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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Barley, globally the fourth most important cereal, provides food and beverages for humans and feed for animal husbandry. Maximizing grain yield under varying climate conditions largely depends on the optimal t...

    Authors: Andreas Maurer, Vera Draba, Yong Jiang, Florian Schnaithmann, Rajiv Sharma, Erika Schumann, Benjamin Kilian, Jochen Christoph Reif and Klaus Pillen
    Citation: BMC Genomics 2015 16:290
    Content type: Research article Published on:

  2. The Mediterranean diet is considered one of the healthier food habits and olive oil is one of its key components. Olive oil polyphenols are known to induce beneficial effects in several pathological conditions...

    Authors: Marcella Sabino, Katia Cappelli, Stefano Capomaccio, Luisa Pascucci, Ilaria Biasato, Andrea Verini-Supplizi, Andrea Valiani and Massimo Trabalza-Marinucci
    Citation: BMC Genomics 2018 19:576
    Content type: Research article Published on:

  3. Targeting Induced Local Lesions in Genomes (TILLING) is a powerful reverse genetics approach for functional genomics studies. We used high-throughput sequencing, combined with a two-dimensional pooling strateg...

    Authors: Yufang Guo, Brian Abernathy, Yajuan Zeng and Peggy Ozias-Akins
    Citation: BMC Genomics 2015 16:157
    Content type: Research article Published on:

  4. Barley seed proteins are of prime importance to the brewing industry, human and animal nutrition and in plant breeding for cultivar identification. To obtain comprehensive proteomic data from seeds, total prot...

    Authors: Ramamurthy Mahalingam
    Citation: BMC Genomics 2017 18:44
    Content type: Research Article Published on:

  5. Reproductive capacity can be altered by challenges experienced during critical periods of development, including fetal development and early neonatal life. Gossypol is a polyphenolic compound, commonly found i...

    Authors: Helder Louvandini, Patricia S. Corrêa, Rocío Amorín, Lihe Liu, Egon H. Ieda, Carolina R. Jimenez, Siu M. Tsai, Concepta M. McManus and Francisco Peñagaricano
    Citation: BMC Genomics 2020 21:59
    Content type: Research article Published on:

  6. Annotation of gene models and transcripts is a fundamental step in genome sequencing projects. Often this is performed with automated prediction pipelines, which can miss complex and atypical genes or transcri...

    Authors: Reema Singh, Hajara M. Lawal, Christina Schilde, Gernot Glöckner, Geoffrey J. Barton, Pauline Schaap and Christian Cole
    Citation: BMC Genomics 2017 18:120
    Content type: Research article Published on:

  8. Brassica oleracea exhibits extensive phenotypic diversity. As an important trait, petal color varies among different B. oleracea cultivars, enabling the study of the genetic basis of this trait. In a previous stu...

    Authors: Fengqing Han, Huilin Cui, Bin Zhang, Xiaoping Liu, Limei Yang, Mu Zhuang, Honghao Lv, Zhansheng Li, Yong Wang, Zhiyuan Fang, Jianghua Song and Yangyong Zhang
    Citation: BMC Genomics 2019 20:242
    Content type: Research article Published on:

  9. Acute myeloid leukemia with complex karyotype (CK-AML) is a distinct biological entity associated with a very poor outcome. Since complex karyotypes frequently contain deletions of the chromosomal region 12p13...

    Authors: Simone Feurstein, Frank G Rücker, Lars Bullinger, Winfried Hofmann, Georgi Manukjan, Gudrun Göhring, Ulrich Lehmann, Michael Heuser, Arnold Ganser, Konstanze Döhner, Brigitte Schlegelberger and Doris Steinemann
    Citation: BMC Genomics 2014 15:784
    Content type: Research article Published on:

  10. Barley is the world’s fourth most cultivated cereal and is an important crop model for genetic studies. One layer of genomic information that remains poorly explored in barley is presence/absence variation (PA...

    Authors: Marius Weisweiler, Amaury de Montaigu, David Ries, Mara Pfeifer and Benjamin Stich
    Citation: BMC Genomics 2019 20:787
    Content type: Research Article Published on:

  11. In biomedical research, gene expression profiling studies have been extensively conducted. The analysis of gene expression data has led to a deeper understanding of human genetics as well as practically useful...

    Authors: Sebastian J. Teran Hidalgo, Mengyun Wu and Shuangge Ma
    Citation: BMC Genomics 2017 18:623
    Content type: Methodology Article Published on:

  12. Citrus are among the most important crops in the world. However, there are many diseases that affect Citrus caused by different pathogens. Citrus also hosts many symbiotic microorganisms in a relationship that...

    Authors: Carolina Munari Rodrigues, Marco Aurélio Takita, Nicholas Vinicius Silva, Marcelo Ribeiro-Alves and Marcos Antonio Machado
    Citation: BMC Genomics 2019 20:554
    Content type: Research article Published on:

  13. Bermudagrass (Cynodon dactylon L.) is an important turfgrass species with two types of stems, shoots and stolons. Despite their importance in determining the morphological variance and plasticity of bermudagrass,...

    Authors: Bing Zhang, Jibiao Fan and Jianxiu Liu
    Citation: BMC Genomics 2019 20:708
    Content type: Research article Published on:

  14. Excess fat content in chickens has a negative impact on poultry production. The discovery of QTL associated with fat deposition in the carcass allows the identification of positional candidate genes (PCGs) tha...

    Authors: Gabriel Costa Monteiro Moreira, Clarissa Boschiero, Aline Silva Mello Cesar, James M. Reecy, Thaís Fernanda Godoy, Priscila Anchieta Trevisoli, Maurício E. Cantão, Mônica Corrêa Ledur, Adriana Mércia Guaratini Ibelli, Jane de Oliveira Peixoto, Ana Silvia Alves Meira Tavares Moura, Dorian Garrick and Luiz Lehmann Coutinho
    Citation: BMC Genomics 2018 19:374
    Content type: Research article Published on:

  15. Rhodococci are industrially important soil-dwelling Gram-positive bacteria that are well known for both nitrile hydrolysis and oxidative metabolism of aromatics. Rhodococcus rhodochrous ATCC BAA-870 is capable of...

    Authors: Joni Frederick, Fritha Hennessy, Uli Horn, Pilar de la Torre Cortés, Marcel van den Broek, Ulrich Strych, Richard Willson, Charles A. Hefer, Jean-Marc G. Daran, Trevor Sewell, Linda G. Otten and Dean Brady
    Citation: BMC Genomics 2020 21:3
    Content type: Research article Published on:

  16. Natural and artificial selection leads to changes in certain regions of the genome resulting in selection signatures that can reveal genes associated with the selected traits. Selection signatures may be ident...

    Authors: Octávio Augusto Costa Almeida, Gabriel Costa Monteiro Moreira, Fernanda Marcondes Rezende, Clarissa Boschiero, Jane de Oliveira Peixoto, Adriana Mercia Guaratini Ibelli, Mônica Corrêa Ledur, Francisco José de Novais and Luiz Lehmann Coutinho
    Citation: BMC Genomics 2019 20:449
    Content type: Research article Published on:

  17. The process of gene fusion involves the formation of a single chimeric gene from multiple complete or partial gene sequences. Gene fusion is recognized as an important mechanism by which genes and their protei...

    Authors: Shannon J. Sibbald, Julia F. Hopkins, Gina V. Filloramo and John M. Archibald
    Citation: BMC Genomics 2019 20:38
    Content type: Review Published on:

  18. Second generation lignocellulosic feedstocks are being considered as an alternative to first generation biofuels that are derived from grain starches and sugars. However, the current pre-treatment methods for ...

    Authors: Swapna Priya Rajarapu, Jacob T Shreve, Ketaki P Bhide, Jyothi Thimmapuram and Michael E Scharf
    Citation: BMC Genomics 2015 16:332
    Content type: Research article Published on:

  19. In recent years, increased attention has been focused on breast muscle yield and meat quality in poultry production. Supplementation with nicotinamide and butyrate sodium can improve the meat quality of broile...

    Authors: Yuqin Wu, Youli Wang, Dafei Yin, Tahir Mahmood and Jianmin Yuan
    Citation: BMC Genomics 2020 21:412
    Content type: Research article Published on:

  21. Functional communications between nervous, endocrine and immune systems are well established in both vertebrates and invertebrates. Circulating hemocytes act as fundamental players in this crosstalk, whose fun...

    Authors: Fuxuan Wang, Shihao Li, Jianhai Xiang and Fuhua Li
    Citation: BMC Genomics 2019 20:247
    Content type: Research article Published on:

  22. Pine trees challenged by Bursaphelenchus xylophilus invasion produce phytoalexins to combat this nematode. Nevertheless, the phytoalexins of Asian pine trees are ineffective against B. xylophilus. The anti-phytoa...

    Authors: Feng Wang, Qiaoli Chen, Ruizhi Zhang, Danlei Li, Yaming Ling and Ruiqing Song
    Citation: BMC Genomics 2019 20:779
    Content type: Research article Published on:

  23. Cell-penetrating peptides (CPPs) are short peptides (5–30 amino acids) that can enter almost any cell without significant damage. On account of their high delivery efficiency, CPPs are promising candidates for...

    Authors: Leyi Wei, Jijun Tang and Quan Zou
    Citation: BMC Genomics 2017 18(Suppl 7):742
    Content type: Research Published on:

    This article is part of a Supplement: Volume 18 Supplement 7

  24. Verticillium wilt is one of the most destructive diseases affecting global cotton production. The most effective way to control wilt disease has been the development of new cotton varieties that are resistant ...

    Authors: Yunlei Zhao, Hongmei Wang, Wei Chen, Pei Zhao, Haiyan Gong, Xiaohui Sang and Yanli Cui
    Citation: BMC Genomics 2017 18:661
    Content type: Research article Published on:

  25. Capacitation, a prerequisite for oocyte fertilization, is a complex process involving series of structural and functional changes in sperms such as membrane modifications, modulation of enzyme activities, and ...

    Authors: Yuan Li, Rong-Hong Li, Ming-Xia Ran, Yan Zhang, Kai Liang, Ying-Nan Ren, Wen-Cheng He, Ming Zhang, Guang-Bin Zhou, Izhar Hyder Qazi and Chang-Jun Zeng
    Citation: BMC Genomics 2018 19:736
    Content type: Research article Published on:

  26. Most microbial eukaryotes are uncultivated and thus poorly suited to standard genomic techniques. This is the case for Polykrikos lebouriae, a dinoflagellate with ultrastructurally aberrant plastids. It has been ...

    Authors: Gregory S. Gavelis, Richard A. White III, Curtis A. Suttle, Patrick J. Keeling and Brian S. Leander
    Citation: BMC Genomics 2015 16:528
    Content type: Research article Published on:

  27. Bixin or annatto is a commercially important natural orange-red pigment derived from lycopene that is produced and stored in seeds of Bixa orellana L. An enzymatic pathway for bixin biosynthesis was inferred from...

    Authors: Yair Cárdenas-Conejo, Víctor Carballo-Uicab, Meric Lieberman, Margarita Aguilar-Espinosa, Luca Comai and Renata Rivera-Madrid
    Citation: BMC Genomics 2015 16:877
    Content type: Research article Published on:

  28. Several lines of evidence suggest that recombination plays a central role in replication and evolution of herpes simplex virus-1 (HSV-1). G-quadruplex (G4)-motifs have been linked to recombination events in hu...

    Authors: Nandhini Saranathan, Banhi Biswas, Anupam Patra and Perumal Vivekanandan
    Citation: BMC Genomics 2019 20:382
    Content type: Research article Published on:

  29. The liver plays important roles in nutrient metabolism, detoxification and immunity. Enterococcus faecium (E. faecium) is a probiotic that has been shown to have positive effects on broiler production. However, i...

    Authors: Aijuan Zheng, Jianjie Luo, Kun Meng, Jianke Li, Wayne L. Bryden, Wenhuan Chang, Shu Zhang, L. X. N. Wang, Guohua Liu and Bin Yao
    Citation: BMC Genomics 2016 17:89
    Content type: Research article Published on:

  30. Meloidogyne incognita is a devastating nematode that causes significant losses in cucumber production worldwide. Although numerous studies have emphasized on the susceptible response of plants after nematode infe...

    Authors: Xing Wang, Chunyan Cheng, Kaijing Zhang, Zhen Tian, Jian Xu, Shuqiong Yang, Qunfeng Lou, Ji Li and Jin-Feng Chen
    Citation: BMC Genomics 2018 19:583
    Content type: Research article Published on:

  31. Maize was originally domesticated in a tropical environment but is now widely cultivated at temperate latitudes. Temperate and tropical maize populations have diverged both genotypically and phenotypically. Tr...

    Authors: Xianjun Lai, James C. Schnable, Zhengqiao Liao, Jie Xu, Gengyun Zhang, Chuan Li, Erliang Hu, Tingzhao Rong, Yunbi Xu and Yanli Lu
    Citation: BMC Genomics 2017 18:702
    Content type: Research article Published on:

  32. The merging of two divergent genomes during hybridization can result in the remodeling of parental gene expression in hybrids. A molecular basis underling expression change in hybrid is regulatory divergence, ...

    Authors: Min Zhang, Yi-Wei Tang, Ji Qi, Xin-Kai Liu, Dan-Feng Yan, Nai-Sheng Zhong, Nai-Qi Tao, Ji-Yin Gao, Yu-Guo Wang, Zhi-Ping Song, Ji Yang and Wen-Ju Zhang
    Citation: BMC Genomics 2019 20:828
    Content type: Research article Published on:

  33. Previous genome-wide association analyses identified QTL regions in the X chromosome for percentage of normal sperm and scrotal circumference in Brahman and Tropical Composite cattle. These traits are importan...

    Authors: Gregório Miguel Ferreira de Camargo, Laercio R Porto-Neto, Matthew J Kelly, Rowan J Bunch, Sean M McWilliam, Humberto Tonhati, Sigrid A Lehnert, Marina R S Fortes and Stephen S Moore
    Citation: BMC Genomics 2015 16:384
    Content type: Research article Published on:

  34. The annual killifish Austrofundulus limnaeus inhabits ephemeral ponds in northern Venezuela, South America, and is an emerging extremophile model for vertebrate diapause, stress tolerance, and evolution. Embryos ...

    Authors: Josiah T. Wagner, Param Priya Singh, Amie L. Romney, Claire L. Riggs, Patrick Minx, Steven C. Woll, Jake Roush, Wesley C. Warren, Anne Brunet and Jason E. Podrabsky
    Citation: BMC Genomics 2018 19:155
    Content type: Research article Published on:

  35. microRNAs (miRNAs) play an essential role in the post-transcriptional gene regulation in plants and animals. They regulate a wide range of biological processes by targeting messenger RNAs (mRNAs). Evidence sug...

    Authors: S. M. Masud Karim, Lin Liu, Thuc Duy Le and Jiuyong Li
    Citation: BMC Genomics 2016 17(Suppl 1):7
    Content type: Research Published on:

    This article is part of a Supplement: Volume 17 Supplement 1

  36. Transcriptomics is being increasingly applied to generate new insight into the interactions between plants and their pathogens. For the wheat yellow (stripe) rust pathogen (Puccinia striiformis f. sp. tritici, Ps...

    Authors: Thomas M. Adams, Tjelvar S. G. Olsson, Ricardo H. Ramírez-González, Ruth Bryant, Rosie Bryson, Pablo Eduardo Campos, Paul Fenwick, David Feuerhelm, Charlotte Hayes, Tina Henriksson, Amelia Hubbard, Radivoje Jevtić, Christopher Judge, Matthew Kerton, Jacob Lage, Clare M. Lewis…
    Citation: BMC Genomics 2021 22:166
    Content type: Database Published on:

  37. Cinnamomum camphora has been cultivated as an economically important tree for its medicinal and aromatic properties. Selective breeding has produced Cinnamomum plants for special uses, including spice strains wit...

    Authors: Caihui Chen, Yongjie Zheng, Yongda Zhong, Yangfang Wu, Zhiting Li, Li-An Xu and Meng Xu
    Citation: BMC Genomics 2018 19:550
    Content type: Research article Published on:

  38. The challenges when developing a good de novo transcriptome assembler include how to deal with read errors and sequence repeats. Almost all de novo assemblers utilize a de Bruijn graph, with which complexity g...

    Authors: Seokhyun Yoon, Daeseung Kim, Keunsoo Kang and Woong June Park
    Citation: BMC Genomics 2018 19:653
    Content type: Software Published on:

  39. Pectin methylesterase (PME, EC 3.1.1.11) is a hydrolytic enzyme that utilizes pectin as substrates, and plays a significant role in regulating pectin reconstruction thereby regulating plant growth. Pectin is o...

    Authors: Weijie Li, Haihong Shang, Qun Ge, Changsong Zou, Juan Cai, Daojie Wang, Senmiao Fan, Zhen Zhang, Xiaoying Deng, Yunna Tan, Weiwu Song, Pengtao Li, Palanga Kibalou Koffi, Muhammad Jamshed, Quanwei Lu, Wankui Gong…
    Citation: BMC Genomics 2016 17:1000
    Content type: Research article Published on:

  40. Hybridization and polyploidization are regarded as the major driving forces in plant speciation, diversification, and ecological adaptation. Our knowledge regarding the mechanisms of duplicated-gene regulation...

    Authors: Wuhui Li, Junmei Liu, Hui Tan, Lingling Luo, Jialin Cui, Jie Hu, Shi Wang, Qingfeng Liu, Fangzhou Hu, Chenchen Tang, Li Ren, Conghui Yang, Rurong Zhao, Min Tao, Chun Zhang, Qinbo Qin…
    Citation: BMC Genomics 2018 19:517
    Content type: Research article Published on:

  42. Cryptosporidium baileyi is the most common Cryptosporidium species in birds. However, effective prevention measures and treatment for C. baileyi infection were still not available. Long non-coding RNAs (lncRNAs) ...

    Authors: Guan-Jing Ren, Xian-Cheng Fan, Ting-Li Liu, Sha-Sha Wang and Guang-Hui Zhao
    Citation: BMC Genomics 2018 19:356
    Content type: Research article Published on:

  43. Japanese cedar (Cryptomeria japonica) is an important tree for Japanese forestry. Male-sterile marker development in Japanese cedar would facilitate selection of male-sterile plus trees, addressing the widespread...

    Authors: Kentaro Mishima, Tomonori Hirao, Miyoko Tsubomura, Miho Tamura, Manabu Kurita, Mine Nose, So Hanaoka, Makoto Takahashi and Atsushi Watanabe
    Citation: BMC Genomics 2018 19:277
    Content type: Research article Published on:

  44. It is unclear whether improving feed efficiency by selection for low residual feed intake (RFI) compromises pigs’ immunocompetence. Here, we aimed at investigating whether pig lines divergently selected for RF...

    Authors: Haibo Liu, Kristina M. Feye, Yet T. Nguyen, Anoosh Rakhshandeh, Crystal L. Loving, Jack C. M. Dekkers, Nicholas K. Gabler and Christopher K. Tuggle
    Citation: BMC Genomics 2019 20:728
    Content type: Research article Published on:

  45. Genetically selected modern broiler chickens have acquired outstanding production efficiency through rapid growth and improved feed efficiency compared to unselected chicken breeds. Recently, we analyzed the t...

    Authors: Bhuwan Khatri, Dongwon Seo, Stephanie Shouse, Jeong Hoon Pan, Nicholas J. Hudson, Jae Kyeom Kim, Walter Bottje and Byungwhi C. Kong
    Citation: BMC Genomics 2018 19:683
    Content type: Research article Published on:

  46. Mycoplasma hominis is a human urogenital pathogen involved in gynaecological, neonatal and extra-genital infections. However, no versatile genetic tools are currently available to study the pathogenicity of this ...

    Authors: S. Pereyre, C. Bénard, C. Brès, C. Le Roy, J. P. Mauxion, F. Rideau, P. Sirand-Pugnet, B. Henrich and C. Bébéar
    Citation: BMC Genomics 2018 19:525
    Content type: Methodology article Published on:

  47. Life in the ocean will increasingly have to contend with a complex matrix of concurrent shifts in environmental properties that impact their physiology and control their life histories. Rhodoliths are corallin...

    Authors: Giselle S. Cavalcanti, Priya Shukla, Megan Morris, Bárbara Ribeiro, Mariah Foley, Michael P. Doane, Cristiane C. Thompson, Matthew S. Edwards, Elizabeth A. Dinsdale and Fabiano L. Thompson
    Citation: BMC Genomics 2018 19:701
    Content type: Research article Published on:

  48. Reconstructing three-dimensional structures of chromosomes is useful for visualizing their shapes in a cell and interpreting their function. In this work, we reconstruct chromosomal structures from Hi-C data b...

    Authors: Badri Adhikari, Tuan Trieu and Jianlin Cheng
    Citation: BMC Genomics 2016 17:886
    Content type: Research article Published on:

  49. With thousands of fungal genomes being sequenced, each genome containing up to 70 secondary metabolite (SM) clusters 30–80 kb in size, breakthrough techniques are needed to characterize this SM wealth.

    Authors: Jin Woo Bok, Rosa Ye, Kenneth D Clevenger, David Mead, Megan Wagner, Amanda Krerowicz, Jessica C Albright, Anthony W Goering, Paul M Thomas, Neil L Kelleher, Nancy P Keller and Chengcang C Wu
    Citation: BMC Genomics 2015 16:343
    Content type: Methodology article Published on:

  50. The oriental armyworm Mythimna separata (Walk) is a serious migratory pest; however, studies on its olfactory response and its underlying molecular mechanism are limited. To gain insights to the olfactory mechani...

    Authors: Yue-qiu He, Bo Feng, Qian-shuang Guo and Yongjun Du
    Citation: BMC Genomics 2017 18:32
    Content type: Research Article Published on:

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BMC Genomics

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