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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Streptococcus salivarius is an abundant isolate of the human oral microbiota. Since both pH and glucose availability fluctuate frequently in the oral cavity, the goal of this study was to investigate regulation b...

    Authors: Jianing Geng, Szu-Chuan Huang, Yueh-Ying Chen, Cheng-Hsun Chiu, Songnian Hu and Yi-Ywan M. Chen
    Citation: BMC Genomics 2018 19:386
    Content type: Research article Published on:

  2. The American Beech tree (Fagus grandifolia Ehrh.), native to eastern North America, is ecologically important and provides high quality wood products. This species is susceptible to beech bark disease (BBD) and i...

    Authors: Irina Ćalić, Jennifer Koch, David Carey, Charles Addo-Quaye, John E. Carlson and David B. Neale
    Citation: BMC Genomics 2017 18:547
    Content type: Research article Published on:

  3. Next Generation Sequencing has proven to be an exceptionally powerful tool in the field of genomics and transcriptomics. With recent development it is nowadays possible to analyze ultra-low input sample materi...

    Authors: Florian Mertes, Björn Lichtner, Heiner Kuhl, Mirjam Blattner, Jörg Otte, Wasco Wruck, Bernd Timmermann, Hans Lehrach and James Adjaye
    Citation: BMC Genomics 2015 16:925
    Content type: Research article Published on:

  5. Entomopathogenic associations between nematodes in the genera Steinernema and Heterorhabdus with their cognate bacteria from the bacterial genera Xenorhabdus and Photorhabdus, respectively, are extensively studie...

    Authors: Feseha Abebe-Akele, Louis S. Tisa, Vaughn S. Cooper, Philip J. Hatcher, Eyualem Abebe and W. Kelley Thomas
    Citation: BMC Genomics 2015 16:531
    Content type: Research article Published on:

  6. Human herpesvirus-6A and -6B (HHV-6) are betaherpesviruses that reach > 90% seroprevalence in the adult population. Unique among human herpesviruses, HHV-6 can integrate into the subtelomeric regions of human ...

    Authors: Alexander L. Greninger, Giselle M. Knudsen, Pavitra Roychoudhury, Derek J. Hanson, Ruth Hall Sedlak, Hong Xie, Jon Guan, Thuy Nguyen, Vikas Peddu, Michael Boeckh, Meei-Li Huang, Linda Cook, Daniel P. Depledge, Danielle M. Zerr, David M. Koelle, Soren Gantt…
    Citation: BMC Genomics 2018 19:204
    Content type: Research article Published on:

  7. Phytophthora root and stem rot is one of the most yield-limiting diseases of soybean [Glycine max (L.) Merr], caused by the oomycete Phytophthora sojae. Partial resistance is controlled by several genes and, comp...

    Authors: Rhiannon Schneider, William Rolling, Qijian Song, Perry Cregan, Anne E. Dorrance and Leah K. McHale
    Citation: BMC Genomics 2016 17:607
    Content type: Research article Published on:

  8. Infection outcome in some coevolving host-pathogens is characterised by host-pathogen genetic interactions, where particular host genotypes are susceptible only to a subset of pathogen genotypes. To identify c...

    Authors: Seanna J. McTaggart, Timothée Cézard, Jennie S. Garbutt, Phil J. Wilson and Tom J. Little
    Citation: BMC Genomics 2015 16:643
    Content type: Research article Published on:

  9. Genome wide association studies (GWAS) on residual feed intake (RFI) and its component traits including daily dry matter intake (DMI), average daily gain (ADG), and metabolic body weight (MWT) were conducted i...

    Authors: Feng Zhang, Yining Wang, Robert Mukiibi, Liuhong Chen, Michael Vinsky, Graham Plastow, John Basarab, Paul Stothard and Changxi Li
    Citation: BMC Genomics 2020 21:36
    Content type: Research article Published on:

  10. Whales have captivated the human imagination for millennia. These incredible cetaceans are the only mammals that have adapted to life in the open oceans and have been a source of human food, fuel and tools aro...

    Authors: Jung Youn Park, Yong-Rock An, Naohisa Kanda, Chul-Min An, Hye Suck An, Jung-Ha Kang, Eun Mi Kim, Du-Hae An, Hojin Jung, Myunghee Joung, Myung Hum Park, Sook Hee Yoon, Bo-Young Lee, Taeheon Lee, Kyu-Won Kim, Won Cheoul Park…
    Citation: BMC Genomics 2015 16:13
    Content type: Research article Published on:

  12. Members of the AT-HOOK MOTIF CONTAINING NUCLEAR LOCALIZED (AHL) family are involved in various plant biological processes via protein-DNA and protein-protein interaction. However, no the systematic identification...

    Authors: Lanjie Zhao, Youjun Lü, Wei Chen, Jinbo Yao, Yan Li, Qiulin Li, Jingwen Pan, Shengtao Fang, Jie Sun and Yongshan Zhang
    Citation: BMC Genomics 2020 21:69
    Content type: Research article Published on:

  13. The relict gull (Larus relictus), was classified as vulnerable on the IUCN Red List and is a first-class national protected bird in China. Genomic resources for L. relictus are lacking, which limits the study of ...

    Authors: Chao Yang, Xuejuan Li, Qingxiong Wang, Hao Yuan, Yuan Huang and Hong Xiao
    Citation: BMC Genomics 2021 22:311
    Content type: Research article Published on:

  14. The switch from photosynthetic or predatory to parasitic life strategies by apicomplexans is accompanied with a reductive evolution of genomes and losses of metabolic capabilities. Cryptosporidium is an extreme e...

    Authors: Shiyou Liu, Dawn M. Roellig, Yaqiong Guo, Na Li, Michael A. Frace, Kevin Tang, Longxian Zhang, Yaoyu Feng and Lihua Xiao
    Citation: BMC Genomics 2016 17:1006
    Content type: Research article Published on:

  15. The function of the prion protein, involved in the so-called prion diseases, remains a subject of intense debate and the possibility that it works as a pleiotropic protein through the interaction with multiple...

    Authors: J. A. Macedo, D. Schrama, I. Duarte, E. Tavares, J. Renaut, M. E. Futschik, P. M. Rodrigues and E. P. Melo
    Citation: BMC Genomics 2017 18:319
    Content type: Research article Published on:

  16. Cornu aspersum is a quite intriguing species from the point of view of ecology and evolution and its potential use in medical and environmental applications. It is a species of economi...

    Authors: Aristeidis Parmakelis, Panayiota Kotsakiozi, Christos K. Kontos, Panagiotis G. Adamopoulos and Andreas Scorilas
    Citation: BMC Genomics 2017 18:491
    Content type: Research article Published on:

  17. Recent large-scale whole genome sequencing efforts in birds have elucidated broad patterns of avian phylogeny and genome evolution. However, despite the great interest in economically important phasianids like Ga...

    Authors: G. P. Tiley, R. T. Kimball, E. L. Braun and J. G. Burleigh
    Citation: BMC Genomics 2018 19:336
    Content type: Research article Published on:

  18. The cytochromes P450 (P450s) are a large superfamily of heme-containing monooxygenases involved in the oxidative metabolism of an enormous diversity of substrates. These enzymes require electrons for their act...

    Authors: Pamela Córdova, Ana-María Gonzalez, David R. Nelson, María-Soledad Gutiérrez, Marcelo Baeza, Víctor Cifuentes and Jennifer Alcaíno
    Citation: BMC Genomics 2017 18:540
    Content type: Research article Published on:

  19. WD40 domains are abundant in eukaryotes, and they are essential subunits of large multiprotein complexes, which serve as scaffolds. WD40 proteins participate in various cellular processes, such as histone modi...

    Authors: Rui Hu, Jie Xiao, Ting Gu, Xiaofen Yu, Yang Zhang, Junli Chang, Guangxiao Yang and Guangyuan He
    Citation: BMC Genomics 2018 19:803
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2018 19:852

  20. While pooled loss- and gain-of-function CRISPR screening approaches have become increasingly popular to systematically investigate mammalian gene function, the large majority of them have thus far not investig...

    Authors: Michael Boettcher, Sergio Covarrubias, Anne Biton, James Blau, Haopeng Wang, Noah Zaitlen and Michael T. McManus
    Citation: BMC Genomics 2019 20:107
    Content type: Research article Published on:

  21. DNA N4-methylcytosine (4mC) is a critical epigenetic modification and has various roles in the restriction-modification system. Due to the high cost of experimental laboratory detection, computational methods ...

    Authors: Zhixun Zhao, Xiaocai Zhang, Fang Chen, Liang Fang and Jinyan Li
    Citation: BMC Genomics 2020 21:627
    Content type: Research article Published on:

  22. Bovine arthrogryposis multiplex congenita (AMC) is a syndromic term for a congenital condition characterized by multiple joint contractures. Rare inherited forms of bovine AMC have been reported in different b...

    Authors: Jørgen S. Agerholm, Fintan J. McEvoy, Fiona Menzi, Vidhya Jagannathan and Cord Drögemüller
    Citation: BMC Genomics 2016 17:479
    Content type: Research article Published on:

  23. Prior to egg laying the parasitoid wasp Nasonia vitripennis envenomates its pupal host with a complex mixture of venom peptides. This venom induces several dramatic changes in the host, including developmental ar...

    Authors: Andre D. Sim and David Wheeler
    Citation: BMC Genomics 2016 17:571
    Content type: Research article Published on:

  25. Genomic structural variation represents a source for genetic and phenotypic variation, which may be subject to selection during the environmental adaptation and population differentiation. Here, we described a...

    Authors: Hui Wang, Zhixin Chai, Dan Hu, Qiumei Ji, Jinwei Xin, Chengfu Zhang and Jincheng Zhong
    Citation: BMC Genomics 2019 20:61
    Content type: Research article Published on:

  26. Pine moths (Lepidoptera; Bombycoidea; Lasiocampidae: Dendrolimus spp.) are among the most serious insect pests of forests, especially in southern China. Although COI barcodes (a standardized portion of the mitoch...

    Authors: Jie Qin, Yanzhou Zhang, Xin Zhou, Xiangbo Kong, Shujun Wei, Robert D Ward and Ai-bing Zhang
    Citation: BMC Genomics 2015 16:428
    Content type: Research article Published on:

  27. Salix matsudana Koidz. is a fast growing tree species. It has a high cadmium (Cd) tolerance capacity, making it potentially suitable for phytoremediation. Presently, transcriptomic and...

    Authors: Jingli Yang, Kun Li, Wei Zheng, Haizhen Zhang, Xudong Cao, Yunxiang Lan, Chuanping Yang and Chenghao Li
    Citation: BMC Genomics 2015 16:705
    Content type: Research article Published on:

  28. Estimation of functional connectivity in gene sets derived from genome-wide or other biological experiments is one of the essential tasks of bioinformatics. A promising approach for solving this problem is to ...

    Authors: Evgeny S. Tiys, Timofey V. Ivanisenko, Pavel S. Demenkov and Vladimir A. Ivanisenko
    Citation: BMC Genomics 2018 19(Suppl 3):76
    Content type: Software Published on:

    This article is part of a Supplement: Volume 19 Supplement 3

  30. Aeromonads make up a group of Gram-negative bacteria that includes human and fish pathogens. The Aeromonas salmonicida species has the peculiarity of including five known subspecies. However, few studies of the g...

    Authors: Antony T. Vincent, Mélanie V. Trudel, Luca Freschi, Vandan Nagar, Cynthia Gagné-Thivierge, Roger C. Levesque and Steve J. Charette
    Citation: BMC Genomics 2016 17:44
    Content type: Research article Published on:

  31. Fish gut microbial assemblages play a crucial role in the growth rate, metabolism, and immunity of the host. We hypothesized that the gut microbiota of rainbow trout was correlated with breeding program based ...

    Authors: Pratima Chapagain, Donald Walker, Tim Leeds, Beth M. Cleveland and Mohamed Salem
    Citation: BMC Genomics 2020 21:820
    Content type: Research article Published on:

  32. The Oomycete genus Aphanomyces comprises devastating plant and animal pathogens. However, little is known about the molecular mechanisms underlying pathogenicity of Aphanomyces species. In this study, we report o...

    Authors: Mohammed-Amine Madoui, Elodie Gaulin, Catherine Mathé, Hélène San Clemente, Arnaud Couloux, Patrick Wincker and Bernard Dumas
    Citation: BMC Genomics 2007 8:471
    Content type: Database Published on:

  33. The mechanism of egg formation in the oviduct of laying hens is tightly controlled; each segment of the oviduct contributes a unique component of the egg. Several genes/proteins are involved in the synthesis o...

    Authors: Nirvay Sah, Donna Lee Kuehu, Vedbar Singh Khadka, Youping Deng, Rajesh Jha, Sanjeev Wasti and Birendra Mishra
    Citation: BMC Genomics 2021 22:318
    Content type: Research article Published on:

  34. To continue to meet the increasing demands of soybean worldwide, it is crucial to identify key genes regulating flowering and maturity to expand the cultivated regions into short season areas. Although four so...

    Authors: Tanya R. Copley, Marc-Olivier Duceppe and Louise S. O’Donoughue
    Citation: BMC Genomics 2018 19:167
    Content type: Research article Published on:

  36. Glutathione S-transferases (GSTs) are large and multifunctional proteases that play an important role in detoxification, protection against biotic and abiotic stresses, and secondary metabolite transportation ...

    Authors: Zejun Mo, Ying Huang, Tianxiunan Pu, Lili Duan, Kai Pi, Jiajun Luo, Benshan Long, Anbin Lu and Renxiang Liu
    Citation: BMC Genomics 2023 24:341
    Content type: Research Published on:

  37. Structural variants (SVs) are chromosomal segments that differ between genomes, such as deletions, duplications, insertions, inversions and translocations. The genomics revolution enabled the discovery of sub-...

    Authors: Young-Lim Lee, Mirte Bosse, Haruko Takeda, Gabriel Costa Monteiro Moreira, Latifa Karim, Tom Druet, Claire Oget-Ebrad, Wouter Coppieters, Roel F. Veerkamp, Martien A. M. Groenen, Michel Georges, Aniek C. Bouwman and Carole Charlier
    Citation: BMC Genomics 2023 24:225
    Content type: Research Published on:

  38. Sugarcane (Saccharum spp.) is predominantly an autopolyploid plant with a variable ploidy level, frequent aneuploidy and a large genome that hampers investigation of its organization. Genetic architecture studies...

    Authors: Thiago Willian Almeida Balsalobre, Guilherme da Silva Pereira, Gabriel Rodrigues Alves Margarido, Rodrigo Gazaffi, Fernanda Zatti Barreto, Carina Oliveira Anoni, Cláudio Benício Cardoso-Silva, Estela Araújo Costa, Melina Cristina Mancini, Hermann Paulo Hoffmann, Anete Pereira de Souza, Antonio Augusto Franco Garcia and Monalisa Sampaio Carneiro
    Citation: BMC Genomics 2017 18:72
    Content type: Regular article Published on:

  39. Lysine 2-hydroxyisobutyrylation (Khib) is a newly discovered protein posttranslational modification (PTM) and is involved in the broad-spectrum regulation of cellular processes that are found in both prokaryotic ...

    Authors: Tong Qi, Jinping Li, Huifang Wang, Xiaofan Han, Junrong Li and Jinzhe Du
    Citation: BMC Genomics 2021 22:542
    Content type: Research Published on:

  40. Our previous study finds that male sterility in Salvia miltiorrhiza could result in stunted growth and reduced biomass, but their molecular mechanisms have not yet been revealed. In this article, we investigate t...

    Authors: Ruihong Wang, Han Jiang, Ziyun Zhou, Hongbo Guo and Juane Dong
    Citation: BMC Genomics 2019 20:780
    Content type: Research article Published on:

  41. High throughput experiments resulted in many genomic datasets and hundreds of candidate disease genes. To discover the real disease genes from a set of candidate genes, computational methods have been proposed...

    Authors: Yongjin Li and Jinyan Li
    Citation: BMC Genomics 2012 13(Suppl 7):S27
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 13 Supplement 7

  42. Switchgrass, a warm-season perennial grass studied as a potential dedicated biofuel feedstock, is classified into two main taxa – lowland and upland ecotypes – that differ in morphology and habitat of adaptati...

    Authors: Desalegn D. Serba, Srinivasa Rao Uppalapati, Nick Krom, Shreyartha Mukherjee, Yuhong Tang, Kirankumar S. Mysore and Malay C. Saha
    Citation: BMC Genomics 2016 17:1040
    Content type: Research article Published on:

  43. Research on the submergence stress of rice has concentrated on the quiescence strategy to survive in long-term flooding conditions based on Submergence-1A (SUB1A). In the case of the ripening period, it is imp...

    Authors: Hyeon Seok Lee, Woon Ha Hwang, Jae Hyeok Jeong, Seung Hyeon Ahn, Jeong Seon Baek, Han Yong Jeong, Hong Kyu Park, Bon Il Ku, Jong Tak Yun, Geon Hwi Lee and Kyung Jin Choi
    Citation: BMC Genomics 2019 20:18
    Content type: Research article Published on:

  44. Calcineurin B-like protein (CBL)-interacting protein kinases (CIPKs) are the primary components of calcium sensors, and play crucial roles in plant developmental processes, hormone signaling transduction, and ...

    Authors: Weihua Su, Yongjuan Ren, Dongjiao Wang, Long Huang, Xueqin Fu, Hui Ling, Yachun Su, Ning Huang, Hanchen Tang, Liping Xu and Youxiong Que
    Citation: BMC Genomics 2020 21:868
    Content type: Research article Published on:

  45. The basidiomycete fungus Moniliophthora perniciosa is the causal agent of Witches' Broom Disease (WBD) in cacao (Theobroma cacao). It is a hemibiotrophic pathogen that colonizes the apoplast of cacao's meristemat...

    Authors: Jorge MC Mondego, Marcelo F Carazzolle, Gustavo GL Costa, Eduardo F Formighieri, Lucas P Parizzi, Johana Rincones, Carolina Cotomacci, Dirce M Carraro, Anderson F Cunha, Helaine Carrer, Ramon O Vidal, Raíssa C Estrela, Odalys García, Daniela PT Thomazella, Bruno V de Oliveira, Acássia BL Pires…
    Citation: BMC Genomics 2008 9:548
    Content type: Research article Published on:

  46. Glutathione transferases (GSTs), the ancient, ubiquitous and multi-functional proteins, play significant roles in development, metabolism as well as abiotic and biotic stress responses in plants. Wheat is one ...

    Authors: Ruibin Wang, Jingfei Ma, Qian Zhang, Chunlai Wu, Hongyan Zhao, Yanan Wu, Guangxiao Yang and Guangyuan He
    Citation: BMC Genomics 2019 20:986
    Content type: Research article Published on:

  47. Drought stress is a major limiting factor of soybean [Glycine max (L.) Merr.] production around the world. Soybean plants can ameliorate this stress with improved water-saving, sustained N2 fixation during water ...

    Authors: Clinton J. Steketee, Thomas R. Sinclair, Mandeep K. Riar, William T. Schapaugh and Zenglu Li
    Citation: BMC Genomics 2019 20:811
    Content type: Research article Published on:

  48. Bi-parental mapping populations have been commonly utilized to identify and characterize quantitative trait loci (QTL) controlling resistance to soybean cyst nematode (SCN, Heterodera glycines Ichinohe). Although...

    Authors: T. D. Vuong, H. Sonah, C. G. Meinhardt, R. Deshmukh, S. Kadam, R. L. Nelson, J. G. Shannon and H. T. Nguyen
    Citation: BMC Genomics 2015 16:593
    Content type: Research article Published on:

  49. Kiwi represent the most basal extant avian lineage (paleognaths) and exhibit biological attributes that are unusual or extreme among living birds, such as large egg size, strong olfaction, nocturnality, flight...

    Authors: Kristina M. Ramstad, Hilary C. Miller and Gabriel Kolle
    Citation: BMC Genomics 2016 17:410
    Content type: Research article Published on:

  50. Venom has evolved in parallel in multiple animals for the purpose of self-defense, prey capture or both. These venoms typically consist of highly complex mixtures of toxins: diverse bioactive peptides and/or p...

    Authors: Dwin G. B. Grashof, Harald M. I. Kerkkamp, Sandra Afonso, John Archer, D. James Harris, Michael K. Richardson, Freek J. Vonk and Arie van der Meijden
    Citation: BMC Genomics 2019 20:645
    Content type: Research article Published on:

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