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  1. The reliability of culture-independent pathogen detection in foods using metagenomics is contingent on the quality and composition of the reference database. The inclusion of microbial sequences from a diverse...

    Authors: Jillian Rumore, Matthew Walker, Franco Pagotto, Jessica D. Forbes, Christy-Lynn Peterson, Andrea D. Tyler, Morag Graham, Gary Van Domselaar, Celine Nadon, Aleisha Reimer and Natalie Knox
    Citation: BMC Genomics 2023 24:361
    Content type: Research Published on:

  3. WRKY transcription factors are a prominent gene family in plants, playing a crucial role in various biological processes including development, metabolism, defense, differentiation, and stress response. Although ...

    Authors: Quangang Liu, Shipeng Wang, Jiaxing Wen, Jianhua Chen, Yongqiang Sun and Shengjun Dong
    Citation: BMC Genomics 2023 24:358
    Content type: Research Published on:

  4. Hepatocellular carcinoma (HCC), which has a complex pathogenesis and poor prognosis, is one of the most common malignancies worldwide. Hepatitis virus B infection is the most common cause of HCC in Asian patie...

    Authors: Yanjie Wang, Sijia Huang, Yingtian Zhang, Yaping Cheng, Liya Dai, Wenwen Gao, Zhengyang Feng, Jialong Tao and Yusong Zhang
    Citation: BMC Genomics 2023 24:357
    Content type: Research Published on:

  5. The female reproductive tract is exposed directly to the male’s ejaculate, making it a hotspot for mating-induced responses. In Drosophila melanogaster, changes in the reproductive tract are essential to optimize...

    Authors: Sofie Y. N. Delbare, Asha M. Jain, Andrew G. Clark and Mariana F. Wolfner
    Citation: BMC Genomics 2023 24:356
    Content type: Research Published on:

  6. Domestic geese are seasonal breeders and have the lowest reproductive capacity among all poultry species. Magang geese is a topical short-day breeder, short photoperiod exposure stimulates its reproductive act...

    Authors: Jiaxin Liu, Yanglong Xu, Yushuai Wang, Jinning Zhang, Yuting Fu, Sui Liufu, Danli Jiang, Jianqiu Pan, Hongjia Ouyang, Yunmao Huang, Yunbo Tian and Xu Shen
    Citation: BMC Genomics 2023 24:355
    Content type: Research Published on:

  7. BBX proteins play important roles in all of the major light-regulated developmental processes. However, no systematic analysis of BBX gene family regarding the regulation of photoperiodic microtuber formation has...

    Authors: Yingying Chang, Haoyuan Sun, Shiyu Liu, Yulong He, Shanshan Zhao, Jiage Wang, Tianle Wang, Jiangli Zhang, Jin Gao, Qingxiang Yang, Mingjun Li and Xiting Zhao
    Citation: BMC Genomics 2023 24:354
    Content type: Research Published on:

  8. As one of the components of visual photopigments in photoreceptor cells, opsin exhibits different spectral peaks and plays crucial roles in visual function. Besides, it is discovered to evolve other functions ...

    Authors: Jia-Bao Lu, Ze-Dong Li, Zhuang-Xin Ye, Hai-Jian Huang, Jian-Ping Chen, Jun-Min Li and Chuan-Xi Zhang
    Citation: BMC Genomics 2023 24:353
    Content type: Research Published on:

  9. Clonostachys rosea is an established biocontrol agent. Selected strains have either mycoparasitic activity against known pathogens (e.g. Fusarium species) and/or plant growth promoting activity on various crops. ...

    Authors: Adilah Bahadoor, Kelly A. Robinson, Michele C. Loewen and Zerihun A. Demissie
    Citation: BMC Genomics 2023 24:352
    Content type: Research Published on:

  10. The development of the brain requires precise coordination of molecular processes across many cell-types. Underpinning these events are gene expression programs which require intricate regulation by non-coding...

    Authors: Miguel Ramirez, Remi Robert, Joanna Yeung, Joshua Wu, Ayasha Abdalla-Wyse and Daniel Goldowitz
    Citation: BMC Genomics 2023 24:351
    Content type: Research Published on:

  11. Poa annua (annual bluegrass) is an allotetraploid turfgrass, an agronomically significant weed, and one of the most widely dispersed plant species on earth. Here, we report the chromosome-scale genome assemblies ...

    Authors: Christopher W. Benson, Matthew R. Sheltra, Peter J. Maughan, Eric N. Jellen, Matthew D. Robbins, B. Shaun Bushman, Eric L. Patterson, Nathan D. Hall and David R. Huff
    Citation: BMC Genomics 2023 24:350
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2023 24:404

  12. T cell receptor repertoires can be profiled using next generation sequencing (NGS) to measure and monitor adaptive dynamical changes in response to disease and other perturbations. Genomic DNA-based bulk seque...

    Authors: Burcu Gurun, Wesley Horton, Dhaarini Murugan, Biqing Zhu, Patrick Leyshock, Sushil Kumar, Katelyn T. Byrne, Robert H. Vonderheide, Adam A. Margolin, Motomi Mori, Paul T. Spellman, Lisa M. Coussens and Terence P. Speed
    Citation: BMC Genomics 2023 24:349
    Content type: Research article Published on:

  13. Moso bamboo (Phyllostachys edulis) is a typical East Asian bamboo that does not flower for > 60 years and propagates without seed reproduction. Thus, Moso bamboo can be propagated vegetatively, possibly resulting...

    Authors: Norihide Nishiyama, Akihisa Shinozawa, Takashi Matsumoto and Takeshi Izawa
    Citation: BMC Genomics 2023 24:348
    Content type: Research Published on:

  14. In large-scale high-throughput sequencing projects and biobank construction, sample tagging is essential to prevent sample mix-ups. Despite the availability of fingerprint panels for DNA data, little research ...

    Authors: Zhe Xu, Si Cheng, Xin Qiu, Xiaoqi Wang, Qiuwen Hu, Yanfeng Shi, Yang Liu, Jinxi Lin, Jichao Tian, Yongfei Peng, Yong Jiang, Yadong Yang, Jianwei Ye, Yilong Wang, Xia Meng, Zixiao Li…
    Citation: BMC Genomics 2023 24:347
    Content type: Research Published on:

  15. Pinus is the largest genus of Pinaceae and the most primitive group of modern genera. Pines have become the focus of many molecular evolution studies because of their wide use and ecological significance. However...

    Authors: Qijing Xia, Hongbin Zhang, Dong Lv, Yousry A. El-Kassaby and Wei Li
    Citation: BMC Genomics 2023 24:346
    Content type: Research Published on:

  16. Poplar is one of the main urban and rural greening and shade tree species in the northern hemisphere, but its growth and development is always restricted by salt stress. R2R3-MYB transcription factor family is...

    Authors: Jia Hu, Shengqiang Zou, Juanjuan Huang, Xuhui Huan, Xia Jin, Lieding Zhou, Kai Zhao, Youzhi Han and Shengji Wang
    Citation: BMC Genomics 2023 24:345
    Content type: Research Published on:

  17. Tea geometrid Ectropis grisescens (Geometridae: Lepidoptera), is one of the most destructive defoliators in tea plantations in China. The MAPK cascade is known to be an evolutionarily conserved signaling module, ...

    Authors: Xiaozhu Wu, Chenghua Zhou, Xiaofang Li, Jingyi Lin, Luis Carlos Ramos Aguila, Feng Wen and Liande Wang
    Citation: BMC Genomics 2023 24:344
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2023 24:394

  18. The tobacco thrips (Frankliniella fusca Hinds; family Thripidae; order Thysanoptera) is an important pest that can transmit viruses such as the tomato spotted wilt orthotospovirus to numerous economically importa...

    Authors: Michael A. Catto, Paul E. Labadie, Alana L. Jacobson, George G. Kennedy, Rajagopalbabu Srinivasan and Brendan G. Hunt
    Citation: BMC Genomics 2023 24:343
    Content type: Research Published on:

  19. Tibetan chickens (Gallus gallus; TBCs), an indigenous breed distributed in the Qinghai-Tibet Plateau, are well adapted to the hypoxic environment. Currently, the molecular genetic basis of hypoxia adaptation in T...

    Authors: Qiguo Tang, Runjie Yu, Yubei Wang, Fuyin Xie, Hao Zhang, Changxin Wu and Meiying Fang
    Citation: BMC Genomics 2023 24:342
    Content type: Research Published on:

  20. Glutathione S-transferases (GSTs) are large and multifunctional proteases that play an important role in detoxification, protection against biotic and abiotic stresses, and secondary metabolite transportation ...

    Authors: Zejun Mo, Ying Huang, Tianxiunan Pu, Lili Duan, Kai Pi, Jiajun Luo, Benshan Long, Anbin Lu and Renxiang Liu
    Citation: BMC Genomics 2023 24:341
    Content type: Research Published on:

  21. Oriental river prawn (Macrobrachium nipponense) is one of the most dominant species in shrimp farming in China, which is a rich source of protein and contributes to a significant impact on the quality of human li...

    Authors: Cheng-Yan Mou, Qiang Li, Zhi-Peng Huang, Hong-Yu Ke, Han Zhao, Zhong-Meng Zhao, Yuan-Liang Duan, Hua-Dong Li, Yu Xiao, Zhou-Ming Qian, Jun Du, Jian Zhou and Lu Zhang
    Citation: BMC Genomics 2023 24:340
    Content type: Research Published on:

  22. The plant bug, Pachypeltis micranthus Mu et Liu (Hemiptera: Miridae), is an effective potential biological control agent for Mikania micrantha H.B.K. (Asteraceae; one of the most notorious invasive weeds worldwid...

    Authors: Xiafei Wang, Ning Zhao, Liqiong Cai, Naiyong Liu, Jiaying Zhu and Bin Yang
    Citation: BMC Genomics 2023 24:339
    Content type: Research Published on:

  23. The search for quantitative trait loci (QTL) affecting traits of interest in mammals is frequently limited to autosomes, with the X chromosome excluded because of its hemizygosity in males. This study aimed to...

    Authors: Marie-Pierre Sanchez, Clémentine Escouflaire, Aurélia Baur, Fiona Bottin, Chris Hozé, Mekki Boussaha, Sébastien Fritz, Aurélien Capitan and Didier Boichard
    Citation: BMC Genomics 2023 24:338
    Content type: Research Published on:

  24. Wall associated kinase (WAK) and WAK-like (WAKL) are typical pattern recognition receptors act as the first sentry of plant defense. But little of WAK/WAKL family is known in Rosaceae.

    Authors: Zicheng Wang, Yuan Ma, Meng Chen, Lingling Da, Zhen Su, Zhao Zhang and Xintong Liu
    Citation: BMC Genomics 2023 24:337
    Content type: Research Published on:

  25. Labeo rohita is the most preferred freshwater carp species in India. The concern of increasing salinity concentration in freshwater bodies due to climate change may greatly impact the aquatic environment. Gills a...

    Authors: Vemula Harshini, Nitin Shukla, Ishan Raval, Sujit Kumar, Vivek Shrivastava, Aparna Chaudhari, Amrutlal K. Patel and Chaitanya G. Joshi
    Citation: BMC Genomics 2023 24:336
    Content type: Research Published on:

  26. Genomic prediction of breeding values (GP) has been adopted in evolutionary genomic studies to uncover microevolutionary processes of wild populations or improve captive breeding strategies. While recent evolu...

    Authors: Seyed Milad Vahedi, Siavash Salek Ardetani, Luiz F. Brito, Karim Karimi, Kian Pahlavan Afshari and Mohammad Hossein Banabazi
    Citation: BMC Genomics 2023 24:335
    Content type: Research Published on:

  27. Panax ginseng is a perennial herb and one of the most widely used traditional medicines in China. During its long growth period, it is affected by various environmental factors. Past studies have shown that grow...

    Authors: Ping Wang, Ying Xiao, Min Yan, Yan Yan, Xiujuan Lei, Peng Di and Yingping Wang
    Citation: BMC Genomics 2023 24:334
    Content type: Research Published on:

  28. Subacute ruminal acidosis (SARA) is a metabolic disorder often observed in high-yielding dairy cows, that are fed diets high in concentrates. We hypothesized that circulating miRNAs in blood of cows could serv...

    Authors: O. E. Ojo, L. Hajek, S. Johanns, C. Pacífico, A. Sener-Aydemir, S. Ricci, R. Rivera-Chacon, E. Castillo-Lopez, N. Reisinger, Q. Zebeli and S. Kreuzer-Redmer
    Citation: BMC Genomics 2023 24:333
    Content type: Research article Published on:

  29. The rich genetic diversity in Citrullus lanatus and the other six species in the Citrullus genus provides important sources in watermelon breeding. Here, we present the Citrullus genus pan-genome based on the 400...

    Authors: Yang Sun, Dou-Rong Kou, Yan Li, Jiang-Ping Ni, Jing Wang, Yong-Mei Zhang, Qing-Nan Wang, Bin Jiang, Xu Wang, Yue-Xin Sun, Xin-Tong Xu, Xiao-Juan Tan, Yong-Jun Zhang and Xiang-dong Kong
    Citation: BMC Genomics 2023 24:332
    Content type: Research Published on:

  30. Physiological effects of ocean acidification associated with elevated CO2 concentrations in seawater is the subject of numerous studies in teleost fish. While the short time within-generation impact of ocean a...

    Authors: Pauline Auffret, Arianna Servili, Anne-Alicia Gonzalez, Marie-Lou Fleury, Felix Christopher Mark and David Mazurais
    Citation: BMC Genomics 2023 24:331
    Content type: Research Published on:

  31. Balanophoraceae plastomes are known for their highly condensed and re-arranged nature alongside the most extreme nucleotide compositional bias known to date, culminating in two independent reconfigurations of ...

    Authors: Woorin Kim, Thea Lautenschläger, Jay F. Bolin, Mathew Rees, Albertina Nzuzi, Renchao Zhou, Stefan Wanke and Matthias Jost
    Citation: BMC Genomics 2023 24:330
    Content type: Research Published on:

  32. Branching is a plastic character that affects plant architecture and spatial structure. The trait is controlled by a variety of plant hormones through coordination with environmental signals. Plant AT-rich seq...

    Authors: Jiuyang Li, Yongliang Zhao, Yaohui Zhang, Feng Ye, Zhengcun Hou, Yuhang Zhang, Longjie Hao, Guofang Li, Jianzhu Shao and Ming Tan
    Citation: BMC Genomics 2023 24:329
    Content type: Research Published on:

  33. Septoria tritici blotch (STB) remains a significant obstacle to durum wheat cultivation on a global scale. This disease remains a challenge for farmers, researchers, and breeders, who are collectively dedicate...

    Authors: Maroua Ouaja, Bochra A. Bahri, Sahbi Ferjaoui, Maher Medini, Udupa M. Sripada and Sonia Hamza
    Citation: BMC Genomics 2023 24:328
    Content type: Research Published on:

  34. Retinal neovascularization (RNV) is a leading cause of blindness worldwide. Long non-coding RNA (lncRNA) and competing endogenous RNA (ceRNA) regulatory networks play vital roles in angiogenesis. The RNA-bindi...

    Authors: Ning Yang, Ningzhi Zhang, Zhiyi Wang, Wenye Cao, Xuejun He, Wenxi Zhang and Yiqiao Xing
    Citation: BMC Genomics 2023 24:327
    Content type: Research Published on:

  35. White clover (Trifolium repens L.), an excellent perennial legume forage, is an allotetraploid native to southeastern Europe and southern Asia. It has high nutritional, ecological, genetic breeding, and medicinal...

    Authors: Hongjie Wang, Yongqiang Wu, Yong He, Guoyu Li, Lichao Ma, Shuo Li, Jianwei Huang and Guofeng Yang
    Citation: BMC Genomics 2023 24:326
    Content type: Research Published on:

  36. Premenopausal women diagnosed with breast cancer often face aggressive chemotherapy resulting in infertility. Tamoxifen (TAM) is a selective estrogen receptor modulator that was previously suggested as a prote...

    Authors: Anna Nynca, Sylwia Swigonska, Monika Ruszkowska, Agnieszka Sadowska, Karina Orlowska, Tomasz Molcan, Kamil Myszczynski, Iwona Otrocka-Domagala, Katarzyna Paździor-Czapula, Beata Kurowicka, Brian Kelli Petroff and Renata Elzbieta Ciereszko
    Citation: BMC Genomics 2023 24:325
    Content type: Research article Published on:

  37. Genome-wide association studies (GWASs) have identified many single-nucleotide polymorphisms (SNPs) associated with complex phenotypes in the European (EUR) population; however, the extent to which EUR-associa...

    Authors: Jiahao Qiao, Yuxuan Wu, Shuo Zhang, Yue Xu, Jinhui Zhang, Ping Zeng and Ting Wang
    Citation: BMC Genomics 2023 24:324
    Content type: Research Published on:

  38. Gastric cancer (GC) carries significant morbidity and mortality globally. An increasing number of studies have confirmed that circular RNA (circRNA) is tightly associated with the carcinogenesis and developmen...

    Authors: Jianing Yan, Guoliang Ye, Yanping Jin, Min Miao, Qier Li and Hanxuan Zhou
    Citation: BMC Genomics 2023 24:323
    Content type: Research Published on:

  39. GBA1 variants are the strongest genetic risk factor for Parkinson’s disease (PD). However, the pathogenicity of GBA1 variants concerning PD is still not fully understood. Additionally, the frequency of GBA1 varia...

    Authors: Carolin Gabbert, Susen Schaake, Theresa Lüth, Christoph Much, Christine Klein, Jan O. Aasly, Matthew J. Farrer and Joanne Trinh
    Citation: BMC Genomics 2023 24:322
    Content type: Research Published on:

  40. The Ustilaginales comprise hundreds of plant-parasitic fungi with a characteristic life cycle that directly links sexual reproduction and parasitism: One of the two mating-type loci codes for a transcription f...

    Authors: Lena Steins, Marco Alexandre Guerreiro, Marine Duhamel, Fei Liu, Qi-Ming Wang, Teun Boekhout and Dominik Begerow
    Citation: BMC Genomics 2023 24:321
    Content type: Research Published on:

  41. NIN-like protein (NLP) transcription factors (TFs) compose a plant-specific gene family whose members play vital roles in plant physiological processes, especially in the regulation of plant growth and the res...

    Authors: Jinqiu Yu, Yuying Yuan, Linling Dong and Guowen Cui
    Citation: BMC Genomics 2023 24:320
    Content type: Research Published on:

  42. There is still more to learn about the pathobiology of COVID-19. A multi-omic approach offers a holistic view to better understand the mechanisms of COVID-19. We used state-of-the-art statistical learning meth...

    Authors: Danika Lipman, Sandra E. Safo and Thierry Chekouo
    Citation: BMC Genomics 2023 24:319
    Content type: Research Published on:

  44. Yungui Plateau in Southwest China is characterized by multi-language and multi-ethnic communities and is one of the regions with the wealthiest ethnolinguistic, cultural and genetic diversity in East Asia. The...

    Authors: Jiawen Wang, Jun Wu, Qiuxia Sun, Qian Wu, Youjing Li, Shuhan Duan, Lin Yang, Wenxin Wu, Zheng Wang, Yan Liu, Renkuan Tang, Junbao Yang, Chuanchao Wang, Chao Liu, Jianwei Xu, Mengge Wang…
    Citation: BMC Genomics 2023 24:317
    Content type: Research Published on:

  45. In recent years, accumulating evidences have revealed that influenza A virus (IAV) infections induce significant differential expression of host long noncoding RNAs (lncRNAs), some of which play important role...

    Authors: Shengqiang Jiang, Jing Hu, Yang Bai, Ruiwei Hao, Long Liu and Hongying Chen
    Citation: BMC Genomics 2023 24:316
    Content type: Research Published on:

  46. Conflict between genes inherited from the mother (matrigenes) and the father (patrigenes) is predicted to arise during social interactions among offspring if these genes are not evenly distributed among offspr...

    Authors: Sean T. Bresnahan, Ellen Lee, Lindsay Clark, Rong Ma, Juliana Rangel, Christina M. Grozinger and Hongmei Li-Byarlay
    Citation: BMC Genomics 2023 24:315
    Content type: Research Published on:

  47. Genome-wide association studies have detected a large number of single-nucleotide polymorphisms (SNPs) associated with complex traits in diverse ancestral groups. However, the trans-ethnic similarity and diver...

    Authors: Jinhui Zhang, Shuo Zhang, Jiahao Qiao, Ting Wang and Ping Zeng
    Citation: BMC Genomics 2023 24:314
    Content type: Research Published on:

  48. Rewriting the genomes of living organisms has been a long-standing aim in the biological sciences. The revelation of the CRISPR/Cas9 technology has revolutionized the entire biological field. Since its emergen...

    Authors: Shiwei Zhou, Laura Johanna Lenk, Yawei Gao, Yuhui Wang, Xiaoe Zhao, Menghao Pan, Shuhong Huang, Kexin Sun, Peter Kalds, Qi Luo, Simon Lillico, Tad Sonstegard, Ute I. Scholl, Baohua Ma, Bjoern Petersen, Yulin Chen…
    Citation: BMC Genomics 2023 24:313
    Content type: Research Published on:

  49. The emergence and rapid spread of new severe acute respiratory syndrome coronavirus 2 (SARS-COV-2) variants have challenged the control of the COVID-19 pandemic globally. Burundi was not spared by that pandemi...

    Authors: Cassien Nduwimana, Néhémie Nzoyikorera, Armstrong Ndihokubwayo, Théogène Ihorimbere, Célestin Nibogora, Adolphe Ndoreraho, Oscar Hajayandi, Jean Claude Bizimana, Idrissa Diawara, Dionis Niyonizigiye and Joseph Nyandwi
    Citation: BMC Genomics 2023 24:312
    Content type: Research Published on:

  50. Rapid adaptation to new environments can facilitate species invasions and range expansions. Understanding the mechanisms of adaptation used by invasive disease vectors in new regions has key implications for m...

    Authors: Shaghayegh Soudi, Marc Crepeau, Travis C. Collier, Yoosook Lee, Anthony J. Cornel and Gregory C. Lanzaro
    Citation: BMC Genomics 2023 24:311
    Content type: Research Published on:

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BMC Genomics

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