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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. DNA binding with one finger (Dof) transcription factors play important roles in plant growth and abiotic stress responses. Although genome-wide identification and analysis of the DOF transcription factor famil...

    Authors: Yue Liu, Nannan Liu, Xiong Deng, Dongmiao Liu, Mengfei Li, Dada Cui, Yingkao Hu and Yueming Yan
    Citation: BMC Genomics 2020 21:276
    Content type: Research article Published on:

  2. Transcription factors (TFs) are essential regulators of growth and development in eukaryotes. Basic-helix-loop-helix (bHLHs) is one of the most significant TFs families involved in several critical regulatory ...

    Authors: Mohammad Aslam, Bello Hassan Jakada, Beenish Fakher, Joseph G. Greaves, Xiaoping Niu, Zhenxia Su, Yan Cheng, Shijiang Cao, Xiaomei Wang and Yuan Qin
    Citation: BMC Genomics 2020 21:735
    Content type: Research article Published on:

  3. The C. elegans Promoterome is a powerful resource for revealing the regulatory mechanisms by which transcription is controlled pan-genomically. Transcription factors will form the core of any systems biology mode...

    Authors: John S Reece-Hoyes, Jane Shingles, Denis Dupuy, Christian A Grove, Albertha JM Walhout, Marc Vidal and Ian A Hope
    Citation: BMC Genomics 2007 8:27
    Content type: Research article Published on:

  4. Super-enhancers (SEs), which activate genes involved in cell-type specificity, have mainly been defined as genomic regions with top-ranked enrichment(s) of histone H3 with acetylated K27 (H3K27ac) and/or trans...

    Authors: Nando D. Das, Jen-Chien Chang, Chung-Chau Hon, S. Thomas Kelly, Shinsuke Ito, Marina Lizio, Bogumil Kaczkowski, Hisami Watanabe, Keisuke Katsushima, Atsushi Natsume, Haruhiko Koseki, Yutaka Kondo, Aki Minoda and Takashi Umehara
    Citation: BMC Genomics 2023 24:574
    Content type: Research Published on:

  5. Development of arbuscular mycorrhiza (AM) requires a fundamental reprogramming of root cells for symbiosis. This involves the induction of hundreds of genes in the host. A recently identified GRAS-type transcr...

    Authors: Mélanie K. Rich, Pierre-Emmanuel Courty, Christophe Roux and Didier Reinhardt
    Citation: BMC Genomics 2017 18:589
    Content type: Research article Published on:

  6. Transcription factor (TF)-DNA binding loci are explored by analyzing massive datasets generated with application of Chromatin Immuno-Precipitation (ChIP)-based high-throughput sequencing technologies. These da...

    Authors: Vladimir A Kuznetsov, Onkar Singh and Piroon Jenjaroenpun
    Citation: BMC Genomics 2010 11(Suppl 1):S12
    Content type: Research Published on:

    This article is part of a Supplement: Volume 11 Supplement 1

  7. Transcription factors are essential regulators of gene expression and play critical roles in development, differentiation, and in many cancers. To carry out their regulatory programs, they must cooperate in ne...

    Authors: Zachary B. Abrams, Mark Zucker, Min Wang, Amir Asiaee Taheri, Lynne V. Abruzzo and Kevin R. Coombes
    Citation: BMC Genomics 2018 19:738
    Content type: Research article Published on:

  8. Plant stress responses and mechanisms determining tolerance are controlled by diverse sets of genes. Transcription factors (TFs) have been implicated in conferring drought tolerance under drought stress condit...

    Authors: Pil Joong Chung, Harin Jung, Yang Do Choi and Ju-Kon Kim
    Citation: BMC Genomics 2018 19:40
    Content type: Research article Published on:

  9. The transcription factor Pax8 is essential for the differentiation of thyroid cells. However, there are few data on genes transcriptionally regulated by Pax8 other than thyroid-related genes. To better underst...

    Authors: Sergio Ruiz-Llorente, Enrique Carrillo Santa de Pau, Ana Sastre-Perona, Cristina Montero-Conde, Gonzalo Gómez-López, James A Fagin, Alfonso Valencia, David G Pisano and Pilar Santisteban
    Citation: BMC Genomics 2012 13:147
    Content type: Research article Published on:

  10. Multiple transcription factors (TFs) are involved in the generation of gene expression patterns, such as tissue-specific gene expression and pleiotropic immune responses. However, how combinations of TFs orche...

    Authors: Alexis Vandenbon, Yutaro Kumagai, Shizuo Akira and Daron M Standley
    Citation: BMC Genomics 2012 13(Suppl 7):S11
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 13 Supplement 7

  11. Heart development is a relatively fragile process in which many transcription factor genes show dose-sensitive characteristics such as haploinsufficiency and lower penetrance. Despite efforts to unravel the ge...

    Authors: Yutaro Hori, Yoko Tanimoto, Satoru Takahashi, Tetsushi Furukawa, Kazuko Koshiba-Takeuchi and Jun K. Takeuchi
    Citation: BMC Genomics 2018 19:967
    Content type: Research article Published on:

  12. Rice (Oryza sativa L.) is a food crop for humans worldwide. However, temperature has an effect during the vegetative and reproductive stages. In high-latitude regions where rice is cultivated, cold stress is a ma...

    Authors: Jia Liu, Qinglin Meng, Hongtao Xiang, Fengmei Shi, Ligong Ma, Yichu Li, Chunlai Liu, Yu Liu and Baohua Su
    Citation: BMC Genomics 2021 22:800
    Content type: Research article Published on:

  13. APETALA2/ETHYLENE RESPONSIVE FACTOR (AP2/ERF) transcription factors play essential roles in plant growth, development, metabolism, and responses to biotic and abiotic stresses. However, few studies concerning AP2...

    Authors: Peiting Li, Zhe Chai, Pingping Lin, Chaohua Huang, Guoqiang Huang, Liangnian Xu, Zuhu Deng, Muqing Zhang, Yu Zhang and Xinwang Zhao
    Citation: BMC Genomics 2020 21:685
    Content type: Research article Published on:

  14. Cabbage (Brassica oleracea) is one of the most important leaf vegetables grown worldwide. The entire cabbage genome sequence and more than fifty thousand proteins have been obtained to date. However a high degree...

    Authors: Senthil Kumar Thamilarasan, Jong-In Park, Hee-Jeong Jung and Ill-Sup Nou
    Citation: BMC Genomics 2014 15:422
    Content type: Research article Published on:

  15. Chromosomal architecture, which is constituted by chromatin loops, plays an important role in cellular functions. Gene expression and cell identity can be regulated by the chromatin loop, which is formed by pr...

    Authors: Ruimin Wang, Yunlong Wang, Xueying Zhang, Yaliang Zhang, Xiaoyong Du, Yaping Fang and Guoliang Li
    Citation: BMC Genomics 2019 20(Suppl 3):296
    Content type: Research Published on:

    This article is part of a Supplement: Volume 20 Supplement 3

  16. Gene expression studies on non-model organisms require open-end strategies for transcription profiling. Gel-based analysis of cDNA fragments allows to detect alterations in gene expression for genes which have...

    Authors: Balakrishnan Venkatesh, Ursula Hettwer, Birger Koopmann and Petr Karlovsky
    Citation: BMC Genomics 2005 6:51
    Content type: Methodology article Published on:

  17. Antigenic stimulation through cross-linking the IgE receptor and epithelial cell-derived cytokine IL-33 are potent stimuli of mast cell (MC) activation. Moreover, IL-33 primes a variety of cell types, includin...

    Authors: Junfeng Gao, Yapeng Li, Xiaoyu Guan, Zahraa Mohammed, Gregorio Gomez, Yvonne Hui, Dianzheng Zhao, Carole A. Oskeritzian and Hua Huang
    Citation: BMC Genomics 2023 24:592
    Content type: Research Published on:

  18. In recent years, much attention has been given to AP2/ERF transcription factors because they play indispensable roles in many biological processes, such as plant development and biotic and abiotic stress response...

    Authors: Shutao He, Xiaomeng Hao, Shuli He, Xiaoge Hao, Peng Zhang and Xiaonan Chen
    Citation: BMC Genomics 2021 22:748
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2022 23:139

  19. Microarray analysis still is a powerful tool to identify new components of the transcriptosome. It helps to increase the knowledge of targets triggered by stress conditions such as hypoxia and nitric oxide. Ho...

    Authors: Emeka I Igwe, Silke Essler, Natalie Al-Furoukh, Nathalie Dehne and Bernhard Brüne
    Citation: BMC Genomics 2009 10:408
    Content type: Research article Published on:

  20. The hop plant (Humulus lupulus L.) is a valuable source of several secondary metabolites, such as flavonoids, bitter acids, and essential oils. These compounds are widely implicated in the beer brewing industry a...

    Authors: Ajay Kumar Mishra, Ganesh Selvaraj Duraisamy, Mudra Khare, Tomáš Kocábek, Jernej Jakse, Jindřich Bříza, Josef Patzak, Teruo Sano and Jaroslav Matoušek
    Citation: BMC Genomics 2018 19:739
    Content type: Research article Published on:

  21. Most living organisms use sunlight as a source of energy and/or information about their environment. Consequently, they have developed mechanisms to sense light quality and quantity. In the fungus Trichoderma atr...

    Authors: José E. Cetz-Chel, Edgar Balcázar-López, Edgardo U. Esquivel-Naranjo and Alfredo Herrera-Estrella
    Citation: BMC Genomics 2016 17:327
    Content type: Research article Published on:

  23. Increases in ocean temperatures and in the frequency and severity of hypoxic events are expected with climate change, and may become a challenge for cultured Atlantic salmon and negatively affect their growth,...

    Authors: Anne Beemelmanns, Fábio S. Zanuzzo, Xi Xue, Rebeccah M. Sandrelli, Matthew L. Rise and A. Kurt Gamperl
    Citation: BMC Genomics 2021 22:261
    Content type: Research article Published on:

  24. Dof transcription factors (TFs) containing C2-C2 zinc finger domains are plant-specific regulatory proteins, playing crucial roles in a variety of biological processes. However, little is known about Dof in Camel...

    Authors: Tao Luo, Yanan Song, Huiling Gao, Meng Wang, Hongli Cui, Chunli Ji, Jiping Wang, Lixia Yuan and Runzhi Li
    Citation: BMC Genomics 2022 23:812
    Content type: Research Published on:

  25. The Engrailed Homology 1 (EH1) motif is a small region, believed to have evolved convergently in homeobox and forkhead containing proteins, that interacts with the Drosophila protein groucho (C. elegans unc-37, H...

    Authors: Richard R Copley
    Citation: BMC Genomics 2005 6:169
    Content type: Research article Published on:

  26. Panax ginseng is a well-known medicinal plant worldwide. As an herbal medicine, ginseng is also known for its long lifecycle, which can reach several decades. WRKY proteins play regulatory roles in many aspects o...

    Authors: Peng Di, Ping Wang, Min Yan, Peng Han, Xinyi Huang, Le Yin, Yan Yan, Yonghua Xu and Yingping Wang
    Citation: BMC Genomics 2021 22:834
    Content type: Research article Published on:

  27. Alternative transcription start site (TSS) usage plays important roles in transcriptional control of mammalian gene expression. The growing interest in alternative TSSs and their role in genome diversification...

    Authors: Peter Zhang, Emmanuel Dimont, Thomas Ha, Douglas J. Swanson, Winston Hide and Dan Goldowitz
    Citation: BMC Genomics 2017 18:461
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2018 19:39

  28. The formation of the pre-initiation complex in eukaryotic genes is a key step in transcription initiation. The TATA-binding protein (TBP) is a universal component of all pre-initiation complexes for all kinds ...

    Authors: Natalia Gómez-Navarro, Antonio Jordán-Pla, Francisco Estruch and José E. Pérez-Ortín
    Citation: BMC Genomics 2016 17:183
    Content type: Research article Published on:

  29. Orchardgrass (Dactylis glomerata L.) is one of the most important cool-season perennial forage grasses that is widely cultivated in the world and is highly tolerant to stressful conditions. However, little is kno...

    Authors: Zhongfu Yang, Gang Nie, Guangyan Feng, Jiating Han, Linkai Huang and Xinquan Zhang
    Citation: BMC Genomics 2021 22:178
    Content type: Research article Published on:

  30. Transcription factors (TFs) regulate gene expression by interacting with promoters of their target genes and are classified into families based on their DNA-binding domains. Genes coding for TFs have been iden...

    Authors: Isabelle Romeuf, Dominique Tessier, Mireille Dardevet, Gérard Branlard, Gilles Charmet and Catherine Ravel
    Citation: BMC Genomics 2010 11:185
    Content type: Database Published on:

  31. The plant-specific TCP transcription factors play different functions in multiple processes of plant growth and development. TCP family genes have been identified in several plant species, but no comprehensive...

    Authors: Xiangpeng Leng, Hongru Wei, Xiaozhao Xu, Sandip A. Ghuge, Dongjie Jia, Gengsen Liu, Yongzhang Wang and Yongbing Yuan
    Citation: BMC Genomics 2019 20:786
    Content type: Research article Published on:

  32. In post-genomic era, the study of transcriptional regulation is pivotal to decode genetic information. Transcription factors (TFs) are central proteins for transcriptional regulation, and interactions between ...

    Authors: Guangyong Zheng, Qi Liu, Guohui Ding, Chaochun Wei and Yixue Li
    Citation: BMC Genomics 2012 13:388
    Content type: Research article Published on:

  33. Ectomycorrhizal (ECM) fungi develop a mutualistic symbiotic interaction with the roots of their host plants. During this process, they undergo a series of developmental transitions from the running hyphae in t...

    Authors: Y. Daguerre, E. Levati, J. Ruytinx, E. Tisserant, E. Morin, A. Kohler, B. Montanini, S. Ottonello, A. Brun, C. Veneault-Fourrey and F. Martin
    Citation: BMC Genomics 2017 18:737
    Content type: Research article Published on:

  34. Plant basic leucine zipper (bZIP) transcription factors are one of the largest and most diverse gene families and play key roles in regulating diverse stress processes. Brachypodium distachyon is emerging as a wi...

    Authors: Xiang Liu and Zhaoqing Chu
    Citation: BMC Genomics 2015 16:227
    Content type: Research article Published on:

  35. Basic leucine zipper (bZIP) protein is a plant-specific transcription factor involved in various biological processes, including light signaling, seed maturation, flower development, cell elongation, seed accumul...

    Authors: Xiaozong Wu, Changhe Cheng, Rui Ma, Jianbo Xu, Congcong Ma, Yutao Zhu and Yanyan Ren
    Citation: BMC Genomics 2023 24:705
    Content type: Research Published on:

  36. Microarray technologies are widely used to quantify the abundance of transcripts corresponding to thousands of genes. To maximise the robustness of transcriptome results, we have tested the performance and rep...

    Authors: Steven P Wilder, Pamela J Kaisaki, Karène Argoud, Anita Salhan, Jiannis Ragoussis, Marie-Thérèse Bihoreau and Dominique Gauguier
    Citation: BMC Genomics 2009 10:63
    Content type: Methodology article Published on:

  37. Artemisinin resistance in Plasmodium falciparum malaria has emerged in Western Cambodia. This is a major threat to global plans to control and eliminate malaria as the artemisinins are a key component of antimala...

    Authors: Sachel Mok, Mallika Imwong, Margaret J Mackinnon, Joan Sim, Ramya Ramadoss, Poravuth Yi, Mayfong Mayxay, Kesinee Chotivanich, Kek-Yee Liong, Bruce Russell, Duong Socheat, Paul N Newton, Nicholas PJ Day, Nicholas J White, Peter R Preiser, François Nosten…
    Citation: BMC Genomics 2011 12:391
    Content type: Research article Published on:

  38. Gene regulatory processes are largely resulting from binding of transcription factors to specific genomic targets. Leucine-responsive Regulatory Protein (Lrp) is a prevalent transcription factor family in prok...

    Authors: Trong Nguyen-Duc, Liesbeth van Oeffelen, Ningning Song, Gholamreza Hassanzadeh-Ghassabeh, Serge Muyldermans, Daniel Charlier and Eveline Peeters
    Citation: BMC Genomics 2013 14:828
    Content type: Research article Published on:

  39. Basic leucine zipper (bZIP) transcription factor gene family is one of the largest and most diverse families in plants. Current studies have shown that the bZIP proteins regulate numerous growth and developmen...

    Authors: Jinyi Liu, Nana Chen, Fei Chen, Bin Cai, Silvia Dal Santo, Giovanni Battista Tornielli, Mario Pezzotti and Zong-Ming (Max) Cheng
    Citation: BMC Genomics 2014 15:281
    Content type: Research article Published on:

  40. Soft tissue sarcoma (STS) diagnosis is challenging because of a multitude of histopathological subtypes, different genetic characteristics, and frequent intratumoral pleomorphism. One-third of STS metastasize ...

    Authors: Princy Francis, Heidi Maria Namløs, Christoph Müller, Patrik Edén, Josefin Fernebro, Jeanne-Marie Berner, Bodil Bjerkehagen, Måns Åkerman, Pär-Ola Bendahl, Anna Isinger, Anders Rydholm, Ola Myklebost and Mef Nilbert
    Citation: BMC Genomics 2007 8:73
    Content type: Research article Published on:

  41. Transcription factors (TFs) regulate gene transcription and play pivotal roles in various biological processes such as development, cell cycle progression, cell differentiation and tumor suppression. Identifying

    Authors: Alison P Lee, Yuchen Yang, Sydney Brenner and Byrappa Venkatesh
    Citation: BMC Genomics 2007 8:441
    Content type: Database Published on:

  42. Sox10, a member of the Sry-related HMG-Box gene family, is a critical transcription factor for several important cell lineages, most notably the neural crest stem cells and the derivative peripheral glial cell...

    Authors: Kyung Eun Lee, Seungyoon Nam, Eun-ah Cho, Ikjoo Seong, Jin-Kyung Limb, Sanghyuk Lee and Jaesang Kim
    Citation: BMC Genomics 2008 9:408
    Content type: Research article Published on:

  43. Plants engineered for abiotic stress tolerance may soon be commercialized. The engineering of these plants typically involves the manipulation of complex multigene networks and may therefore have a greater pot...

    Authors: Ashraf Abdeen, Jaimie Schnell and Brian Miki
    Citation: BMC Genomics 2010 11:69
    Content type: Research article Published on:

  44. Long term preservation of living ovarian tissues is a critical approach in human reproductive medicine as well as in the conservation of rare animal genotypes. Compared to single cell preservation, optimizatio...

    Authors: Olga Amelkina and Pierre Comizzoli
    Citation: BMC Genomics 2020 21:828
    Content type: Research article Published on:

  45. TetR-family transcriptional regulators (TFTRs) are DNA binding factors that regulate gene expression in bacteria. Well-studied TFTRs, such as AcrR, which regulates efflux pump expression, are usually encoded a...

    Authors: A. L. Colclough, J. Scadden and J. M. A. Blair
    Citation: BMC Genomics 2019 20:731
    Content type: Research article Published on:

  46. Atlantic salmon have been subject to domestication for approximately ten generations, beginning in the early 1970s. This process of artificial selection will have created various genetic differences between wi...

    Authors: Beatrix Bicskei, James E Bron, Kevin A Glover and John B Taggart
    Citation: BMC Genomics 2014 15:884
    Content type: Research article Published on:

  47. Plants have developed various sophisticated mechanisms to cope up with climate extremes and different stress conditions, especially by involving specific transcription factors (TFs). The members of the WRKY TF...

    Authors: Jeky Chanwala, Suresh Satpati, Anshuman Dixit, Ajay Parida, Mrunmay Kumar Giri and Nrisingha Dey
    Citation: BMC Genomics 2020 21:231
    Content type: Research article Published on:

  48. The expected increase of sustainable energy demand has shifted the attention towards bioenergy crops. Due to their know tolerance against abiotic stress and relatively low nutritional requirements, they have b...

    Authors: Danilo Fabrizio Santoro, Angelo Sicilia, Giorgio Testa, Salvatore Luciano Cosentino and Angela Roberta Lo Piero
    Citation: BMC Genomics 2022 23:427
    Content type: Research Published on:

  49. Melanin is an important antioxidant in food and has been used in medicine and cosmetology. Chicken meat with high melanin content from black-boned chickens have been considered a high nutritious food with pote...

    Authors: Tengfei Dou, Shixiong Yan, Lixian Liu, Kun Wang, Zonghui Jian, Zhiqiang Xu, Jingying Zhao, Qiuting Wang, Shuai Sun, Mir Zulqarnain Talpur, Xiaohua Duan, Dahai Gu, Yang He, Yanli Du, Alsoufi Mohammed Abdulwahid, Qihua Li…
    Citation: BMC Genomics 2022 23:173
    Content type: Research Published on:

  50. Endothelial differentiation occurs during normal vascular development in the developing embryo. This process is recapitulated in the adult when endothelial progenitor cells are generated in the bone marrow and...

    Authors: Vesna Nikolova-Krstevski, Manoj Bhasin, Hasan H Otu, Towia Libermann and Peter Oettgen
    Citation: BMC Genomics 2008 9:240
    Content type: Research article Published on:

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BMC Genomics

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