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  1. The Kazakhs are one of the biggest Turkic-speaking ethnic groups, controlling vast swaths of land from the Altai to the Caspian Sea. In terms of area, Kazakhstan is ranked ninth in the world. Northern, Eastern...

    Authors: Yeldar Ashirbekov, Madina Seidualy, Arman Abaildayev, Albina Maxutova, Aigul Zhunussova, Ainur Akilzhanova, Kamalidin Sharipov, Zhaxylyk Sabitov and Maxat Zhabagin
    Citation: BMC Genomics 2023 24:649
  2. The Begonia species are common shade plants that are mostly found in southwest China. They have not been well studied despite their medicinal and decorative uses because gene penetration, decreased adaptability, ...

    Authors: Chao Xiong, Yang Huang, Zhenglong Li, Lan Wu, Zhiguo Liu, Wenjun Zhu, Jianhui Li, Ran Xu and Xin Hong
    Citation: BMC Genomics 2023 24:648
  3. Feed efficiency is a research priority to support a sustainable meat production. It is recognized as a complex trait that integrates multiple biological pathways orchestrated in and by various tissues. This st...

    Authors: Camille Juigné, Emmanuelle Becker and Florence Gondret
    Citation: BMC Genomics 2023 24:647
  4. The mammalian oviduct is a complex, fibromuscular organ known for its role in orchestrating a series of timely and dynamic changes to suitably support early embryogenesis. Climate change-induced heat stress (H...

    Authors: Nico G. Menjivar, Ahmed Gad, Riley E. Thompson, Mindy A. Meyers, Fiona K. Hollinshead and Dawit Tesfaye
    Citation: BMC Genomics 2023 24:646
  5. Understanding changes in cell identity in cancer and ageing is of great importance. In this work, we analyzed how gene expression changes in human tissues are associated with tissue specificity during cancer a...

    Authors: Gabriel Arantes dos Santos, Kasit Chatsirisupachai, Roberto A. Avelar and João Pedro de Magalhães
    Citation: BMC Genomics 2023 24:644
  6. Long non-coding RNAs (lncRNAs) play critical roles in various biological processes in plants. Extensive studies utilizing high-throughput RNA sequencing have revealed that many lncRNAs are involved in plant di...

    Authors: Minghua Li, Wei Li, Meixia Zhao, Zhiqiang Li, Guo-Liang Wang, Wende Liu and Chun Liang
    Citation: BMC Genomics 2023 24:643
  7. Barley (Hordeum vulgare) is one of the most popular cereal crops globally. Although it is a diploid species, (2n = 2x = 14) the study of its genome organization is necessary in the framework of plant breeding sin...

    Authors: I. M. Serrano-León, P. Prieto and M. Aguilar
    Citation: BMC Genomics 2023 24:642

    The Correction to this article has been published in BMC Genomics 2023 24:694

  8. MicroRNAs (miRNAs) are important post-transcriptional gene regulators controlling cellular lineage specification and differentiation during embryonic development, including the gastrointestinal system. However...

    Authors: Yu-Han Hung, Meghan Capeling, Jonathan W. Villanueva, Matt Kanke, Michael T. Shanahan, Sha Huang, Rebecca Cubitt, Vera D. Rinaldi, John C. Schimenti, Jason R. Spence and Praveen Sethupathy
    Citation: BMC Genomics 2023 24:641
  9. The study was conducted to find out the candidate microRNA (miRNA) and genes that associated with sperm motility of Yili goose through small RNA sequencing of testicular tissue of Yili goose, and provide a the...

    Authors: Yingping Wu, Lihua Zhang, Haiying Li, Xiaoyu Zhao, Yawen Ding, Yingying Yao and Ling Wang
    Citation: BMC Genomics 2023 24:640
  10. Microbes live within complex communities of interacting populations, either free-living in waters and soils or symbionts of animals and plants. Their interactions include the production of antimicrobial peptid...

    Authors: Claudia Teso-Pérez, Manuel Martínez-Bueno, Juan Manuel Peralta Sánchez, Eva Valdivia, María Esther Fárez-Vidal and Antonio Manuel Martín-Platero
    Citation: BMC Genomics 2023 24:639
  11. Although it is known that variation in the aldehyde dehydrogenase 2 (ALDH2) gene family influences the East Asian alcohol flushing response, knowledge about other genetic variants that affect flushing symptoms is...

    Authors: Yoonsu Cho, Kuang Lin, Su-Hyun Lee, Canqing Yu, Dan Schmidt Valle, Daniel Avery, Jun Lv, Keumji Jung, Liming Li, George Davey Smith, China Kadoorie Biobank Collaborative Group, Dianjianyi Sun, Zhengming Chen, Iona Y. Millwood, Gibran Hemani and Robin G. Walters
    Citation: BMC Genomics 2023 24:638
  12. Polyadenylation is a crucial process that terminates mRNA molecules at their 3′-ends. It has been observed that alternative polyadenylation (APA) can generate multiple transcripts from a single gene locus, eac...

    Authors: Zhenying Peng, Shuang Yu, Jingjing Meng, Kai-Hua Jia, Jialei Zhang, Xinguo Li, Wenwei Gao and Shubo Wan
    Citation: BMC Genomics 2023 24:637
  13. Insects are an important reservoir of viral biodiversity, but the vast majority of viruses associated with insects have not been discovered. Recent studies have employed high-throughput RNA sequencing, which h...

    Authors: Paula Rozo-Lopez, William Brewer, Simon Käfer, McKayla M. Martin and Benjamin J. Parker
    Citation: BMC Genomics 2023 24:636
  14. With the promotion of “One Health,” the health of animals and their impact on the environment have become major concerns recently. Widely distributed in China, the whooper swans (Cygnus cygnus) and black swans (C...

    Authors: Yin Fu, Kaihui Zhang, Fa Shan, Junqiang Li, Yilin Wang, Xiaoying Li, Huiyan Xu, Ziyang Qin and Longxian Zhang
    Citation: BMC Genomics 2023 24:635
  15. Exploring evolution regularities of genome sequences and constructing more objective species evolution relationships at the genomic level are high-profile topics. Based on the evolution mechanism of genome seq...

    Authors: Xiaolong Li, Hong Li, Zhenhua Yang, Yuan Wu and Mengchuan Zhang
    Citation: BMC Genomics 2023 24:634
  16. Nitrate is a primary nitrogen source for plant growth, and previous studies have indicated a correlation between nitrogen and browning. Nitrate transporters (NRTs) are crucial in nitrate allocation. Here, we util...

    Authors: Jin Feng, Can Zhu, Jiaqi Cao, Chen Liu, Jiaqi Zhang, Fuliang Cao and Xiaohong Zhou
    Citation: BMC Genomics 2023 24:633
  17. Tan and Hu sheep are well-known local breeds in China, producing lamb fur with unique ornamental and practical values highly appreciated by consumers worldwide. Fur quality is optimal at one month of age and g...

    Authors: Letian Zhang, Jiankui Wang, Ganxian Cai, Lina Ma, Zhengwei Zhao, Qing Ma and Xuemei Deng
    Citation: BMC Genomics 2023 24:632
  18. Host genetics influences the development of infectious diseases in many agricultural animal species. Identifying genes associated with disease development has the potential to make selective breeding for disea...

    Authors: Konstantin Divilov, Noah Merz, Blaine Schoolfield, Timothy J. Green and Chris Langdon
    Citation: BMC Genomics 2023 24:631
  19. Background Puccinia arachidis fungus causes rust disease in the peanut plants (Arachis hypogaea L.), which leads to high yield loss. Metabolomic profiling of Arachis hypogaea was performed to identify the pathoge...

    Authors: Visha Rathod, Khyati Rathod, Rukam S. Tomar, Ritisha Tatamiya, Rasmieh Hamid, Feba Jacob and Nasreen Shakil Munshi
    Citation: BMC Genomics 2023 24:630
  20. Auxin is an important hormone in plants and the PIN-FORMED (PIN) genes are essential to auxin distribution in growth and developmental processes of plants. Peanut is an influential cash crop, but research into PI...

    Authors: Jianxin Bian, Yuanyuan Cui, Jihua Li, Yu Guan, Shuhua Tian and Xiaoqin Liu
    Citation: BMC Genomics 2023 24:629
  21. The survival and fertility of heifers are critical factors for the success of dairy farms. The mortality of heifers poses a significant challenge to the management and profitability of the dairy industry. In d...

    Authors: Yahui Gao, Alexis Marceau, Victoria Iqbal, Jose Antonio Torres-Vázquez, Mahesh Neupane, Jicai Jiang, George E. Liu and Li Ma
    Citation: BMC Genomics 2023 24:628
  22. Phytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disea...

    Authors: Gang Lei, Kun-Hua Zhou, Xue-Jun Chen, Yue-Qin Huang, Xin-Jie Yuan, Ge-Ge Li, Yuan-Yuan Xie and Rong Fang
    Citation: BMC Genomics 2023 24:626
  23. Anaerobic parasitic ciliates are a specialized group of ciliates that are adapted to anoxic and oxygen-depleted habitats. Among them, Balantidium polyvacuolum, which inhabits the hindgut of Xenocyprinae fishes, h...

    Authors: Xia-lian Bu, Wei-shan Zhao, Zhong-yang Li, Hong-wei Ma, Yu-shun Chen, Wen-xiang Li, Hong Zou, Ming Li and Gui-tang Wang
    Citation: BMC Genomics 2023 24:624
  24. Establishment of DNA methylation (DNAme) patterns is essential for balanced multi-lineage cellular differentiation, but exactly how these patterns drive cellular phenotypes is unclear. While > 80% of CpG sites...

    Authors: Timothy J. Scott, Tyler J. Hansen, Evonne McArthur and Emily Hodges
    Citation: BMC Genomics 2023 24:623
  25. Exploring Brevibacterium strains from various ecosystems may lead to the discovery of new antibiotic-producing strains. Brevibacterium sp. H-BE7, a strain isolated from marine sediments from Northern Patagonia, C...

    Authors: Andrés Cumsille, Néstor Serna-Cardona, Valentina González, Fernanda Claverías, Agustina Undabarrena, Vania Molina, Francisco Salvà-Serra, Edward R.B. Moore and Beatriz Cámara
    Citation: BMC Genomics 2023 24:622
  26. Puberty marks the end of childhood and achieve sexual maturation and fertility. The role of hypothalamic proteins in regulating puberty onset is unclear. We performed a comprehensive differential proteomics an...

    Authors: Jing Ye, Xu Yan, Wei Zhang, Juntai Lu, Shuangshuang Xu, Xiaoqian Li, Ping Qin, Xinbao Gong, Ya Liu, Yinghui Ling, Yunsheng Li, Yunhai Zhang and Fugui Fang
    Citation: BMC Genomics 2023 24:621
  27. Plants respond to stress through highly tuned regulatory networks. While prior works identified master regulators of iron deficiency responses in A. thaliana from whole-root data, identifying regulators that a...

    Authors: Selene R. Schmittling, DurreShahwar Muhammad, Samiul Haque, Terri A. Long and Cranos M. Williams
    Citation: BMC Genomics 2023 24:620
  28. To explore the potential network markers and related signaling pathways of human B cells infected by COVID-19, we performed standardized integration and analysis of single-cell sequencing data to construct con...

    Authors: Ying Li, Liqin Han, Peiluan Li, Jing Ge, Yun Xue and Luonan Chen
    Citation: BMC Genomics 2023 24:619
  29. Extravillous trophoblast cell (EVT) differentiation and its communication with maternal decidua especially the leading immune cell type natural killer (NK) cell are critical events for placentation. However, a...

    Authors: Bai-Mei Zhuang, Dan-Dan Cao, Tian-Xi Li, Xiao-Feng Liu, Min-Min Lyu, Si-Dong Wang, Xin-Yuan Cui, Li Wang, Xiao-Lin Chen, Xiao-Li Lin, Cheuk-Lun Lee, Philip C.N. Chiu, William S.B. Yeung and Yuan-Qing Yao
    Citation: BMC Genomics 2023 24:618
  30. Oculomotor nerve palsy (ONP) is a neuroparalytic disorder resulting in dysfunction of innervating extraocular muscles (EOMs), of which the pathological characteristics remain underexplored.

    Authors: Mingsu Shi, Yanxi Fang, Yu Liang, Yuxiang Hu, Jiaqiu Huang, Weiyi Xia, Hewei Bian, Qiao Zhuo, Lianqun Wu and Chen Zhao
    Citation: BMC Genomics 2023 24:617
  31. Elucidating genome-wide structural variants including copy number variations (CNVs) have gained increased significance in recent times owing to their contribution to genetic diversity and association with impo...

    Authors: Sheikh Firdous Ahmad, Celus Chandrababu Shailaja, Sakshi Vaishnav, Amit Kumar, Gyanendra Kumar Gaur, Sarath Chandra Janga, Syed Mudasir Ahmad, Waseem Akram Malla and Triveni Dutt
    Citation: BMC Genomics 2023 24:616
  32. Understanding the microflora inhabiting the reproductive tract is important for a better understanding of female physiology and reproductive health. The endometrial fluid from mice in three reproductive stages...

    Authors: Sisi Pu, Meng Wang, Jinglei Wang, Qian Zhang, Xin Ma, Rui Wang, Sijiu Yu, Libin Wang and Yangyang Pan
    Citation: BMC Genomics 2023 24:615
  33. Chromosomal compartmentalization plays a critical role in maintaining proper transcriptional programs in cell differentiation and oncogenesis. However, currently the prevalent method for comparative analysis o...

    Authors: Yan Kai, Nan Liu, Stuart H. Orkin and Guo-Cheng Yuan
    Citation: BMC Genomics 2023 24:614
  34. The domestic dog, Canis lupus familiaris, is a companion animal for humans as well as an animal model in cancer research due to similar spontaneous occurrence of cancers as humans. Despite the social and biologic...

    Authors: In Seok Yang, Insu Jang, Jin Ok Yang, Jinhyuk Choi, Min-Seo Kim, Ka-Kyung Kim, Byung-Joon Seung, Jae-Ho Cheong, Jung-Hyang Sur, Hojung Nam, Byungwook Lee, Junho Kim and Sangwoo Kim
    Citation: BMC Genomics 2023 24:613
  35. The hepatopancreas of crustaceans serves as a significant organ for both the synthesis and secretion of digestive enzymes, as well as energy storage. In the event of food shortage, the hepatopancreas can provi...

    Authors: Hongli Liu, Yang Feng, Ma Yang, Ya Huang, Minghao Li, Yi Geng, Ping Ouyang, Defang Chen, Shiyong Yang, Lizi Yin, Liangyu Li and Xiaoli Huang
    Citation: BMC Genomics 2023 24:612
  36. Uniparental-inherited haploid genetic marker of Y­chromosome single nucleotide polymorphisms (Y-SNP) have the power to provide a deep understanding of the human evolutionary past, forensic pedigree, and bio-ge...

    Authors: Guang-Bin Zhao, Lei Miao, Mengge Wang, Jia-Hui Yuan, Lan-Hai Wei, Yao-Sen Feng, Jie Zhao, Ke-Lai Kang, Chi Zhang, An-Quan Ji, Guanglin He and Le Wang
    Citation: BMC Genomics 2023 24:611
  37. Vancomycin-resistant enterococci (VRE) are among the most common causative pathogens for nosocomial infections worldwide. Moreover, strains of VRE have been isolated from several domestic livestock in Egypt.

    Authors: Khaled A. Abd El-Razik, Eman S. Ibrahim, Amany A. Arafa, Riham H. Hedia, Abdelgayed M. Younes and Mahmoud H. Hasanain
    Citation: BMC Genomics 2023 24:610
  38. Since DNA information was first used in taxonomy, barcode sequences such as the internal transcribed spacer (ITS) region have greatly aided fungal identification; however, a barcode sequence alone is often ins...

    Authors: Yuuki Kobayashi, Ayane Kayamori, Keita Aoki, Yuh Shiwa, Minenosuke Matsutani, Nobuyuki Fujita, Takashi Sugita, Wataru Iwasaki, Naoto Tanaka and Masako Takashima
    Citation: BMC Genomics 2023 24:609

    The Correction to this article has been published in BMC Genomics 2023 24:653

  39. The presence of Aggregated Lymphoid Nodules Area (ALNA) is a notable anatomical characteristic observed in the abomasum of Bactrian camels. This area is comprised of two separate regions, namely the Reticular ...

    Authors: Yujiao Cheng, Yan Ren, Wenhui Wang and Wangdong Zhang
    Citation: BMC Genomics 2023 24:608
  40. Schisandra sphenanthera is an extremely important medicinal plant, and its main medicinal component is bioactive lignans. The S. sphenanthera fruit is preferred by the majority of consumers, and the root, stem, a...

    Authors: Boshi Sun, Peng Wang, Meng Guan, Entong Jia, Qian Li, Jun Li, Ziyun Zhou and Pengda Ma
    Citation: BMC Genomics 2023 24:607
  41. Plasmodium vivax is the second most important cause of human malaria worldwide, and accounts for the majority of malaria cases in South America. A high-quality reference genome exists for Papua Indonesia (PvP01) ...

    Authors: Katlijn De Meulenaere, Bart Cuypers, Dionicia Gamboa, Kris Laukens and Anna Rosanas-Urgell
    Citation: BMC Genomics 2023 24:606
  42. Genome-wide association studies (GWAS) have identified host genetic variants associated with paratuberculosis (PTB) susceptibility. Most of the GWAS-identified SNPs are in non-coding regions. Connecting these ...

    Authors: Gerard Badia-Bringué, Maria Canive, Nora Fernandez-Jimenez, José Luis Lavín, Rosa Casais, Cristina Blanco-Vázquez, Patricia Vázquez, Almudena Fernández, Jose Ramón Bilbao, Joseba M. Garrido, Ramón A. Juste, Oscar González-Recio and Marta Alonso-Hearn
    Citation: BMC Genomics 2023 24:605
  43. Cashmere has long been used as the raw material for wool textiles. The diameter of the cashmere fibre determines its quality and economic value. However, the regulatory role of noncoding RNAs (ncRNAs) in cashm...

    Authors: Cuiling Wu, Qin Xu, Jianying Li, Chongkai Qin, Hanikezi Tulafu, Wenna Liu, Qingwei Lu, Wenxin Zheng and Xuefeng Fu
    Citation: BMC Genomics 2023 24:604
  44. Zinc finger-homeodomain (ZHD) proteins are mostly expressed in plants and are involved in proper growth and development and minimizing biotic and abiotic stress. A recent study identified and characterized the...

    Authors: Md. Abir Ul Islam, Juthy Abedin Nupur, Muhammad Shafiq, Qurban Ali, Adnan Sami and Muhammad Adnan Shahid
    Citation: BMC Genomics 2023 24:603
  45. Ajania Poljakov, an Asteraceae family member, grows mostly in Asia’s arid and semi-desert areas and is a significant commercial and decorative plant. Nevertheless, the genus’ classification has been disputed, and...

    Authors: Jingya Yu, Yun Han, Hao Xu, Shuang Han, Xiaoping Li, Yu Niu, Shilong Chen and Faqi Zhang
    Citation: BMC Genomics 2023 24:602
  46. Deep-intronic variants that alter RNA splicing were ineffectively evaluated in the search for the cause of genetic diseases. Determination of such pathogenic variants from a vast number of deep-intronic varian...

    Authors: Ryo Kurosawa, Kei Iida, Masahiko Ajiro, Tomonari Awaya, Mamiko Yamada, Kenjiro Kosaki and Masatoshi Hagiwara
    Citation: BMC Genomics 2023 24:601
  47. MicroRNAs (miRNAs) play an important regulatory role in mammalian reproduction. Currently, most studies are primarily concentrated on ovarian miRNAs, ignoring the influence of endometrial miRNAs on the fecundi...

    Authors: Jihong Dong, Xuecheng Jiang, Nan Liu, Hegang Li, Jinshan Zhao, Jianning He and Xiaoxiao Gao
    Citation: BMC Genomics 2023 24:600
  48. Conus, a highly diverse species of venomous predators, has attracted significant attention in neuroscience and new drug development due to their rich collection of neuroactive peptides called conotoxins. Recent a...

    Authors: Jian-Wei Zheng, Yang Lu, Yu-Feng Yang, Dan Huang, Da-Wei Li, Xiang Wang, Yang Gao, Wei-Dong Yang, Yuanfang Guan and Hong-Ye Li
    Citation: BMC Genomics 2023 24:598

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