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  1. Transforming growth factor β (TGF-β) superfamily genes can regulate various processes, especially in embryogenesis, adult development, and homeostasis. To understand the evolution and divergence patterns of th...

    Authors: Qian Zhang, Jianming Chen, Wei Wang, Jingyu Lin and Jiabao Guo
    Citation: BMC Genomics 2024 25:24
  2. Jianli pig, a renowned indigenous breed in China, has the characteristics of a two-end black (TEB) coat color, excellent meat quality, strong adaptability and increased prolificacy. However, there is limited i...

    Authors: Zhong Xu, Junjing Wu, Yu Zhang, Mu Qiao, Jiawei Zhou, Yue Feng, Zipeng Li, Hua Sun, Ruiyi Lin, Zhongxu Song, Haizhong Zhao, Lianghua Li, Nanqi Chen, Yujie Li, Favour Oluwapelumi Oyelami, Xianwen Peng…
    Citation: BMC Genomics 2024 25:23
  3. Gelsemium elegans is a traditional Chinese medicinal plant and temperature is one of the key factors affecting its growth. RAV (related to ABI3/VP1) transcription factor plays multiple roles in higher plants, inc...

    Authors: Tianzhen Cui, Shoujian Zang, Xinlu Sun, Jing Zhang, Yachun Su, Dongjiao Wang, Guran Wu, Ruiqi Chen, Youxiong Que, Qing Lin and Chuihuai You
    Citation: BMC Genomics 2024 25:22
  4. The order Lepidoptera has an abundance of species, including both agriculturally beneficial and detrimental insects. Molecular data has been used to investigate the phylogenetic relationships of major subdivis...

    Authors: Abdelhameed Elameen, Simo N. Maduna, Melissa H. Mageroy, André van Eerde, Geir Knudsen, Snorre B. Hagen and Hans Geir Eiken
    Citation: BMC Genomics 2024 25:21
  5. Glycoside hydrolase family 1 (GH1) β-glucosidases (BGLUs), are encoded by a large number of genes, which participate in the development and stress response of plants, particularly under biotic and abiotic stre...

    Authors: Haiming Kong, Jiaxing Song, Shihai Ma, Jing Yang, Zitong Shao, Qian Li, Zhongxing Li, Zhiguo Xie, Peizhi Yang and Yuman Cao
    Citation: BMC Genomics 2024 25:20
  6. Eukaryotic messenger RNAs (mRNAs) are often modified with methyl groups at the N6 position of adenosine (m6A), and these changes are interpreted by YTH domain-containing proteins to regulate the metabolism of ...

    Authors: Shugao Fan, Xiao Xu, Jianmin Chen, Yanling Yin and Ying Zhao
    Citation: BMC Genomics 2024 25:18
  7. Specific pathogen-free ducks are a valuable laboratory resource for waterfowl disease research and poultry vaccine development. High throughput sequencing allows the systematic identification of structural var...

    Authors: Lanlan Li, Jinqiang Quan, Hongyi Liu, Haibo Yu, Hongyan Chen, Changyou Xia, Shengguo Zhao and Caixia Gao
    Citation: BMC Genomics 2024 25:17
  8. The Rhus gall aphid, Schlechtendalia chinensis, feeds on its primary host plant Rhus chinensis to induce galls, which have economic importance in medicines and the food industry. Rhus gall aphids have a unique li...

    Authors: Aftab Ahmad, Carol von Dohlen and Zhumei Ren
    Citation: BMC Genomics 2024 25:16
  9. The sacred datura plant (Solanales: Solanaceae: Datura wrightii) has been used to study plant–herbivore interactions for decades. The wealth of information that has resulted leads it to have potential as a model ...

    Authors: Jay K. Goldberg, Aaron Olcerst, Michael McKibben, J. Daniel Hare, Michael S. Barker and Judith L. Bronstein
    Citation: BMC Genomics 2024 25:15
  10. Mapping expression quantitative trait loci (eQTLs) in skeletal muscle tissue in pigs is crucial for understanding the relationship between genetic variation and phenotypic expression of carcass traits in meat ...

    Authors: Felipe André Oliveira Freitas, Luiz F. Brito, Simara Larissa Fanalli, Janaína Lustosa Gonçales, Bruna Pereira Martins da Silva, Mariah Castro Durval, Fernanda Nery Ciconello, Camila Sabino de Oliveira, Lucas Echevarria Nascimento, Izally Carvalho Gervásio, Julia Dezen Gomes, Gabriel Costa Monteiro Moreira, Bárbara Silva-Vignato, Luiz Lehmann Coutinho, Vivian Vezzoni de Almeida and Aline Silva Mello Cesar
    Citation: BMC Genomics 2024 25:14
  11. GRAS is a family of plant-specific transcription factors (TFs) that play a vital role in plant growth and development and response to adversity stress. However, systematic studies of the GRAS TF family in kiwi...

    Authors: Ling Zhu, Tuo Yin, Mengjie Zhang, Xiuyao Yang, Jiexin Wu, Hanbing Cai, Na Yang, Xulin Li, Ke Wen, Daming Chen, Hanyao Zhang and Xiaozhen Liu
    Citation: BMC Genomics 2024 25:12
  12. Genomic dissection of genetic effects on desirable traits and the subsequent use of genomic selection hold great promise for accelerating the rate of genetic improvement of forest tree species. In this study, ...

    Authors: Leiming Dong, Yunhui Xie, Yalin Zhang, Ruizhen Wang and Xiaomei Sun
    Citation: BMC Genomics 2024 25:11
  13. Plant U-box (PUB) E3 ubiquitin ligases have vital effects on various biological processes. Therefore, a comprehensive and systematic identification of the members of the U-box gene family in potato will help t...

    Authors: Zhen Liu, Lei Wang, Yuanming Li, Jinyong Zhu, Zhitao Li, Limin Chen, Hongyang Li, Tianbin Shi, Panfeng Yao, Zhenzhen Bi, Chao Sun, Jiangping Bai, Junlian Zhang and Yuhui Liu
    Citation: BMC Genomics 2024 25:10
  14. Planting tested forest reproductive material is crucial to ensure the increased resilience of intensively managed productive stands for timber and wood product markets under climate change scenarios. Single-st...

    Authors: Kedra M. Ousmael, Eduardo P. Cappa, Jon K. Hansen, Prasad Hendre and Ole K. Hansen
    Citation: BMC Genomics 2024 25:9
  15. Oxidative stress (OS) plays an essential role in chronic diseases such as colorectal cancer (CRC). In this study, we aimed to explore the relation between oxidative stress-related genes and CRC prognosis and t...

    Authors: Leilei Yang, Chengfeng Fang, Ruili Zhang and Shenkang Zhou
    Citation: BMC Genomics 2024 25:8
  16. Nitrogen use efficiency (NUE) is closely related to crop yield and nitrogen fertilizer application rate. Although NUE is susceptible to environments, quantitative trait nucleotides (QTNs) for NUE in wheat germ...

    Authors: Zaicheng Zhang, Chaojun Peng, Weigang Xu, Yan Li, Xueli Qi and Mingzhong Zhao
    Citation: BMC Genomics 2024 25:7
  17. Microsporidia are a large taxon of intracellular pathogens characterized by extraordinarily streamlined genomes with unusually high sequence divergence and many species-specific adaptations. These unique facto...

    Authors: Dennis Svedberg, Rahel R. Winiger, Alexandra Berg, Himanshu Sharma, Christian Tellgren-Roth, Bettina A. Debrunner-Vossbrinck, Charles R. Vossbrinck and Jonas Barandun
    Citation: BMC Genomics 2024 25:6
  18. Human endogenous retroviruses (HERVs) are the germline embedded proviral fragments of ancient retroviral infections that make up roughly 8% of the human genome. Our understanding of HERVs in physiology primari...

    Authors: Nicholas Dopkins, Bhavya Singh, Stephanie Michael, Panpan Zhang, Jez L. Marston, Tongyi Fei, Manvendra Singh, Cedric Feschotte, Nicholas Collins, Matthew L. Bendall and Douglas F. Nixon
    Citation: BMC Genomics 2024 25:5
  19. TCP proteins are plant specific transcription factors that play important roles in plant growth and development. Despite the known significance of these transcription factors in general plant development, thei...

    Authors: Chaoqun Chen, Yao Zhang, Yuanfei Chen, Hongxu Chen and Ronggao Gong
    Citation: BMC Genomics 2024 25:3
  20. There has been a significant surge in the global prevalence of diabetes mellitus (DM), which increases the susceptibility of individuals to ovarian cancer (OC). However, the relationship between DM and OC rema...

    Authors: Zhihao Zhao, Qilin Wang, Fang Zhao, Junnan Ma, Xue Sui, Hyok Chol Choe, Peng Chen, Xue Gao and Lin Zhang
    Citation: BMC Genomics 2024 25:1
  21. Increasing evidence has shown that the expression of circular RNAs (circRNAs) can affect the drug sensitivity of cells and significantly influence drug efficacy. Therefore, research into the relationships betw...

    Authors: Shanghui Lu, Yong Liang, Le Li, Shuilin Liao, Yongfu Zou, Chengjun Yang and Dong Ouyang
    Citation: BMC Genomics 2023 24:796
  22. GDSL esterase/lipases (GELPs) play important roles in plant growth, development, and response to biotic and abiotic stresses. Presently, an extensive and in-depth analysis of GELP family genes in cotton is still ...

    Authors: Lisheng Duan, Fei Wang, Haitao Shen, Shuangquan Xie, Xifeng Chen, Quanliang Xie, Rong Li, Aiping Cao and Hongbin Li
    Citation: BMC Genomics 2023 24:795
  23. Sepsis is a life-threatening syndrome resulting from immune system dysfunction that is caused by infection. It is of great importance to analyze the immune characteristics of sepsis, identify the key immune sy...

    Authors: Haiyan Xue, Ziyan Xiao, Xiujuan Zhao, Shu Li, Zhenzhou Wang, Jie Zhao and Fengxue Zhu
    Citation: BMC Genomics 2023 24:794
  24. Heat shock proteins (HSPs) function as molecular chaperones with critical roles in chicken embryogenesis, immune response to infectious diseases, and response to various environmental...

    Authors: Anh Duc Truong, Ha Thi Thanh Tran, Nhu Thi Chu, Huyen Thi Nguyen, Lanh Phan, Hoai Thi Phan, Thi Hao Vu, Ki-Duk Song, Hyun S. Lillehoj, Yeong Ho Hong and Hoang Vu Dang
    Citation: BMC Genomics 2023 24:793
  25. Changshun green-shell laying hens are unique to the Guizhou Province, China, and have high egg quality but relatively low yield. Egg production traits are regulated by the hypothalamus-pituitary-ovary axis. Ho...

    Authors: Wenbin Xu, Ren Mu, Tuya Gegen, Tiantian Ran, Qi Wu, Di Wen, Fen Wang and Zhi Chen
    Citation: BMC Genomics 2023 24:792
  26. Escherichia coli O157:H7 is a foodborne pathogen that has been linked to global disease outbreaks. These diseases include hemorrhagic colitis and hemolytic uremic syndrome. It is vital to know the features that ...

    Authors: Natalie Naidoo and Oliver T. Zishiri
    Citation: BMC Genomics 2023 24:791
  27. Transcriptome studies disentangle functional mechanisms of gene expression regulation and may elucidate the underlying biology of disease processes. However, the types of tissues currently collected typically ...

    Authors: Molly Martorella, Silva Kasela, Renee Garcia-Flores, Alper Gokden, Stephane E. Castel and Tuuli Lappalainen
    Citation: BMC Genomics 2023 24:790
  28. Social interactions affect physiological and pathological processes, yet their direct impact in peripheral tissues remains elusive. Recently we showed that disruption of pair bonds in monogamous Peromyscus califo...

    Authors: A. Naderi, K. Liles, T. Burns, B. Chavez, K-T. Huynh-Dam and H. Kiaris
    Citation: BMC Genomics 2023 24:789
  29. Pulmonary arterial hypertension (PAH) is a devastating chronic cardiopulmonary disease without an effective therapeutic approach. The underlying molecular mechanism of PAH remains largely unexplored at single-...

    Authors: Yuhan Qin, Gaoliang Yan, Yong Qiao, Dong Wang and Chengchun Tang
    Citation: BMC Genomics 2023 24:788
  30. Cymbidium sinense is an orchid that is typically used as a potted plant, given its high-grade ornamental characteristics, and is most frequently distributed in China and SE Asia. The inability to strictly regulat...

    Authors: Youfa Lu, Tengji Li, Xiaolan Zhao, Mingjun Wang, Jiexian Huang, Ziqin Huang, Jaime A. Teixeira da Silva, Jun Duan, Can Si and Jianxia Zhang
    Citation: BMC Genomics 2023 24:786
  31. Currently, the influence of microbiota on the occurrence, progression, and treatment of cancer is a topic of considerable research interest. Therefore, based on the theory of the gut-brain axis proved by previ...

    Authors: Chuan Zeng, Chaolong Zhang, Chunming He and Haimin Song
    Citation: BMC Genomics 2023 24:784
  32. Genomic rearrangements in cancer cells can create fusion genes that encode chimeric proteins or alter the expression of coding and non-coding RNAs. In some cancer types, fusions involving specific kinases are ...

    Authors: Völundur Hafstað, Jari Häkkinen, Malin Larsson, Johan Staaf, Johan Vallon-Christersson and Helena Persson
    Citation: BMC Genomics 2023 24:783
  33. Odorant-binding proteins (OBPs) are essential in insect’s daily behaviors mediated by olfactory perception. Megachile saussurei Radoszkowski (Hymenoptera, Megachilidae) is a principal insect pollinating alfalfa (

    Authors: Wei-Zhen Li, Wen-Juan Kang, Jing-Jiang Zhou, Su-Qin Shang and Shang-Li Shi
    Citation: BMC Genomics 2023 24:781
  34. The bHLH transcription factor family is named after the basic helix-loop-helix (bHLH) domain that is a characteristic element of their members. Understanding the function and characteristics of this family is ...

    Authors: Corinna Thoben and Boas Pucker
    Citation: BMC Genomics 2023 24:780
  35. RNA-Seq analysis of Formalin-Fixed and Paraffin-Embedded (FFPE) samples has emerged as a highly effective approach and is increasingly being used in clinical research and drug development. However, the process...

    Authors: Liang Zong, Yabing Zhu, Yuan Jiang, Ying Xia, Qun Liu and Sanjie Jiang
    Citation: BMC Genomics 2023 24:777
  36. It is widely acknowledged that hypoxia and m6A/m5C/m1A RNA modifications promote the occurrence and development of tumors by regulating the tumor microenvironment. This study aimed to establish a novel liver c...

    Authors: Min ren, Bei Fan, Guangcai Cao, Rongrong Zong, Liaoliao Feng and Huiru Sun
    Citation: BMC Genomics 2023 24:776
  37. Streptococcus iniae is an important fish pathogen that cause significant economic losses to the global aquaculture industry every year. Although there have some reports on the genotype of S.iniae and its relation...

    Authors: Xiangying Xiong, Ruifang Chen and Junxiang Lai
    Citation: BMC Genomics 2023 24:775
  38. Atherosclerosis (AS) is a critical pathological event during the progression of cardiovascular diseases. It exhibits fibrofatty lesions on the arterial wall and lacks effective treatment. N6-methyladenosine (m6A)...

    Authors: Xinbin Zheng, Bo Zhou, Yuzhen Li, Hengren Zhong, Zhengxin Huang and Minhua Gu
    Citation: BMC Genomics 2023 24:774
  39. Transcriptomic studies often require collection of fresh tissues post euthanasia. The chosen euthanasia method might have the potential to induce variations in gene expressions that are unlinked with the exper...

    Authors: B. Chakkingal Bhaskaran, R. Meyermans, W. Gorssen, G. E. Maes, J. Buyse, S. Janssens and N. Buys
    Citation: BMC Genomics 2023 24:769
  40. Plasmodium falciparum is responsible for malaria-related morbidity and mortality. PfEMP1 (P. falciparum erythrocyte membrane protein 1) mediates infected erythrocytes adhesion to various surface vascular receptor...

    Authors: Jasmita Gill, Himmat Singh and Amit Sharma
    Citation: BMC Genomics 2023 24:773
  41. Date palm (Phoenix dactylifera L.) is the most widespread crop in arid and semi-arid regions and has great traditional and socioeconomic importance, with its fruit well-known for its high nutritional and health v...

    Authors: Hammadi Hamza, Sara Villa, Sara Torre, Alexis Marchesini, Mohamed Ali Benabderrahim, Mokhtar Rejili and Federico Sebastiani
    Citation: BMC Genomics 2023 24:772
  42. Proteins with the jumonji (JMJ)-C domain belong to the histone demethylase family and contribute to reverse histone methylation. Although JMJ-C family genes have an essential role in regulating plant growth an...

    Authors: Wuyun Jin, Wei Yan, Ming Ma, Agula Hasi and Gen Che
    Citation: BMC Genomics 2023 24:771
  43. Previous studies on the biomarkers of pathologic myopia choroidal neovascularization (pmCNV) development merely detected limited types of proteins and provide a meagre illustration of the underlying pathways. ...

    Authors: Huimin Yu, Zheng Zhong, Yin Zhao, Huan Luo, Jinfu Sun, Ruohong Wang, Xian Zhang and Xufang Sun
    Citation: BMC Genomics 2023 24:767

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