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  1. The mountain pine beetle, Dendroctonus ponderosae, is an irruptive bark beetle that causes extensive mortality to many pine species within the forests of western North America. Driven by climate change and wildfi...

    Authors: Janet X. Li, Kleinberg X. Fernandez, Carol Ritland, Sharon Jancsik, Daniel B. Engelhardt, Lauren Coombe, René L. Warren, Marco J. van Belkum, Allan L. Carroll, John C. Vederas, Joerg Bohlmann and Inanc Birol
    Citation: BMC Genomics 2023 24:390
    Content type: Research Published on:

  2. Accessory proteins have diverse roles in coronavirus pathobiology. One of them in SARS-CoV (the causative agent of the severe acute respiratory syndrome outbreak in 2002–2003) is encoded by the open reading fr...

    Authors: Anastassia Bykova, Andreu Saura, Galina V. Glazko, Abiel Roche-Lima, Vyacheslav Yurchenko and Igor B. Rogozin
    Citation: BMC Genomics 2023 24:387
    Content type: Research Published on:

  3. The development of abdominal fat and meat quality are closely related and can impact economic efficiency. In this study, we conducted transcriptome sequencing of the abdominal fat tissue of Gushi chickens at 6...

    Authors: Bin Zhai, Hongtai Li, Shuaihao Li, Jinxing Gu, Hongyuan Zhang, Yanhua Zhang, Hong Li, Yadong Tian, Guoxi Li and Yongcai Wang
    Citation: BMC Genomics 2023 24:386
    Content type: Research Published on:

  4. The chlorophyll content (CC) is a key factor affecting maize photosynthetic efficiency and the final yield. However, its genetic basis remains unclear. The development of statistical methods has enabled resear...

    Authors: Xuehang Xiong, Jianxin Li, Pingping Su, Haiyang Duan, Li Sun, Shuhao Xu, Yan Sun, Haidong Zhao, Xiaoyang Chen, Dong Ding, Xuehai Zhang and Jihua Tang
    Citation: BMC Genomics 2023 24:384
    Content type: Research Published on:

  5. Biological mechanisms affecting gametogenesis, embryo development and postnatal viability have the potential to alter Mendelian inheritance expectations resulting in observable transmission ratio distortion (T...

    Authors: Samir Id-Lahoucine, Joaquim Casellas, Aroa Suárez-Vega, Pablo A. S. Fonseca, Flavio S. Schenkel, Mehdi Sargolzaei and Angela Cánovas
    Citation: BMC Genomics 2023 24:383
    Content type: Research Published on:

  7. Systematic description of library quality and sequencing performance of single-cell RNA sequencing (scRNA-seq) data is imperative for subsequent downstream modules, including re-pooling libraries. While severa...

    Authors: Isar Nassiri, Benjamin Fairfax, Angela Lee, Yanxia Wu, David Buck and Paolo Piazza
    Citation: BMC Genomics 2023 24:381
    Content type: Software Published on:

  8. Microspore embryogenesis is an extraordinarily complicated process, comprehensively regulated by a composite network of physiological and molecular factors, among which hormone is one of the most crucial facto...

    Authors: Chenggang Wang, Peiyu Zhang, Yun He, Furong Huang, Xu Wang, Hong Li, Lingyun Yuan, Jinfeng Hou, Guohu Chen, Wenjie Wang, Jianqiang Wu and Xiaoyan Tang
    Citation: BMC Genomics 2023 24:380
    Content type: Research Published on:

  10. Dendrobium officinale Kimura et Migo (D. officinale) is a well-known traditional Chinese medicine with high content polysaccharides in stems. The SWEET (Sugars Will Eventually be Exported Transporters) family is ...

    Authors: Li Hao, Xin Shi, Shunwang Qin, Jiahong Dong, Huan Shi, Yuehua Wang and Yi Zhang
    Citation: BMC Genomics 2023 24:378
    Content type: Research Published on:

  11. Basic leucine zipper (bZIP) proteins are important transcription factors in plants. To study the role of bZIP transcription factors in walnut explant browning, this study used bioinformatics software to analyz...

    Authors: Hui Wang, Jiali Peng, Yaoling Li, Lishan Xu, Wenqiang Dai and Shugang Zhao
    Citation: BMC Genomics 2023 24:377
    Content type: Research Published on:

  12. Pedigree-based inbreeding coefficients have been generally included in statistical models for genetic evaluation of Japanese Black cattle. The use of genomic data is expected to provide precise assessment of i...

    Authors: Motohide Nishio, Keiichi Inoue, Shinichiro Ogawa, Kasumi Ichinoseki, Aisaku Arakawa, Yo Fukuzawa, Toshihiro Okamura, Eiji Kobayashi, Masaaki Taniguchi, Mika Oe and Kazuo Ishii
    Citation: BMC Genomics 2023 24:376
    Content type: Research Published on:

  13. Vibrio spp. are a diverse group of ecologically important marine bacteria responsible for several foodborne outbreaks of gastroenteritis around the world. Their detection and characterization are moving away from...

    Authors: Sabrina Flütsch, Fabian Wiestner, Lisa Butticaz, Dominik Moor and Kai N. Stölting
    Citation: BMC Genomics 2023 24:375
    Content type: Research Published on:

  14. Cancer-cachexia (CC) is a debilitating condition affecting up to 80% of cancer patients and contributing to 40% of cancer-related deaths. While evidence suggests biological sex differences in the development o...

    Authors: Francielly Morena da Silva, Seongkyun Lim, Ana Regina Cabrera, Eleanor R. Schrems, Ronald G. Jones, Megan E. Rosa-Caldwell, Tyrone A. Washington, Kevin A. Murach and Nicholas P. Greene
    Citation: BMC Genomics 2023 24:374
    Content type: Research Published on:

  15. Protein kinase CK2 activity is implicated in the pathogenesis of various hematological malignancies like Acute Myeloid Leukemia (AML) that remains challenging concerning treatment. This kinase has emerged as a...

    Authors: Dania Vázquez-Blomquist, Ailyn C. Ramón, Mauro Rosales, George V. Pérez, Ailenis Rosales, Daniel Palenzuela, Yasser Perera and Silvio E. Perea
    Citation: BMC Genomics 2023 24:373
    Content type: Research Published on:

  17. A common feature of single-cell RNA-seq (scRNA-seq) data is that the number of cells in a cell cluster may vary widely, ranging from a few dozen to several thousand. It is not clear whether scRNA-seq data from...

    Authors: Yong Liu, Jing Huang, Rajan Pandey, Pengyuan Liu, Bhavika Therani, Qiongzi Qiu, Sridhar Rao, Aron M. Geurts, Allen W. Cowley Jr, Andrew S. Greene and Mingyu Liang
    Citation: BMC Genomics 2023 24:371
    Content type: Research Published on:

  20. Cell death plays a crucial role in the progression of active tuberculosis (ATB) from latent infection (LTBI). Cuproptosis, a novel programmed cell death, has been reported to be associated with the pathology o...

    Authors: Liang Chen, Jie Hua and Xiaopu He
    Citation: BMC Genomics 2023 24:368
    Content type: Research Published on:

  21. Intramuscular fat (IMF) is closely related to the tenderness, marbling, juiciness, and flavor of meat. We used a combined transcriptome and metabolome analysis to investigate the molecular mechanisms underlyin...

    Authors: Hengwei Yu, Jianfang Wang, Ke Zhang, Gong Cheng, Chugang Mei and Linsen Zan
    Citation: BMC Genomics 2023 24:367
    Content type: Research Published on:

  22. Ulmus mianzhuensis is an endemic tree species in China with high ornamental and economic value. Currently, little is known regarding its genomic architecture, phylogenetic position, or adaptive evolution. Here, w...

    Authors: Nan Lin, Rui Liu, Yakun Wang, Peng Guo, Yihan Wang, Yanpei Liu and Fude Shang
    Citation: BMC Genomics 2023 24:366
    Content type: Research Published on:

  23. The genetics of male fertility is complex and not fully understood. Male subfertility can adversely affect the economics of livestock production. For example, inadvertently mating bulls with poor fertility can...

    Authors: Wei Liang Andre Tan, Laercio Ribeiro Porto Neto, Antonio Reverter, Michael McGowan and Marina Rufino Salinas Fortes
    Citation: BMC Genomics 2023 24:365
    Content type: Research Published on:

  24. The liver is a principal metabolic organ and has a major role in regulating lipid metabolism. With the development of rapidly fattening livestock in the modern breeding industry, the incidence of hepatic steat...

    Authors: Hui Mi, Fan Hu, Kefyalew Gebeyew, Yan Cheng, Ruiping Du, Min Gao, Zhixiong He and Zhiliang Tan
    Citation: BMC Genomics 2023 24:364
    Content type: Research Published on:

  25. Monogenea (Platyhelminthes, Neodermata) are the most species-rich class within the Neodermata superclass of primarily fish parasites. Despite their economic and ecological importance, monogenean research tends...

    Authors: Jiří Vorel, Nikol Kmentová, Christoph Hahn, Petr Bureš and Martin Kašný
    Citation: BMC Genomics 2023 24:363
    Content type: Research Published on:

  26. PYL (Pyrabactin resistance 1-like) protein is a receptor of abscisic acid (ABA), which plays an important role in ABA signaling and influences plant growth and development and stress response. However, studies...

    Authors: Yanlin An, Xiaozeng Mi, Xiaobo Xia, Dahe Qiao, Shirui Yu, Huayan Zheng, Tingting Jing and Feng Zhang
    Citation: BMC Genomics 2023 24:362
    Content type: Research Published on:

  27. The reliability of culture-independent pathogen detection in foods using metagenomics is contingent on the quality and composition of the reference database. The inclusion of microbial sequences from a diverse...

    Authors: Jillian Rumore, Matthew Walker, Franco Pagotto, Jessica D. Forbes, Christy-Lynn Peterson, Andrea D. Tyler, Morag Graham, Gary Van Domselaar, Celine Nadon, Aleisha Reimer and Natalie Knox
    Citation: BMC Genomics 2023 24:361
    Content type: Research Published on:

  29. The taxonomy and infrageneric delimitation of Phalaenopsis Blume has been significantly disputed due to some overlapping morphological features between species related, which needed further evidence for clarifica...

    Authors: Lei Tao, Hanning Duan, Kaifeng Tao, Yan Luo, Qingqing Li and Lu Li
    Citation: BMC Genomics 2023 24:359
    Content type: Research Published on:

  30. WRKY transcription factors are a prominent gene family in plants, playing a crucial role in various biological processes including development, metabolism, defense, differentiation, and stress response. Although ...

    Authors: Quangang Liu, Shipeng Wang, Jiaxing Wen, Jianhua Chen, Yongqiang Sun and Shengjun Dong
    Citation: BMC Genomics 2023 24:358
    Content type: Research Published on:

  31. Hepatocellular carcinoma (HCC), which has a complex pathogenesis and poor prognosis, is one of the most common malignancies worldwide. Hepatitis virus B infection is the most common cause of HCC in Asian patie...

    Authors: Yanjie Wang, Sijia Huang, Yingtian Zhang, Yaping Cheng, Liya Dai, Wenwen Gao, Zhengyang Feng, Jialong Tao and Yusong Zhang
    Citation: BMC Genomics 2023 24:357
    Content type: Research Published on:

  32. The female reproductive tract is exposed directly to the male’s ejaculate, making it a hotspot for mating-induced responses. In Drosophila melanogaster, changes in the reproductive tract are essential to optimize...

    Authors: Sofie Y. N. Delbare, Asha M. Jain, Andrew G. Clark and Mariana F. Wolfner
    Citation: BMC Genomics 2023 24:356
    Content type: Research Published on:

  33. Domestic geese are seasonal breeders and have the lowest reproductive capacity among all poultry species. Magang geese is a topical short-day breeder, short photoperiod exposure stimulates its reproductive act...

    Authors: Jiaxin Liu, Yanglong Xu, Yushuai Wang, Jinning Zhang, Yuting Fu, Sui Liufu, Danli Jiang, Jianqiu Pan, Hongjia Ouyang, Yunmao Huang, Yunbo Tian and Xu Shen
    Citation: BMC Genomics 2023 24:355
    Content type: Research Published on:

  34. BBX proteins play important roles in all of the major light-regulated developmental processes. However, no systematic analysis of BBX gene family regarding the regulation of photoperiodic microtuber formation has...

    Authors: Yingying Chang, Haoyuan Sun, Shiyu Liu, Yulong He, Shanshan Zhao, Jiage Wang, Tianle Wang, Jiangli Zhang, Jin Gao, Qingxiang Yang, Mingjun Li and Xiting Zhao
    Citation: BMC Genomics 2023 24:354
    Content type: Research Published on:

  35. As one of the components of visual photopigments in photoreceptor cells, opsin exhibits different spectral peaks and plays crucial roles in visual function. Besides, it is discovered to evolve other functions ...

    Authors: Jia-Bao Lu, Ze-Dong Li, Zhuang-Xin Ye, Hai-Jian Huang, Jian-Ping Chen, Jun-Min Li and Chuan-Xi Zhang
    Citation: BMC Genomics 2023 24:353
    Content type: Research Published on:

  36. Clonostachys rosea is an established biocontrol agent. Selected strains have either mycoparasitic activity against known pathogens (e.g. Fusarium species) and/or plant growth promoting activity on various crops. ...

    Authors: Adilah Bahadoor, Kelly A. Robinson, Michele C. Loewen and Zerihun A. Demissie
    Citation: BMC Genomics 2023 24:352
    Content type: Research Published on:

  37. The development of the brain requires precise coordination of molecular processes across many cell-types. Underpinning these events are gene expression programs which require intricate regulation by non-coding...

    Authors: Miguel Ramirez, Remi Robert, Joanna Yeung, Joshua Wu, Ayasha Abdalla-Wyse and Daniel Goldowitz
    Citation: BMC Genomics 2023 24:351
    Content type: Research Published on:

  38. Poa annua (annual bluegrass) is an allotetraploid turfgrass, an agronomically significant weed, and one of the most widely dispersed plant species on earth. Here, we report the chromosome-scale genome assemblies ...

    Authors: Christopher W. Benson, Matthew R. Sheltra, Peter J. Maughan, Eric N. Jellen, Matthew D. Robbins, B. Shaun Bushman, Eric L. Patterson, Nathan D. Hall and David R. Huff
    Citation: BMC Genomics 2023 24:350
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2023 24:404

  39. T cell receptor repertoires can be profiled using next generation sequencing (NGS) to measure and monitor adaptive dynamical changes in response to disease and other perturbations. Genomic DNA-based bulk seque...

    Authors: Burcu Gurun, Wesley Horton, Dhaarini Murugan, Biqing Zhu, Patrick Leyshock, Sushil Kumar, Katelyn T. Byrne, Robert H. Vonderheide, Adam A. Margolin, Motomi Mori, Paul T. Spellman, Lisa M. Coussens and Terence P. Speed
    Citation: BMC Genomics 2023 24:349
    Content type: Research article Published on:

  40. Moso bamboo (Phyllostachys edulis) is a typical East Asian bamboo that does not flower for > 60 years and propagates without seed reproduction. Thus, Moso bamboo can be propagated vegetatively, possibly resulting...

    Authors: Norihide Nishiyama, Akihisa Shinozawa, Takashi Matsumoto and Takeshi Izawa
    Citation: BMC Genomics 2023 24:348
    Content type: Research Published on:

  41. In large-scale high-throughput sequencing projects and biobank construction, sample tagging is essential to prevent sample mix-ups. Despite the availability of fingerprint panels for DNA data, little research ...

    Authors: Zhe Xu, Si Cheng, Xin Qiu, Xiaoqi Wang, Qiuwen Hu, Yanfeng Shi, Yang Liu, Jinxi Lin, Jichao Tian, Yongfei Peng, Yong Jiang, Yadong Yang, Jianwei Ye, Yilong Wang, Xia Meng, Zixiao Li…
    Citation: BMC Genomics 2023 24:347
    Content type: Research Published on:

  42. Pinus is the largest genus of Pinaceae and the most primitive group of modern genera. Pines have become the focus of many molecular evolution studies because of their wide use and ecological significance. However...

    Authors: Qijing Xia, Hongbin Zhang, Dong Lv, Yousry A. El-Kassaby and Wei Li
    Citation: BMC Genomics 2023 24:346
    Content type: Research Published on:

  43. Poplar is one of the main urban and rural greening and shade tree species in the northern hemisphere, but its growth and development is always restricted by salt stress. R2R3-MYB transcription factor family is...

    Authors: Jia Hu, Shengqiang Zou, Juanjuan Huang, Xuhui Huan, Xia Jin, Lieding Zhou, Kai Zhao, Youzhi Han and Shengji Wang
    Citation: BMC Genomics 2023 24:345
    Content type: Research Published on:

  44. Tea geometrid Ectropis grisescens (Geometridae: Lepidoptera), is one of the most destructive defoliators in tea plantations in China. The MAPK cascade is known to be an evolutionarily conserved signaling module, ...

    Authors: Xiaozhu Wu, Chenghua Zhou, Xiaofang Li, Jingyi Lin, Luis Carlos Ramos Aguila, Feng Wen and Liande Wang
    Citation: BMC Genomics 2023 24:344
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2023 24:394

  45. The tobacco thrips (Frankliniella fusca Hinds; family Thripidae; order Thysanoptera) is an important pest that can transmit viruses such as the tomato spotted wilt orthotospovirus to numerous economically importa...

    Authors: Michael A. Catto, Paul E. Labadie, Alana L. Jacobson, George G. Kennedy, Rajagopalbabu Srinivasan and Brendan G. Hunt
    Citation: BMC Genomics 2023 24:343
    Content type: Research Published on:

  46. Tibetan chickens (Gallus gallus; TBCs), an indigenous breed distributed in the Qinghai-Tibet Plateau, are well adapted to the hypoxic environment. Currently, the molecular genetic basis of hypoxia adaptation in T...

    Authors: Qiguo Tang, Runjie Yu, Yubei Wang, Fuyin Xie, Hao Zhang, Changxin Wu and Meiying Fang
    Citation: BMC Genomics 2023 24:342
    Content type: Research Published on:

  47. Glutathione S-transferases (GSTs) are large and multifunctional proteases that play an important role in detoxification, protection against biotic and abiotic stresses, and secondary metabolite transportation ...

    Authors: Zejun Mo, Ying Huang, Tianxiunan Pu, Lili Duan, Kai Pi, Jiajun Luo, Benshan Long, Anbin Lu and Renxiang Liu
    Citation: BMC Genomics 2023 24:341
    Content type: Research Published on:

  48. Oriental river prawn (Macrobrachium nipponense) is one of the most dominant species in shrimp farming in China, which is a rich source of protein and contributes to a significant impact on the quality of human li...

    Authors: Cheng-Yan Mou, Qiang Li, Zhi-Peng Huang, Hong-Yu Ke, Han Zhao, Zhong-Meng Zhao, Yuan-Liang Duan, Hua-Dong Li, Yu Xiao, Zhou-Ming Qian, Jun Du, Jian Zhou and Lu Zhang
    Citation: BMC Genomics 2023 24:340
    Content type: Research Published on:

  49. The plant bug, Pachypeltis micranthus Mu et Liu (Hemiptera: Miridae), is an effective potential biological control agent for Mikania micrantha H.B.K. (Asteraceae; one of the most notorious invasive weeds worldwid...

    Authors: Xiafei Wang, Ning Zhao, Liqiong Cai, Naiyong Liu, Jiaying Zhu and Bin Yang
    Citation: BMC Genomics 2023 24:339
    Content type: Research Published on:

  50. Wall associated kinase (WAK) and WAK-like (WAKL) are typical pattern recognition receptors act as the first sentry of plant defense. But little of WAK/WAKL family is known in Rosaceae.

    Authors: Zicheng Wang, Yuan Ma, Meng Chen, Lingling Da, Zhen Su, Zhao Zhang and Xintong Liu
    Citation: BMC Genomics 2023 24:337
    Content type: Research Published on:

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BMC Genomics

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