is the largest, which has been constantly...

    Authors: Ying Ma, Pengbo Liu, Ziyan Li, Yujuan Yue, Yanmei Zhao, Jian He, Jiaxin Zhao, Xiuping Song, Jun Wang, Qiyong Liu and Liang Lu
    Citation: BMC Genomics 2024 25:262
  23. In this study, we conducted an assembly and analysis of the organelle genomes of Aconitum carmichaelii. Our investigation encompassed the examination of organelle genome structures, gene transfer events, and the ...

    Authors: Rongxiang Zhang, Niyan Xiang, Changjiang Qian, Shuwen Liu, Yuemei Zhao, Guiyu Zhang, Pei Wei, Jianfeng Li and Tao Yuan
    Citation: BMC Genomics 2024 25:260
  24. Sugar Will Eventually be Exported Transporter (SWEET) proteins are highly conserved in various organisms and play crucial roles in sugar transport processes. However, SWEET proteins in peanuts, an essential le...

    Authors: Yang Li, Mengjia Fu, Jiaming Li, Jie Wu, Zhenyang Shua, Tiantian Chen, Wen Yao and Dongxin Huai
    Citation: BMC Genomics 2024 25:259
  25. The interactions between the rumen microbiota and the host are crucial for the digestive and absorptive processes of ruminants, and they are heavily influenced by the climatic conditions of their habitat. Owin...

    Authors: Cheng Pan, Haiyan Li, Shehr Bano Mustafa, Cuomu Renqing, Zhenzhen Zhang, Jingjing Li, Tianzeng Song, Gaofu Wang and Wangsheng Zhao
    Citation: BMC Genomics 2024 25:258
  26. Congenital heart defects (CHD) are structural defects of the heart affecting approximately 1% of newborns. They exhibit low penetrance and non-Mendelian patterns of inheritance as varied and complex traits. Wh...

    Authors: Martin Broberg, Minna Ampuja, Samuel Jones, Tiina Ojala, Otto Rahkonen, Riikka Kivelä, James Priest, Aarno Palotie, Hanna M. Ollila and Emmi Helle
    Citation: BMC Genomics 2024 25:256
  27. Drug addiction is a serious problem worldwide and is influenced by genetic factors. The present study aimed to investigate the association between genetics and drug addiction among Han Chinese.

    Authors: Hanli Xu, Yulin Kang, Tingming Liang, Sifen Lu, Xiaolin Xia, Zuhong Lu, Lingming Hu, Li Guo, Lishu Zhang, Jiaqiang Huang, Lin Ye, Peiye Jiang, Yi Liu, Li Xinyi, Jin Zhai, Zi Wang…
    Citation: BMC Genomics 2024 25:255
  28. Neddylation, an important post-translational modification (PTM) of proteins, plays a crucial role in follicular development. MLN4924 is a small-molecule inhibitor of the neddylation-activating enzyme (NAE) tha...

    Authors: Mengjuan Chen, Yuqing Liu, Mingzhong Zuo, Meina Zhang, Zhitong Wang, Xin Li, Dongdong Yuan, Huifen Xu, Guangqing Yu and Ming Li
    Citation: BMC Genomics 2024 25:254
  29. The genus Pseudoroegneria (Nevski) Löve (Triticeae, Poaceae), whose genome symbol was designed as “St”, accounts for more than 60% of perennial Triticeae species. The diploid species Psudoroegneria libanotica ...

    Authors: Xingguang Zhai, Dandan Wu, Chen Chen, Xunzhe Yang, Shaobo Cheng, Lina Sha, Shuhan Deng, Yiran Cheng, Xing Fan, Houyang Kang, Yi Wang, Dengcai Liu, Yonghong Zhou and Haiqin Zhang
    Citation: BMC Genomics 2024 25:253
  30. The SnRK (sucrose non-fermentation-related protein kinase) plays an important role in regulating various signals in plants. However, as an important bamboo shoot and wood species, the response mechanism of PheSnR...

    Authors: Huifang Zheng, Yali Xie, Changhong Mu, Wenlong Cheng, Yucong Bai and Jian Gao
    Citation: BMC Genomics 2024 25:252
  31. The Illumina family of Infinium Methylation BeadChip microarrays has been widely used over the last 15 years for genome-wide DNA methylation profiling, including large-scale and population-based studies, due t...

    Authors: Timothy J. Peters, Braydon Meyer, Lauren Ryan, Joanna Achinger-Kawecka, Jenny Song, Elyssa M. Campbell, Wenjia Qu, Shalima Nair, Phuc Loi-Luu, Phillip Stricker, Elgene Lim, Clare Stirzaker, Susan J. Clark and Ruth Pidsley
    Citation: BMC Genomics 2024 25:251
  32. Immunotherapy is a practical therapeutic approach in breast cancer (BRCA), and the role of FLI1 in immune regulation has gradually been unveiled. However, the specific role of FLI1 in BRCA was conflicted; thus...

    Authors: Jianying Pei, Ying Peng, Kexin Ma, Chunyan Lan, Tingting Zhang, Yan Li, Xiaofang Chen and Huafang Gao
    Citation: BMC Genomics 2024 25:250
  33. Iron plays a crucial role in the growth of Mycobacterium tuberculosis (M. tuberculosis). However, the precise regulatory mechanism governing this system requires further elucidation. Additionally, limited studies...

    Authors: Yameng Li, Yifan Li, Yao Liu, Xianglong Kong, Ningning Tao, Yawei Hou, Tingting Wang, Qilin Han, Yuzhen Zhang, Fei Long and Huaichen Li
    Citation: BMC Genomics 2024 25:249
  34. Quality traits are essential determinants of consumer preferences. Dioscorea alata (Greater Yam), is a starchy tuber crop in tropical regions. However, a comprehensive understanding of the genetic basis underlyin...

    Authors: Ana Paula Zotta Mota, Komivi Dossa, Mathieu Lechaudel, Denis Cornet, Pierre Mournet, Sylvain Santoni, David Lopez and Hana Chaïr
    Citation: BMC Genomics 2024 25:248
  35. Ampelopsideae J. Wen & Z.L. Nie is a small-sized tribe of Vitaceae Juss., including ca. 47 species from four genera showing a disjunct distribution worldwide across all the continents except Antarctica. There ...

    Authors: Lei Zhang, Ying Meng, Da Wang, Guan-Hao He, Jun-Ming Zhang, Jun Wen and Ze-Long Nie
    Citation: BMC Genomics 2024 25:247
  36. Cyclospora cayetanensis is a protozoan parasite that causes intestinal illness in humans worldwide. Despite its global distribution, most genomic data for C. cayetanensis has been obtained from isolates collected...

    Authors: Monica Santin, Aleksey Molokin, Guadalupe E. Orozco-Mosqueda, Sonia Almeria and Jenny Maloney
    Citation: BMC Genomics 2024 25:246
  37. We investigated whole blood and hepatic mRNA expressions of immune genes and rumen microbiome of crossbred beef steers with divergent residual feed intake phenotype to identify relevant biological processes un...

    Authors: Godstime Taiwo, Olanrewaju B. Morenikeji, Modoluwamu Idowu, Taylor Sidney, Ajiboye Adekunle, Andres Pech Cervantes, Sunday Peters and Ibukun M. Ogunade
    Citation: BMC Genomics 2024 25:245
  38. Vitamin A and retinoic acid (RA, a metabolite of vitamin A), are inextricably involved to the development of skeletal muscle in animals. However, the mechanisms regulating skeletal muscle development by vitami...

    Authors: Pengkang Song, Jiamin Zhao, Weipeng Zhang, Xuying Li, Bingzhen Ji and Junxing Zhao
    Citation: BMC Genomics 2024 25:244
  39. Mosaic loss of chromosome Y (LOY) in leukocytes is the most prevalent somatic aneuploidy in aging humans. Men with LOY have increased risks of all-cause mortality and the major causes of death, including many ...

    Authors: Jonas Mattisson, Jonatan Halvardson, Hanna Davies, Bożena Bruhn-Olszewska, Paweł Olszewski, Marcus Danielsson, Josefin Bjurling, Amanda Lindberg, Ammar Zaghlool, Edyta Rychlicka-Buniowska, Jan P. Dumanski and Lars A. Forsberg
    Citation: BMC Genomics 2024 25:243
  40. Authors: Daniel Gaspar, Catarina Ginja, Nuno Carolino, Célia Leão, Helena Monteiro, Lino Tábuas, Sandra Branco, Ludovina Padre, Pedro Caetano, Ricardo Romão, Claudino Matos, António Marcos Ramos, Elisa Bettencourt and Ana Usié
    Citation: BMC Genomics 2024 25:241

    The original article was published in BMC Genomics 2024 25:100

  41. The caffeoyl-CoA-O methyltransferase (CCoAOMT) family plays a crucial role in the oxidative methylation of phenolic substances and is involved in various plant processes, including growth, development, and stress...

    Authors: Yiqing Wang, Tao Wang, Siyu Qi, Jiamin Zhao, Jiumei Kong, Zhihui Xue, Weijiang Sun and Wen Zeng
    Citation: BMC Genomics 2024 25:238
  42. The pathogenesis of vitiligo remains unclear. The genes encoding vitiligo-related RNA-binding proteins (RBPs) and their underlying pathogenic mechanism have not been determined.

    Authors: Jingzhan Zhang, Fang Xiang, Yuan Ding, Wen Hu, Hongjuan Wang, Xiangyue Zhang, Zixian Lei, Tingting Li, Peng Wang and Xiaojing Kang
    Citation: BMC Genomics 2024 25:236
  43. Orchardgrass (Dactylis glomerata L.), a perennial forage, has the advantages of rich leaves, high yield, and good quality and is one of the most significant forage for grassland animal husbandry and ecological ma...

    Authors: Guangyan Feng, Yongjuan Jiao, Huizhen Ma, Haoyang Bian, Gang Nie, Linkai Huang, Zheni Xie, Qifan Ran, Wenwen Fan, Wei He and Xinquan Zhang
    Citation: BMC Genomics 2024 25:235

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