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BMC Genomics

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  1. Content type: Research article

    The WUR1000125 (WUR) single nucleotide polymorphism (SNP) can be used as a genetic marker for host response to porcine reproductive and respiratory syndrome (PRRS), PRRS vaccination, and co-infection with porcine...

    Authors: Jenelle R. Dunkelberger, Nick V. L. Serão, Ziqing Weng, Emily H. Waide, Megan C. Niederwerder, Maureen A. Kerrigan, Joan K. Lunney, Raymond R. R. Rowland and Jack C. M. Dekkers

    Citation: BMC Genomics 2017 18:865

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  2. Content type: Research article

    The olfactory system enables organisms to detect chemical cues in the environment and can signal the availability of food or the presence of a predator. Appropriate behavioral responses to these chemical cues ...

    Authors: Elizabeth B. Brown, Cody Patterson, Rayanne Pancoast and Stephanie M. Rollmann

    Citation: BMC Genomics 2017 18:867

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  3. Content type: Research article

    Viruses undergo extensive evolutionary selection for efficient replication which effects, among others, their codon distribution. In the current study, we aimed at understanding the way evolution shapes the co...

    Authors: Oriah Mioduser, Eli Goz and Tamir Tuller

    Citation: BMC Genomics 2017 18:866

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  4. Content type: Research article

    Shotgun proteomics utilizes a database search strategy to compare detected mass spectra to a library of theoretical spectra derived from reference genome information. As such, the robustness of proteomics resu...

    Authors: J. Michael Proffitt, Jeremy Glenn, Anthony J. Cesnik, Avinash Jadhav, Michael R. Shortreed, Lloyd M. Smith, Kylie Kavanagh, Laura A. Cox and Michael Olivier

    Citation: BMC Genomics 2017 18:877

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  5. Content type: Research article

    Erwinia amylovora is generally considered to be a homogeneous species in terms of phenotypic and genetic features. However, strains show variation in their virulence, particularly on h...

    Authors: Joanna Puławska, Monika Kałużna, Wojciech Warabieda and Artur Mikiciński

    Citation: BMC Genomics 2017 18:868

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  6. Content type: Research article

    The cyclic nucleotide-gated ion channel (CNGC) family affects the uptake of cations, growth, pathogen defence, and thermotolerance in plants. However, the systematic identification, origin and function of this...

    Authors: Kaleem U. Kakar, Zarqa Nawaz, Khadija Kakar, Essa Ali, Abdulwareth A. Almoneafy, Raqeeb Ullah, Xue-liang Ren and Qing-Yao Shu

    Citation: BMC Genomics 2017 18:869

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  7. Content type: Research article

    Diphtheria remains a major public health concern with multiple recent outbreaks around the world. Moreover, invasive non-toxigenic strains have emerged globally causing severe infections. A diphtheria epidemic...

    Authors: Steffen Grosse-Kock, Valentina Kolodkina, Edward C. Schwalbe, Jochen Blom, Andreas Burkovski, Paul A. Hoskisson, Sylvain Brisse, Darren Smith, Iain C. Sutcliffe, Leonid Titov and Vartul Sangal

    Citation: BMC Genomics 2017 18:873

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  8. Content type: Research article

    The therapeutic management of obesity is challenging, hence further elucidating the underlying mechanisms of obesity development and identifying new diagnostic biomarkers and therapeutic targets are urgent and...

    Authors: Weijing Wang, Wenjie Jiang, Lin Hou, Haiping Duan, Yili Wu, Chunsheng Xu, Qihua Tan, Shuxia Li and Dongfeng Zhang

    Citation: BMC Genomics 2017 18:872

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  9. Content type: Methdology article

    Amplicon deep sequencing permits sensitive detection of minority clones and improves discriminatory power for genotyping multi-clone Plasmodium falciparum infections. New amplicon sequencing and data analysis pro...

    Authors: Anita Lerch, Cristian Koepfli, Natalie E. Hofmann, Camilla Messerli, Stephen Wilcox, Johanna H. Kattenberg, Inoni Betuela, Liam O’Connor, Ivo Mueller and Ingrid Felger

    Citation: BMC Genomics 2017 18:864

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  10. Content type: Research article

    Cotton (Gossypium spp.) is commonly grouped into eight diploid genomic groups and an allotetraploid genomic group, AD. The mitochondrial genomes supply new information to understand both the evolution process and...

    Authors: Zhiwen Chen, Hushuai Nie, Yumei Wang, Haili Pei, Shuangshuang Li, Lida Zhang and Jinping Hua

    Citation: BMC Genomics 2017 18:876

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  11. Content type: Research article

    Monoallelic expression of autosomal genes has been implicated in human psychiatric disorders. However, there is a paucity of allelic expression studies in human brain cells at the single cell and genome wide l...

    Authors: Dejian Zhao, Mingyan Lin, Erika Pedrosa, Herbert M. Lachman and Deyou Zheng

    Citation: BMC Genomics 2017 18:860

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  12. Content type: Research

    Pseudomonas putida is a Gram-negative, non-fermenting bacterium frequently encountered in various environmental niches. P. putida rarely causes disease in humans, though serious infect...

    Authors: Silke Peter, Philipp Oberhettinger, Leonard Schuele, Ariane Dinkelacker, Wichard Vogel, Daniela Dörfel, Daniela Bezdan, Stephan Ossowski, Matthias Marschal, Jan Liese and Matthias Willmann

    Citation: BMC Genomics 2017 18:859

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  13. Content type: Research article

    Negative energy balance (NEB) is an imbalance between energy intake and energy requirements for lactation and body maintenance affecting high-yielding dairy cows and is of considerable economic importance due ...

    Authors: Daragh Matthews, Michael G. Diskin, David A. Kenny, Christopher J. Creevey, Kate Keogh and Sinead M. Waters

    Citation: BMC Genomics 2017 18:857

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  14. Content type: Research article

    Global trend of the introduction of high levels of relatively cheap carbohydrates to reduce the amount of costly protein in the aquatic animal feed production has affected the aquaculture of an economically im...

    Authors: Wassana Prisingkorn, Panita Prathomya, Ivan Jakovlić, Han Liu, Yu-Hua Zhao and Wei-Min Wang

    Citation: BMC Genomics 2017 18:856

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  15. Content type: Research article

    Lethal recessive variation can cause prenatal death of homozygous offspring. Although usually present at low-frequency in populations, the impact on individual fitness can be substantial. Until recently, the p...

    Authors: Martijn F. L. Derks, Hendrik-Jan Megens, Mirte Bosse, Marcos S. Lopes, Barbara Harlizius and Martien A. M. Groenen

    Citation: BMC Genomics 2017 18:858

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  16. Content type: Research article

    Chinese jujube (Ziziphus jujuba Mill.) is one of the most important members in the Rhamnaceae family. The whole genome sequence and more than 30,000 proteins of Chinese jujube have been obtained in 2014. Mitogen-...

    Authors: Zhiguo Liu, Liman Zhang, Chaoling Xue, Hu Fang, Jin Zhao and Mengjun Liu

    Citation: BMC Genomics 2017 18:855

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  17. Content type: Research

    Genotyping and whole-genome sequencing data have been generated for hundreds of thousands of cattle. International consortia used these data to compile imputation reference panels that facilitate the imputatio...

    Authors: Hubert Pausch, Reiner Emmerling, Birgit Gredler-Grandl, Ruedi Fries, Hans D. Daetwyler and Michael E. Goddard

    Citation: BMC Genomics 2017 18:853

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  18. Content type: Research article

    Tissue regeneration requires a series of steps, beginning with generation of the necessary cell mass, followed by cell migration into damaged area, and ending with differentiation and integration with surround...

    Authors: Ke’ale W. Louie, Alfonso Saera-Vila, Phillip E. Kish, Justin A. Colacino and Alon Kahana

    Citation: BMC Genomics 2017 18:854

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  19. Content type: Research article

    Sclerotinia Stem Rot (SSR), caused by the fungal pathogen Sclerotinia sclerotiorum, is ubiquitous in cooler climates where soybean crops are grown. Breeding for resistance to SSR remains challenging in crops like...

    Authors: Wei Wei, Ana Carolina Oliveira Mesquita, Adriana de A. Figueiró, Xing Wu, Shilpa Manjunatha, Daniel P. Wickland, Matthew E. Hudson, Fernando C. Juliatti and Steven J. Clough

    Citation: BMC Genomics 2017 18:849

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  20. Content type: Research article

    A vast amount of microarray data on transcriptomic response to injury has been collected so far. We designed the analysis in order to identify the genes displaying significant changes in expression after wound...

    Authors: Piotr Andrzej Sass, Michał Dąbrowski, Agata Charzyńska and Paweł Sachadyn

    Citation: BMC Genomics 2017 18:850

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  21. Content type: Research article

    Fragaria vesca or ‘woodland strawberry’ has emerged as an attractive model for the study of ripening of non-climacteric fruit. It has several advantages, such as its small genome and i...

    Authors: María Cecilia Opazo, Rodrigo Lizana, Yazmina Stappung, Thomas M. Davis, Raúl Herrera and María Alejandra Moya-León

    Citation: BMC Genomics 2017 18:852

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  22. Content type: Research article

    Switchgrass is a crop with many desirable traits for bioenergy production. Plant genomes have high DNA methylation levels throughout genes and transposable elements and DNA methylation is known to play a role ...

    Authors: Mollee Dworkin, Shaojun Xie, Malay Saha, Jyothi Thimmapuram and Venu (Kal) Kalavacharla

    Citation: BMC Genomics 2017 18:851

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  23. Content type: Research article

    Simple sequence repeats (SSR), also called microsatellites, have been widely used as genetic markers, and have been extensively studied in some model insects. At present, the genomes of more than 100 insect sp...

    Authors: Simin Ding, Shuping Wang, Kang He, Mingxing Jiang and Fei Li

    Citation: BMC Genomics 2017 18:848

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