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  1. Protoporphyrin IX (Pp IX) is the primary pigment for brown eggshells. However, the regulatory mechanisms directing Pp IX synthesis, transport, and genetic regulation during eggshell calcification in chickens r...

    Authors: Jing Yang, Zhiqiong Mao, Xiqiong Wang, Jingjie Zhuang, Sijia Gong, Zhouyang Gao, Guiyun Xu, Ning Yang and Congjiao Sun
    Citation: BMC Genomics 2022 23:761
  2. The cold pressor test (CPT) is a widely used pain provocation test to investigate both pain tolerance and cardiovascular responses. We hypothesize, that performing multi-omic analyses during CPT gives the oppo...

    Authors: Lisette J. A. Kogelman, Madeleine Ernst, Katrine Falkenberg, Gianluca Mazzoni, Julie Courraud, Li Peng Lundgren, Susan Svane Laursen, Arieh Cohen, Jes Olesen and Thomas Folkmann Hansen
    Citation: BMC Genomics 2022 23:759
  3. Hemiptera is one of the most speciose orders of insects, and the most speciose considering Hemimetabola. Through their evolutive history, hemipterans with different feeding habits have adapted to deal with dif...

    Authors: Mariano Volonté, Lucila Traverso, Jose Manuel Latorre Estivalis, Francisca Cunha Almeida and Sheila Ons
    Citation: BMC Genomics 2022 23:757
  4. Since inception of the COVID-19 pandemic, early detection and isolation of positive cases is one of the key strategies to restrict disease transmission. Real time reverse transcription polymerase chain reactio...

    Authors: Swati Gupta, Amit Kumar, Nivedita Gupta, Deepak R. Bharti, Neeraj Aggarwal and Vasanthapuram Ravi
    Citation: BMC Genomics 2022 23:755
  5. Although a number of imprinted genes are known to be highly expressed in the brain, and in certain brain regions in particular, whether they are truly over-represented in the brain has never been formally test...

    Authors: M. J. Higgs, M. J. Hill, R. M. John and A. R. Isles
    Citation: BMC Genomics 2022 23:754
  6. Continuous tilling and the lateral growth of rhizomes confer rhizomatous grasses with the unique ability to laterally expand, migrate and resist disturbances. They play key roles especially in degraded grassla...

    Authors: Jialin Li, Hongmei Li, Ning Yin, Xiaoyan Quan, Wenbo Wang, Qiuli Shan, Siqi Wang, Ramon Santos Bermudez and Wenxing He
    Citation: BMC Genomics 2022 23:753
  7. Elucidation of the genetic mechanisms underlying treatment response to standard induction chemotherapy in AML patients is warranted, in order to aid in risk-adapted treatment decisions as novel treatments are ...

    Authors: Ingrid Jakobsen, Max Sundkvist, Niclas Björn, Henrik Gréen and Kourosh Lotfi
    Citation: BMC Genomics 2022 23:752
  8. The dung beetle Phelotrupes auratus is a holometabolous insect belonging to the order Coleoptera, and it is widely distributed in Japan. The P. auratus habitat depends on herbivores. P. auratus eats the dung of t...

    Authors: Takuma Sakamoto, Shun Sinzeki, Shunsuke Kakinuma, Eri Ishihara and Hiroko Tabunoki
    Citation: BMC Genomics 2022 23:751
  9. Flowering time and active accumulated temperature (AAT) are two key factors that limit the expanded production especially for soybean across different regions. Wild soybean provides an important germplasm for ...

    Authors: Guang Yang, Wei Li, Chao Fan, Miao Liu, Jianxin Liu, Wenwei Liang, Ling Wang, Shufeng Di, Chao Fang, Haiyang Li, Guohua Ding, Yingdong Bi and Yongcai Lai
    Citation: BMC Genomics 2022 23:749
  10. Shotgun metagenome analysis provides a robust and verifiable method for comprehensive microbiome analysis of fungal, viral, archaeal and bacterial taxonomy, particularly with regard to visualization of read ma...

    Authors: Ilona Rosenboom, Tobias Scheithauer, Fabian C. Friedrich, Sophia Pörtner, Lisa Hollstein, Marie-Madlen Pust, Konstantinos Sifakis, Tom Wehrbein, Bodo Rosenhahn, Lutz Wiehlmann, Patrick Chhatwal, Burkhard Tümmler and Colin F. Davenport
    Citation: BMC Genomics 2022 23:748
  11. Understanding the micro-­evolutionary response of populations to demographic declines is a major goal in evolutionary and conservation biology. In small populations, genetic drift can lead to an accumulation o...

    Authors: Johanna von Seth, Tom van der Valk, Edana Lord, Hanna Sigeman, Remi-André Olsen, Michael Knapp, Olga Kardailsky, Fiona Robertson, Marie Hale, Dave Houston, Euan Kennedy, Love Dalén, Karin Norén, Melanie Massaro, Bruce C. Robertson and Nicolas Dussex
    Citation: BMC Genomics 2022 23:747
  12. So far, a lot of binning approaches have been intensively developed for untangling metagenome-assembled genomes (MAGs) and evaluated by two main strategies. The strategy by comparison to known genomes prevails...

    Authors: Ziyao Wu, Yuxiao Wang, Jiaqi Zeng and Yizhuang Zhou
    Citation: BMC Genomics 2022 23:746
  13. Here we respond to Zhou (BMC Genomics 21:734, 2020) “Combined Transcriptome and Metabolome analysis of Pitaya fruit unveiled the mechanisms underlying peel and pulp color formation” published in BMC Genomics. ...

    Authors: Boas Pucker and Samuel F. Brockington
    Citation: BMC Genomics 2022 23:739

    The Correspondence to this article has been published in BMC Genomics 2022 23:740

    The Research article to this article has been published in BMC Genomics 2020 21:734

  14. Plums are one of the most important economic crops of the Rosaceae family and are produced all over the world. China has many local varieties, but the genomic information is limited for genetic studies. Here, ...

    Authors: Yicen Xu, Bo Fang, Jingling Li, Yuanwei Wang, Jingting Liu, Chang Liu and Jie Yu
    Citation: BMC Genomics 2022 23:745
  15. Alternative splicing (AS) is an important channel for gene expression regulation and protein diversification, in addition to a major reason for the considerable differences in the number of genes and proteins ...

    Authors: Cong Gao, Shuai Lu, Rong Zhou, Junjie Ding, Jialiang Fan, Binying Han, Moxian Chen, Baohua Wang and Yunying Cao
    Citation: BMC Genomics 2022 23:744
  16. The bZIP gene family has important roles in various biological processes, including development and stress responses. However, little information about this gene family is available for Wheel Wingnut (Cyclocarya ...

    Authors: Yu-Tian Tao, Lu-Xi Chen, Jie Jin, Zhao-Kui Du and Jun-Min Li
    Citation: BMC Genomics 2022 23:743
  17. Pantoea agglomerans DAPP-PG 734 was isolated as endophyte from knots (tumors) caused by Pseudomonas savastanoi pv. savastanoi DAPP-PG 722 in olive trees. To understand the plant pathogen-endophyte interaction on ...

    Authors: Arburon Sulja, Joël F. Pothier, Jochen Blom, Chiaraluce Moretti, Roberto Buonaurio, Fabio Rezzonico and Theo H. M. Smits
    Citation: BMC Genomics 2022 23:742
  18. Nematodes are a major group of soil inhabiting organisms. Heterorhabditis nematodes are insect-pathogenic nematodes and live in a close symbiotic association with Photorhabdus bacteria. Heterorhabditis-Photorhabd...

    Authors: Chaitra G. Bhat, Roli Budhwar, Jeffrey Godwin, Adler R. Dillman, Uma Rao and Vishal S. Somvanshi
    Citation: BMC Genomics 2022 23:741
  19. Mytilidae, also known as marine mussels, are widely distributed in the oceans worldwide. Members of Mytilidae show a tremendous range of ecological adaptions, from the species distributed in freshwater to thos...

    Authors: Baojun Zhao, Shengtao Gao, Mingyang Zhao, Hongyu Lv, Jingyu Song, Hao Wang, Qifan Zeng and Jing Liu
    Citation: BMC Genomics 2022 23:738
  20. The hair coat is available for the yak to live in the harsh environment of the plateau. Besides, improving the hair production of yak is necessary for its textile industry development. Hair grows from hair fol...

    Authors: Xuelan Zhou, Pengjia Bao, Xiaolan Zhang, Xian Guo, Chunnian Liang, Min Chu, Xiaoyun Wu and Ping Yan
    Citation: BMC Genomics 2022 23:737
  21. Soil salinity is a problem in more than 100 countries across all continents. It is one of the abiotic stress that threatens agriculture the most, negatively affecting crops and reducing productivity. Transcrip...

    Authors: Thalita Massaro Malheiros Ferreira, Jaire Alves Ferreira Filho, André Pereira Leão, Carlos Antônio Ferreira de Sousa and Manoel Teixeira Jr. Souza
    Citation: BMC Genomics 2022 23:735
  22. Polyamines (PAs) are considered promising biostimulants that have diverse key roles during growth and stress responses in plants. Nevertheless, the molecular basis of these roles by PAs has not been completely...

    Authors: Heba Talat Ebeed
    Citation: BMC Genomics 2022 23:734
  23. The growing availability of genomic resources in radiata pine paves the way for significant advances in fundamental and applied genomic research. We constructed robust high-density linkage maps based on exome-...

    Authors: Jules S. Freeman, Gancho T. Slavov, Jakob B. Butler, Tancred Frickey, Natalie J. Graham, Jaroslav Klápště, John Lee, Emily J. Telfer, Phillip Wilcox and Heidi S. Dungey
    Citation: BMC Genomics 2022 23:731
  24. The rapid growth of annual shoots is detrimental to peach production. While gibberellin (GA) promotes the rapid growth of peach shoots, there is limited information on the identity and expression profiles of G...

    Authors: Mengmeng Zhang, Yangtao Ma, Xianbo Zheng, Bin Tan, Xia Ye, Wei Wang, Langlang Zhang, Jidong Li, Zhiqian Li, Jun Cheng and Jiancan Feng
    Citation: BMC Genomics 2022 23:730
  25. Crustose coralline algae (CCA) are calcifying red macroalgae that play important ecological roles including stabilisation of reef frameworks and provision of settlement cues for a range of marine invertebrates...

    Authors: Tessa M. Page, Carmel McDougall, Ido Bar and Guillermo Diaz-Pulido
    Citation: BMC Genomics 2022 23:729
  26. Isolates of Serratia entomophila and S. proteamaculans (Yersiniaceae) cause disease specific to the endemic New Zealand pasture pest, Costelytra giveni (Coleoptera: Scarabaeidae). Previous genomic profiling has s...

    Authors: Amy L. Vaughan, Eric Altermann, Travis R. Glare and Mark R. H. Hurst
    Citation: BMC Genomics 2022 23:728
  27. As one of the microelements, nitrogen play essential roles in cereal production. Although the use of chemical fertilizers has significantly improved the yield of wheat, it has also caused increasingly adverse ...

    Authors: Hanxia Wang, Qiaoyun Ma, Fuhua Shan, Liping Tian, Jie Gong, Wei Quan, Weibing Yang, Qiling Hou, Fengting Zhang and Shengquan Zhang
    Citation: BMC Genomics 2022 23:727
  28. Eukaryotic genome is compartmentalized into structural and functional domains. One of the concepts of higher order organization of chromatin posits that the DNA is organized in constrained loops that behave as...

    Authors: Rahul Sureka, Akshay Kumar Avvaru, Divya Tej Sowpati, Rashmi Upadhyay Pathak and Rakesh Kumar Mishra
    Citation: BMC Genomics 2022 23:725
  29. Salt stress is one of the most destructive environmental factors limiting crop growth and development. MicroRNAs (miRNAs) are a class of conserved endogenous small non-coding RNAs, playing the crucial role in ...

    Authors: Guang Yang, Wenqiu Pan, Rui Cao, Qifan Guo, Yue Cheng, Qinlong Zhao, Licao Cui and Xiaojun Nie
    Citation: BMC Genomics 2022 23:724
  30. During embryogenesis, the developmental potential of initially pluripotent cells becomes progressively restricted as they transit to lineage restricted states. The pluripotent cells of Xenopus blastula-stage embr...

    Authors: Kristin Johnson, Simon Freedman, Rosemary Braun and Carole LaBonne
    Citation: BMC Genomics 2022 23:723
  31. Merino sheep exhibit high wool production and excellent wool quality. The fleece of Merino sheep is predominantly composed of wool fibers grown from hair follicles (HFs). The HF is a complex biological system ...

    Authors: Junmin He, Xixia Huang, Bingru Zhao, Guifen Liu, Yuezhen Tian, Guoping Zhang, Chen Wei, Jingyi Mao and Kechuan Tian
    Citation: BMC Genomics 2022 23:722
  32. Homalodisca vitripennis Germar, the glassy-winged sharpshooter, is an invasive insect in California and a critical threat to agriculture through its transmission of the plant pathogen, Xylella fastidiosa. Quarant...

    Authors: Cassandra L. Ettinger, Frank J. Byrne, Inaiara de Souza Pacheco, Dylan J. Brown, Linda L. Walling, Peter W. Atkinson, Richard A. Redak and Jason E. Stajich
    Citation: BMC Genomics 2022 23:721
  33. Mantidis Ootheca (Sangpiaoxiao, mantis egg case) is a typical multi-origin Chinese medicinal material. The Chinese Pharmacopoeia stipulates that the Mantidis Ootheca originates from three species of Mantis: Tenod...

    Authors: Liuwei Xu, Xiaoying Zhang, Hua Guo, Xia Yang, Zhimei Xing, Wenzhi Yang, Jian Zhang and Xiaoxuan Tian
    Citation: BMC Genomics 2022 23:720
  34. The mechanistic target of rapamycin (mTOR) signal pathway plays a critical regulating role in the occurrence and development of cataract. However, the role of mTORC1 downstream proteins, including ribosomal pr...

    Authors: Yingjun Cai, Kangcheng Liu, Pengfei Wu, Ruolan Yuan, Fei He and Jing Zou
    Citation: BMC Genomics 2022 23:719
  35. Semiothisa cinerearia belongs to Geometridae, which is one of the most species-rich families of lepidopteran insects. It is also one of the most economically significant pests of the Chinese scholar tree (Sophora...

    Authors: Shengqi Chi, Yanchun Wang, Zhongkai Wang, Haorong Li, Songdong Gu and Yandong Ren
    Citation: BMC Genomics 2022 23:718
  36. The subgenus Gynopodium belonging to genus Magnolia have high ornamental, economic, and ecological value. Subgenus Gynopodium contains eight species, but six of these species are threatened. No studies to date ha...

    Authors: Huanhuan Xie, Lei Zhang, Cheng Zhang, Hong Chang, Zhenxiang Xi and Xiaoting Xu
    Citation: BMC Genomics 2022 23:716
  37. Mycobacteroides abscessus complex (MABC), an emerging pathogen, causes human infections resistant to multiple antibiotics. In this study, the genome data of 1,581 MABC strains were downloaded from NCBI database f...

    Authors: Shay Lee Chong, Joon Liang Tan and Yun Fong Ngeow
    Citation: BMC Genomics 2022 23:715
  38. Single primer enrichment technology (SPET) is an emerging and increasingly popular solution for high-throughput targeted genotyping in plants. Although SPET requires a priori identification of polymorphisms for p...

    Authors: Irina Baccichet, Remo Chiozzotto, Davide Scaglione, Daniele Bassi, Laura Rossini and Marco Cirilli
    Citation: BMC Genomics 2022 23:712
  39. The COVID-19 pandemic remains a global public health concern. Advances in sequencing technologies has allowed for high numbers of SARS-CoV-2 whole genome sequence (WGS) data and rapid sharing of sequences thro...

    Authors: Benjamin Sobkowiak, Kimia Kamelian, James E. A. Zlosnik, John Tyson, Anders Gonçalves da Silva, Linda M. N. Hoang, Natalie Prystajecky and Caroline Colijn
    Citation: BMC Genomics 2022 23:710

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