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  1. Isabel Island is a Mexican volcanic island primarily composed of basaltic stones. It features a maar known as Laguna Fragatas, which is classified as a meromictic thalassohaline lake. The constant deposition o...

    Authors: Luis Mario Hernández-Soto, Francisco Martínez-Abarca, Hugo Ramírez-Saad, Marcos López-Pérez and José Félix Aguirre-Garrido
    Citation: BMC Genomics 2023 24:696
    Content type: Research Published on:

  3. Reference genomes provide a foundational framework for evolutionary investigations, ecological analysis, and conservation science, yet uncertainties in the assembly of reference genomes are difficult to assess...

    Authors: Trevor T. Bringloe and Geneviève J. Parent
    Citation: BMC Genomics 2023 24:693
    Content type: Research Published on:

  4. Artemisia annua is the major source for artemisinin production. The artemisinin content in A. annua is affected by different types of light especially the UV light. UVR8, a member of RCC1 gene family was found to...

    Authors: Jieting Chen, Wenguang Wu, Xiaoxia Ding, Danchun Zhang, Chunyan Dai, Hengyu Pan, Peiqi Shi, Chanjuan Wu, Jun Zhang, Jianmin Zhao, Baosheng Liao, Xiaohui Qiu and Zhihai Huang
    Citation: BMC Genomics 2023 24:692
    Content type: Research Published on:

  5. The Hui people are the second-largest ethnic minority in China, and they are distributed throughout the country. A previous study explored the paternal genetic structure of the Hui population in nine different...

    Authors: Dazhi Fu, Atif Adnan, Jun Yao, Noura H. Aldayan, Chuan-Chao Wang and Cao Hongyi
    Citation: BMC Genomics 2023 24:691
    Content type: Research Published on:

  6. As a population genetic tool, mitochondrial DNA is commonly divided into the ~ 1-kb control region (CR), in which single nucleotide variant (SNV) diversity is relatively high, and the coding region, in which s...

    Authors: Emily C. Patterson, Gurdeep Matharu Lall, Rita Neumann, Barbara Ottolini, Chiara Batini, Federico Sacchini, Aiden P. Foster, Jon H. Wetton and Mark A. Jobling
    Citation: BMC Genomics 2023 24:690
    Content type: Research Published on:

  7. The prevalence of Acinetobacter baumannii in nosocomial infections and its remarkable ability to develop antimicrobial resistance have been a critical issue in hospital settings. Here, we examined the genomic fea...

    Authors: Made Rai Dwitya Wiradiputra, Krit Thirapanmethee, Piyatip Khuntayaporn, Pagakrong Wanapaisan and Mullika Traidej Chomnawang
    Citation: BMC Genomics 2023 24:689
    Content type: Research Published on:

  10. Egg laying rate (LR) is associated with a clutch, which is defined as consecutive days of oviposition. The clutch trait can be used as a selection indicator to improve egg production in poultry breeding. Howev...

    Authors: Jie Wang, Zhansheng Liu, Dingguo Cao, Jie Liu, Fuwei Li, Heguo Han, Haixia Han, Qiuxia Lei, Wei Liu, Dapeng Li, Jianxia Wang and Yan Zhou
    Citation: BMC Genomics 2023 24:686
    Content type: Research article Published on:

  12. Aspergillus fumigatus is a major fungal pathogen that causes severe problems due to its increasing resistance to many therapeutic agents. Fludioxonil is a compound that triggers a lethal activation of the fungal-...

    Authors: Sebastian Schruefer, Annica Pschibul, Sarah Sze Wah Wong, Tongta Sae-Ong, Thomas Wolf, Sascha Schäuble, Gianni Panagiotou, Axel A. Brakhage, Vishukumar Aimanianda, Olaf Kniemeyer and Frank Ebel
    Citation: BMC Genomics 2023 24:684
    Content type: Research Published on:

  14. Durum wheat is one of the most important crops, especially in the Mediterranean region. Insight into the genetic diversity of germplasm can improve the breeding program management in various traits. This study...

    Authors: Ehsan Rabieyan, Reza Darvishzadeh, Reza Mohammadi, Alvina Gul, Awais Rasheed, Fatemeh Keykha Akhar, Hossein Abdi and Hadi Alipour
    Citation: BMC Genomics 2023 24:682
    Content type: Research Published on:

  15. Microbial community played an essential role in ecosystem processes, be it mangrove wetland or other intertidal ecologies. Several enzymatic activities like hydrolases are effective ecological indicators of so...

    Authors: Bhramar Dutta, Urmi Halder, Annapurna Chitikineni, Rajeev K. Varshney and Rajib Bandopadhyay
    Citation: BMC Genomics 2023 24:681
    Content type: Research Published on:

  16. In dairy cows, diet is one factor that can affect their milk production and composition. However, the effect of feed restriction on milk miRNome has not yet been described. Indeed, milk is the body fluid with ...

    Authors: A. Leduc, S. Le Guillou, D. Laloë, L. Herve, J. Laubier, P. Poton, Y. Faulconnier, J. Pires, M. Gele, P. Martin, C. Leroux, M. Boutinaud and F. Le Provost
    Citation: BMC Genomics 2023 24:680
    Content type: Research Published on:

  17. The deep-sea snail Phymorhynchus buccinoides belongs to the genus Phymorhynchus (Neogastropoda: Raphitomidae), and it is a dominant specie in the cold seep habitat. As the environment of the cold seep is characte...

    Authors: Zhaoqun Liu, Yuting Huang, Hao Chen, Chang Liu, Minxiao Wang, Chao Bian, Lingling Wang and Linsheng Song
    Citation: BMC Genomics 2023 24:679
    Content type: Research Published on:

  18. High oncogene expression in cancer cells is a major cause of rapid tumor progression and drug resistance. Recent cancer genome research has shown that oncogenes as well as regulatory elements can be amplified ...

    Authors: Hansen Cheng, Wenhao Ma, Kun Wang, Han Chu, Guangchao Bao, Yu Liao, Yawen Yuan, Yixiong Gou, Liting Dong, Jian Yang and Haoyang Cai
    Citation: BMC Genomics 2023 24:678
    Content type: Software Published on:

  19. Macrobrachium amazonicum is a freshwater prawn widely distributed in South America that is undergoing speciation, so the denomination “M. amazonicum complex” is used for it. The mitochondrial cytochrome c oxidase...

    Authors: Jerônimo Costa Marques-Neto, Gabriel Monteiro de Lima, Carlos Murilo Tenório Maciel, Bruna Ramalho Maciel, Fernando Araujo Abrunhosa, Iracilda Sampaio and Cristiana Ramalho Maciel
    Citation: BMC Genomics 2023 24:677
    Content type: Research Published on:

  20. More and more studies show that lncRNA is widely involved in various physiological processes of the organism. However, the functions of the vast majority of them continue to be unknown. In addition, data relat...

    Authors: Lei Deng, Shengli Ren and Jingpu Zhang
    Citation: BMC Genomics 2023 23(Suppl 6):865
    Content type: Research Published on:

    This article is part of a Supplement: Volume 23 Supplement 6

  21. The rapid devolvement of single cell RNA sequencing (scRNA-seq) technology leads to huge amounts of scRNA-seq data, which greatly advance the research of many biomedical fields involving tissue heterogeneity, ...

    Authors: Ruiyi Li, Jihong Guan, Zhiye Wang and Shuigeng Zhou
    Citation: BMC Genomics 2023 23(Suppl 6):864
    Content type: Research Published on:

    This article is part of a Supplement: Volume 23 Supplement 6

  22. Poplar (Populus cathayana)and willow (Salix rehderiana) are important fast-growing trees in China. Grafting plays an important role in improving plant stress resistance and construction of ornamental plants. It i...

    Authors: Le Yang, Yao Chen, Xuejiao Liu, Sheng Zhang and Qingquan Han
    Citation: BMC Genomics 2023 24:676
    Content type: Research Published on:

  23. Epilepsy is a prevalent neurological disorder, and while its precise mechanism remains elusive, a connection to ferroptosis has been established. This study investigates the potential clinical diagnostic signi...

    Authors: Shihao Chen, Xing Jin, Tao He, Mulan Zhang and Huiqin Xu
    Citation: BMC Genomics 2023 24:675
    Content type: Research Published on:

  24. Gene expression profiles have important significance for gene expression characteristics and further functional studies. More attention has been given to the expression databases in humans and mice, but less a...

    Authors: Yuzhe Hu, Dong Xie, Xixi Li, Wenling Han, Yingyu Chen, Huiying Qi and Pingzhang Wang
    Citation: BMC Genomics 2023 24:674
    Content type: Database Published on:

  25. Juglans sigillata L. (walnut) has a high economic value for nuts and wood and has been widely grown and eaten around the world. Light plays an important role in regulating the development of the walnut embryo and...

    Authors: Shengqun Chen, Yingfu Chen, Mei Liang, Shuang Qu, Lianwen Shen, Yajun Zeng and Na Hou
    Citation: BMC Genomics 2023 24:673
    Content type: Research Published on:

  26. Genomic variants of the disease are often discovered nowadays through population-based genome-wide association studies (GWAS). Identifying genomic variations potentially underlying a phenotype, such as hyperte...

    Authors: Md Asad Rahman, Chunhui Cai, Na Bo, Dennis M. McNamara, Ying Ding, Gregory F. Cooper, Xinghua Lu and Jinling Liu
    Citation: BMC Genomics 2023 23(Suppl 5):863
    Content type: Research Published on:

    This article is part of a Supplement: Volume 23 Supplement 5

  27. Sino-Tibetan is the most prominent language family in East Asia. Previous genetic studies mainly focused on the Tibetan and Han Chinese populations. However, due to the sparse sampling, the genetic structure a...

    Authors: Jinwen Chen, Han Zhang, Meiqing Yang, Rui Wang, Hongling Zhang, Zheng Ren, Qiyan Wang, Yubo Liu, Jing Chen, Jingyan Ji, Jing Zhao, Guanglin He, Jianxin Guo, Kongyang Zhu, Xiaomin Yang, Hao Ma…
    Citation: BMC Genomics 2023 24:672
    Content type: Research Published on:

  29. Broodstock nutritional programming improves the offspring utilization of plant-based diets in gilthead sea bream through changes in hepatic metabolism. Attention was initially focused on fatty acid desaturases...

    Authors: F. Naya-Català, A. Belenguer, D. Montero, S. Torrecillas, B. Soriano, J. Calduch-Giner, C. Llorens, R. Fontanillas, S. Sarih, M. J. Zamorano, M. Izquierdo and J. Pérez-Sánchez
    Citation: BMC Genomics 2023 24:670
    Content type: Research Published on:

  31. The Gibberellic Acid-Stimulated Arabidopsis (GASA) gene family is widely involved in the regulation of plant growth, development, and stress response. However, information on the GASA gene family has not been rep...

    Authors: Bingxin Sun, Xianlei Zhao, Jiahui Gao, Jie Li, Yue Xin, Yonghui Zhao, Zhiyong Liu, Hui Feng and Chong Tan
    Citation: BMC Genomics 2023 24:668
    Content type: Research Published on:

  32. The gut microbiota is considered a rich source for potential novel probiotics. Enterococcus genus is a normal component of a healthy gut microbiota, suggesting its vital role. Nosocomial infections caused mainly ...

    Authors: Noha A. Ahmed, Rania Abdelmonem Khattab, Yasser M. Ragab and Mariam Hassan
    Citation: BMC Genomics 2023 24:667
    Content type: Research Published on:

  33. The concept of the functional nutritional value of health-beneficial omega-3 long-chain polyunsaturated fatty acids (n-3 LC-PUFA) is becoming a phenomenon among red meat consumers globally. This study examined...

    Authors: John Roger Otto, Shedrach Benjamin Pewan, Richard Crawford Edmunds, Felista Waithira Mwangi, Robert Tumwesigye Kinobe, Oyelola Abdulwasiu Adegboye and Aduli Enoch Othniel Malau-Aduli
    Citation: BMC Genomics 2023 24:666
    Content type: Research Published on:

  34. Tree peony (Paeonia sect. Moutan DC.) is a famous flower native to China with high ornamental, medicinal, and oil value. However, the low regeneration rate of callus is one of the main constraints for the establi...

    Authors: Wanqing Zhang, Hongxiao Zhang, Guodong Zhao, Na Wang, Lili Guo and Xiaogai Hou
    Citation: BMC Genomics 2023 24:665
    Content type: Research Published on:

  38. Microproteins, prevalent across all kingdoms of life, play a crucial role in cell physiology and human health. Although global gene transcription is widely explored and abundantly available, our understanding ...

    Authors: Bowen Zhao, Jing Zhao, Muyao Wang, Yangfan Guo, Aamir Mehmood, Weibin Wang, Yi Xiong, Shenggan Luo, Dong-Qing Wei, Xin-Qing Zhao and Yanjing Wang
    Citation: BMC Genomics 2023 24:661
    Content type: Database Published on:

  39. Milk production traits are complex traits with vital economic importance in the camel industry. However, the genetic mechanisms regulating milk production traits in camels remain poorly understood. Therefore, ...

    Authors: Huaibing Yao, Zhihua Dou, Zhongkai Zhao, Xiaorui Liang, Haitao Yue, Wanpeng Ma, Zhanqiang Su, Yuzhuo Wang, Zelin Hao, Hui Yan, Zhuangyuan Wu, Liang Wang, Gangliang Chen and Jie Yang
    Citation: BMC Genomics 2023 24:660
    Content type: Research Published on:

  40. As an important vegetable crop, cultivated lettuce is grown worldwide and a great variety of agronomic traits have been preserved within germplasm collections. The mechanisms underlying these phenotypic variat...

    Authors: Zhaowu Zhang, Rob van Treuren, Ting Yang, Yulan Hu, Wenhui Zhou, Huan Liu and Tong Wei
    Citation: BMC Genomics 2023 24:659
    Content type: Research Published on:

  41. Wolfberry is rich in carotenoids, flavonoids, vitamins, alkaloids, betaines and other bioactive ingredients. For over 2,000 years, wolfberry has been used in China as a medicinal and edible plant resource. Nev...

    Authors: Xuexia Liu, Rui Zheng, Yasmina Radani, Han Gao, Sijun Yue, Wenqiang Fan, Jianning Tang, Jing Shi and Jinzhong Zhu
    Citation: BMC Genomics 2023 24:658
    Content type: Research Published on:

  42. Wolbachia is a genus of maternally inherited endosymbionts that can affect reproduction of their hosts and influence metabolic processes. The pollinator, Valisia javana, is common in the male syconium of the dioe...

    Authors: Wanzhen Liu, Xue Xia, Ary A. Hoffmann, Yamei Ding, Ji-Chao Fang and Hui Yu
    Citation: BMC Genomics 2023 24:657
    Content type: Research Published on:

  43. To date genomic studies on Map have concentrated on Type C strains with only a few Type S strains included for comparison. In this study the entire pan-genome of 261 Map genomes (205 Type C, 52 Type S and 4 Ty...

    Authors: Rachel Hodgeman, Rachel Mann, Noel Djitro, Keith Savin, Simone Rochfort and Brendan Rodoni
    Citation: BMC Genomics 2023 24:656
    Content type: Research Published on:

  44. Declining oocyte quality in women with advanced age has been a major impediment to assisted reproductive treatments’ (ART) success rate. However, aging is often accompanied by a diminished ovarian reserve (DOR...

    Authors: Cong Zhang, Shi Song, Ming Yang, Liying Yan and Jie Qiao
    Citation: BMC Genomics 2023 24:655
    Content type: Research Published on:

  46. Authors: Yuuki Kobayashi, Ayane Kayamori, Keita Aoki, Yuh Shiwa, Minenosuke Matsutani, Nobuyuki Fujita, Takashi Sugita, Wataru Iwasaki, Naoto Tanaka and Masako Takashima
    Citation: BMC Genomics 2023 24:653
    Content type: Correction Published on:

    The original article was published in BMC Genomics 2023 24:609

  48. Mapping genetic interactions is essential for determining gene function and defining novel biological pathways. We report a simple to use CRISPR interference (CRISPRi) based platform, compatible with Fluoresce...

    Authors: Alina Guna, Katharine R. Page, Joseph M. Replogle, Theodore K. Esantsi, Maxine L. Wang, Jonathan S. Weissman and Rebecca M. Voorhees
    Citation: BMC Genomics 2023 24:651
    Content type: Research Published on:

  50. Takifugu fasciatus is an aquaculture species with high economic value. In recent years, problems such as environmental pollution and inbreeding have caused a serious decline in T. fasciatus germplasm resources. I...

    Authors: Ying Zhang, Jie Li, Peng Chu, Ruhua Shang, Shaowu Yin and Tao Wang
    Citation: BMC Genomics 2023 24:645
    Content type: Research Published on:

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BMC Genomics

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