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  1. Resveratrol has been reported to promote immunity and decrease oxidative stress, but which demonstrates biphasic effects relied on the use concentration. In this study, the effects of diet supplement with a re...

    Authors: Shiyong Yang, Chaozhan Yan, Xiaojian Pang, Wuyuntana Shao, Zihan Xu, Datian Li, Wenqiang Xu, Zhehua Zhang, Boru Su, Yunkun Li, Jiayun Wu, Xiaoli Huang, Wei Luo and Xiaogang Du
    Citation: BMC Genomics 2024 25:821
    Content type: Research Published on:

  3. With the rise of publicly available genomic data repositories, it is now common for scientists to rely on computational models and preprocessed data, either as control or to discover new knowledge. However, di...

    Authors: Stefano Perna, Pietro Pinoli, Stefano Ceri and Limsoon Wong
    Citation: BMC Genomics 2024 25(Suppl 3):817
    Content type: Research Published on:

    This article is part of a Supplement: Volume 25 Supplement 3

  4. Cannabis sativa is seeing a global resurgence as a food, fiber and medicinal crop for industrial hemp and medicinal Cannabis industries respectively. However, a widespread moratorium on the use and research of C....

    Authors: Locedie Mansueto, Erwin Tandayu, Jos Mieog, Lennard Garcia-de Heer, Rekhamani Das, Adam Burn, Ramil Mauleon and Tobias Kretzschmar
    Citation: BMC Genomics 2024 25:818
    Content type: Research Published on:

  5. CINNAMYL ALCOHOL DEHYDROGENASE (CAD) catalyzes the NADPH-dependent reduction of cinnamaldehydes into cinnamyl alcohols and is a key enzyme found at the final step of the monolignol pathway. Cinnamyl alcohols a...

    Authors: Luigi M. Peracchi, Rhoda A.T. Brew-Appiah, Kimberly Garland-Campbell, Eric H. Roalson and Karen A. Sanguinet
    Citation: BMC Genomics 2024 25:816
    Content type: Research Published on:

  6. The DELLA proteins, a class of GA signaling repressors, belong to the GRAS family of plant-specific nuclear proteins. Members of DELLA gene family encode transcriptional regulators with diverse functions in plant...

    Authors: Houjun Zhou, Yanwen Wang, Xinyu Wang, Rui Cheng, Hongxia Zhang and Lei Yang
    Citation: BMC Genomics 2024 25:815
    Content type: Research Published on:

  7. The growth factor Neuregulin-1 (NRG1) has pleiotropic roles in proliferation and differentiation of the stem cell niche in different tissues. It has been implicated in gut, brain and muscle development and rep...

    Authors: Miguel A Berrocal-Rubio, Yair David Joseph Pawer, Marija Dinevska, Ricardo De Paoli-Iseppi, Samuel S. Widodo, Josie Gleeson, Nadia Rajab, Will De Nardo, Jeannette Hallab, Anran Li, Theo Mantamadiotis, Michael B. Clark and Christine A. Wells
    Citation: BMC Genomics 2024 25:814
    Content type: Research Published on:

  8. The invasive pest Spotted-Wing Drosophila, Drosophila suzukii (Matsumura), causes extensive damage and production losses of soft-skinned fruits. Native to Asia, the species has now spread worldwide, with first re...

    Authors: Sara Sario, João P. Marques, Liliana Farelo, Sandra Afonso, Conceição Santos and José Melo-Ferreira
    Citation: BMC Genomics 2024 25:813
    Content type: Research Published on:

  9. Staphylococci cause a wide range of infections, including implant-associated infections which are difficult to treat due to the presence of biofilms. Whilst some proteins involved in biofilm formation are know...

    Authors: Lisa Crossman, Leanne Sims, Rachael Dean, Heather Felgate, Teresa Diaz Calvo, Claire Hill, Iain McNamara, Mark A. Webber and John Wain
    Citation: BMC Genomics 2024 25:812
    Content type: Research Published on:

  10. Dermatophagoides farinae proteins (DFPs) are abundantly expressed in D. farinae; however, their functions remain unknown. Our previous transcriptome sequencing analyses revealed that the basal expression of DFP1 ...

    Authors: Wanyu Zhang, Dongling Niu, Yae Zhao, Li Hu, Chenglin Guan and Rong Chai
    Citation: BMC Genomics 2024 25:811
    Content type: Research Published on:

  11. The respiratory chain plays a key role in the growth of Mycobacterium tuberculosis complex (MTBC). However, the exact regulatory mechanisms of this system still need to be elucidated, and only a few studies have ...

    Authors: Yameng Li, Yifan Li, Yao Liu, Xianglong Kong, Ningning Tao, Yawei Hou, Tingting Wang, Qilin Han, Yuzhen Zhang, Fei Long and Huaichen Li
    Citation: BMC Genomics 2024 25:810
    Content type: Research Published on:

  13. Streptococcus suis (S. suis) is an important swine and human pathogen. A recent study reported the first isolate of S. suis capable of infecting fish, designated as S. suis strain 3112. The bacterium was isolated...

    Authors: Pakorn Aiewsakun, Wuthiwat Ruangchai, Bharkbhoom Jaemsai, Thavin Bodharamik, Watcharachai Meemetta and Saengchan Senapin
    Citation: BMC Genomics 2024 25:808
    Content type: Research Published on:

  15. Drought stress restricts the growth, distribution and productivity of alfalfa (Medicago sativa L.). In order to study the response differences of alfalfa cultivars to drought stress, we previously carried out phy...

    Authors: Wenli Quan and Xun Liu
    Citation: BMC Genomics 2024 25:806
    Content type: Research Published on:

  16. Hermansky-Pudlak Syndrome (HPS), a rare autosomal recessive disorder, is characterized by oculocutaneous albinism, bleeding diathesis, and sometimes severe lung problems and inflammatory bowel disease. Symptom...

    Authors: Seyyed Mohammad Kahani, Ali Rabbizadeh Saray, Mir Salar Kahaei, Ali Dehghani, Pouria Mohammadi and Masoud Garshasbi
    Citation: BMC Genomics 2024 25:805
    Content type: Research Published on:

  17. SET domain-containing histone lysine methyltransferases (HKMTs) and JmjC domain-containing histone demethylases (JHDMs) are essential for maintaining dynamic changes in histone methylation across parasite deve...

    Authors: Qindong Liang, Shangdi Zhang, Zeen Liu, Jinming Wang, Hong Yin, Guiquan Guan and Chongge You
    Citation: BMC Genomics 2024 25:804
    Content type: Research Published on:

  19. Plant long non-coding RNAs (lncRNAs) have important regulatory roles in responses to various biotic and abiotic stresses, including light quality. However, no lncRNAs have been specifically linked to the Shade...

    Authors: Irving Jair García-López, Aarón I. Vélez-Ramírez, C. Stewart Gillmor and Selene L. Fernandez-Valverde
    Citation: BMC Genomics 2024 25:802
    Content type: Research Published on:

  20. RNA sequencing (RNA-Seq) offers profound insights into the complex transcriptomes of diverse biological systems. However, standard differential expression analysis pipelines based on DESeq2 and edgeR encounter...

    Authors: Danny Wan, Andrew Cheng, Yuxuan Wang, Guangming Zhong, Wei Vivian Li and Huizhou Fan
    Citation: BMC Genomics 2024 25:801
    Content type: Research Published on:

  21. The Gα family plays a crucial role in the complex reproductive regulatory network of teleosts. However, the characterization and function of Gα family members, especially Gαq, remain poorly understood in teleo...

    Authors: Chong Wang, Shuting Xiong, Shitao Hu, Le Yang, Yuhong Huang, Haitai Chen, Baohong Xu, Tiaoyi Xiao and Qiaolin Liu
    Citation: BMC Genomics 2024 25:800
    Content type: Research Published on:

  22. As a Brassica crop, Brassica napus typically has single flowers that contain four petals. The double-flower phenotype of rapeseed has been a desirable trait in China because of its potential commercial value in o...

    Authors: Xiaowei Ma, Liangmiao Fan, Shenhua Ye, Yanping Chen, Yingying Huang, Lumei Wu, Lun Zhao, Bin Yi, Chaozhi Ma, Jinxing Tu, Jinxiong Shen, Tingdong Fu and Jing Wen
    Citation: BMC Genomics 2024 25:799
    Content type: Research Published on:

  24. R2R3-MYB transcription factors belong to one of the largest gene subfamilies in plants, and they are involved in diverse biological processes. However, the role of R2R3-MYB transcription factor subfamily genes in...

    Authors: Hao-Cheng Zhang, Yuan-Hang Gong, Tao Tao, Shuai Lu, Wen-Yu Zhou, Han Xia, Xin-Yi Zhang, Qing-Qing Yang, Ming-Qiu Zhang, Lian-Min Hong, Qian-Qian Guo, Xin-Zhe Ren, Zhi-Di Yang, Xiu-Ling Cai, De-Yong Ren, Ji-Ping Gao…
    Citation: BMC Genomics 2024 25:797
    Content type: Research Published on:

  25. The WD40 domain is one of the most abundant domains and is among the top interacting domains in eukaryotic genomes. The WD40 domain of ATG16L1 is essential for LC3 recruitment to endolysosomal membranes during...

    Authors: Xiuping Wu, Yang Yang, Yi Ru, Rongzeng Hao, Dongmei Zhao, Ruifang Ren, Bingzhou Lu, Yajun Li, Shengzhen Sun, Haixue Zheng and Wenhui Wang
    Citation: BMC Genomics 2024 25:796
    Content type: Research Published on:

  26. Bread wheat (Triticum aestivum L.) endosperm contains starch and proteins, which determine the final yield, quality, and nutritional value of wheat grain. The preferentially expressed endosperm genes can precisel...

    Authors: Jia Shi, Yuqian Zhao, Peng Zhao, Hongmei Yang, Chunsheng Wang, Jianqiang Xia, Zhun Zhao, Zhenlong Wang, Zhenyu Yang, Zhong Wang, Shengbao Xu and Yueqiang Zhang
    Citation: BMC Genomics 2024 25:795
    Content type: Research Published on:

  27. PSEUDO RESPONSE REGULATOR (PRR) genes are essential components of circadian clock, playing vital roles in multiple processes including plant growth, flowering and stress response. Nonetheless, little is known ab...

    Authors: Zhe Liu, Weijuan Liu, Zhangqing Wang, Zhihua Xie, Kaijie Qi, Dong Yue, Yu Li, Shaoling Zhang, Juyou Wu and Peng Wang
    Citation: BMC Genomics 2024 25:794
    Content type: Research Published on:

  28. Alcohol consumption is widely known to have detrimental effects on various organs and tissues. The effects of ethanol on male reproduction have been studied at the physiological and cellular levels, but no sys...

    Authors: Gwidong Han, Seung Jae Lee, Seung Pyo Hong, Jaeho Song and Chunghee Cho
    Citation: BMC Genomics 2024 25:793
    Content type: Research Published on:

  29. Hylurgus ligniperda (Coleoptera: Curculionidae) is a worldwide forest quarantine pest. It is widely distributed, has many host tree species, and possesses strong adaptability. To explore its environmental adaptab...

    Authors: Zhiqian Chen, Lili Ren, Jiaxing Li, Ningning Fu, Quanzheng Yun and Youqing Luo
    Citation: BMC Genomics 2024 25:792
    Content type: Research Published on:

  30. Acinetobacter baumannii is a gram-negative bacillus prevalent in nature, capable of thriving under various environmental conditions. As an opportunistic pathogen, it frequently causes nosocomial infections suc...

    Authors: Yizhong Xu, Fei Zhu, Ziyou Zhou, Shiyang Ma, Peipei Zhang, Caixia Tan, Yuying Luo, Rongliu Qin, Jie Chen and Pinhua Pan
    Citation: BMC Genomics 2024 25:791
    Content type: Research Published on:

  32. Detecting very minor (< 1%) subpopulations using next-generation sequencing is a critical need for multiple applications, including the detection of drug resistant pathogens and somatic variant detection in on...

    Authors: Christopher J. Allender, Candice L. Wike, W. Tanner Porter, Dean Ellis, Darrin Lemmer, Stephanie J. K. Pond and David M. Engelthaler
    Citation: BMC Genomics 2024 25:789
    Content type: Research Published on:

  33. Somatic embryogenesis (SE) exemplifies the unique developmental plasticity of plant cells. The regulatory processes, including epigenetic modifications controlling embryogenic reprogramming of cell transcripto...

    Authors: Barbara Wójcikowska, Karolina Chwiałkowska, Katarzyna Nowak, Sylvie Citerne, Joanna Morończyk, Anna Maria Wójcik, Agnieszka Kiwior-Wesołowska, Jacek Francikowski, Mirosław Kwaśniewski and Małgorzata Danuta Gaj
    Citation: BMC Genomics 2024 25:788
    Content type: Research Published on:

  34. This study aims to elucidate the genetic causes of congenital hypogonadotropic hypogonadism (CHH), a rare genetic disorder resulting in GnRH deficiency, in six families from Pakistan.

    Authors: Yassine Zouaghi, Anbreen Mazhar Choudhary, Saba Irshad, Michela Adamo, Khaleeq ur Rehman, Ambrin Fatima, Mariam Shahid, Nida Najmi, Fernanda De Azevedo Correa, Imen Habibi, Alexia Boizot, Nicolas J. Niederländer, Muhammad Ansar, Federico Santoni, James Acierno and Nelly Pitteloud
    Citation: BMC Genomics 2024 25:787
    Content type: Research Published on:

  36. To reduce the use of antibiotics and chemicals in aquaculture, an edible herb, Bidens pilosa, has been selected as a multifunctional feed additive. Although there has been considerable research into the effects o...

    Authors: Che-Chun Chen, Chung-Yen Lin, Hsin-Yun Lu, Chyng-Hwa Liou, Ying-Ning Ho, Chang-Wen Huang, Zhong-Fu Zhang, Chih-Hsin Kao, Wen-Chin Yang and Hong-Yi Gong
    Citation: BMC Genomics 2024 25:785
    Content type: Research Published on:

  37. Chinese cherry [Cerasus pseudocerasus (Lindl.) G.Don] (syn. Prunus pseudocerasus Lindl.) is an economically important fruiting cherry species with a diverse range of attractive colors, spanning from the lightest ...

    Authors: Yan Wang, Hongxia Tu, Jing Zhang, Hao Wang, Zhenshan Liu, Jingting Zhou, Wen He, Yuanxiu Lin, Yunting Zhang, Mengyao Li, Zhiwei Wu, Qing Chen, Yong Zhang, Ya Luo, Haoru Tang and Xiaorong Wang
    Citation: BMC Genomics 2024 25:784
    Content type: Research Published on:

  38. Soybean represents a vital source of premium plant-based proteins for human nutrition. Importantly, the level of water-soluble protein (WSP) is crucial for determining the overall quality and nutritional value...

    Authors: Xujuan Zhang, Fengmin Wang, Qiang Chen, Qingsong Zhao, Tiantian Zhao, Xuejie Hu, Luping Liu, Jin Qi, Yake Qiao, Mengchen Zhang, Chunyan Yang and Jun Qin
    Citation: BMC Genomics 2024 25:783
    Content type: Research Published on:

  39. The Lin−Sca1+c-Kit+ (LSK) fraction of the bone marrow (BM) comprises multipotent hematopoietic stem cells (HSCs), which are vital to tissue homeostasis and vascular repair. While diabetes affects HSC homeostasis ...

    Authors: Neha Mahajan, Qianyi Luo, Surabhi Abhyankar and Ashay D. Bhatwadekar
    Citation: BMC Genomics 2024 25:782
    Content type: Research Published on:

  40. Alfalfa (Medicago sativa L.) is the most widely planted legume forage and one of the most economically valuable crops in the world. Serine hydroxymethyltransferase (SHMT), a pyridoxal phosphate-dependent enzyme, ...

    Authors: Rong Gao, Lijuan Chen, Fenqi Chen and Huiling Ma
    Citation: BMC Genomics 2024 25:781
    Content type: Research Published on:

  42. Catalpa bungei, a tree indigenous to China, is renowned for its superior timber quality and as an ornamental in horticulture. To promote the cultivation of C. bungei in cold regions and expand its distribution, e...

    Authors: Pingan Bao, Jingshuang Sun, Guanzheng Qu, Maolin Yan, Shiping Cheng, Wenjun Ma, Junhui Wang and Ruiyang Hu
    Citation: BMC Genomics 2024 25:779
    Content type: Research Published on:

  43. DNA sequencing is a critical tool in modern biology. Over the last two decades, it has been revolutionized by the advent of massively parallel sequencing, leading to significant advances in the genome and tran...

    Authors: Silvia Liu, Caroline Obert, Yan-Ping Yu, Junhua Zhao, Bao-Guo Ren, Jia-Jun Liu, Kelly Wiseman, Benjamin J. Krajacich, Wenjia Wang, Kyle Metcalfe, Mat Smith, Tuval Ben-Yehezkel and Jian-Hua Luo
    Citation: BMC Genomics 2024 25:778
    Content type: Research Published on:

  44. Bacteria of the genus Xanthomonas cause economically significant diseases in various crops. Their virulence is dependent on the translocation of type III effectors (T3Es) into plant cells by the type III secretio...

    Authors: Thomas Quiroz Monnens, Brice Roux, Sébastien Cunnac, Erika Charbit, Sébastien Carrère, Emmanuelle Lauber, Marie-Françoise Jardinaud, Armelle Darrasse, Matthieu Arlat, Boris Szurek, Olivier Pruvost, Marie-Agnès Jacques, Lionel Gagnevin, Ralf Koebnik, Laurent D. Noël and Alice Boulanger
    Citation: BMC Genomics 2024 25:777
    Content type: Research Published on:

  45. Transcription factors (TFs) of plant-specific SHORT INTERNODES (SHI) family play a significant role in regulating development and metabolism in plants. In Artemisia annua, various TFs from different families have...

    Authors: Yinkai Yang, Yongpeng Li, Li Jin, Pengyang Li, Qin Zhou, Miaomiao Sheng, Xiaojing Ma, Tsubasa Shoji, Xiaolong Hao and Guoyin Kai
    Citation: BMC Genomics 2024 25:776
    Content type: Research Published on:

  46. Appropriate regulation of genes expressed in oocytes and embryos is essential for acquisition of developmental competence in mammals. Here, we hypothesized that several genes expressed in oocytes and pre-impla...

    Authors: Gustavo P. Schettini, Michael Morozyuk and Fernando H. Biase
    Citation: BMC Genomics 2024 25:775
    Content type: Research Published on:

  47. Pseudomonas juntendi is a newly identified opportunistic pathogen, of which we have limited understanding. P. juntendi strains are often multidrug resistant, which complicates clinical management of infection.

    Authors: Shiman Jiang, Yaling Li, Kefan Bi, Sisi Yang, He Xia, Shengjie Li, Hui Chen and Lanjuan Li
    Citation: BMC Genomics 2024 25:774
    Content type: Research Published on:

  48. Fritillaria ussuriensis is an endangered medicinal plant known for its notable therapeutic properties. Unfortunately, its population has drastically declined due to the destruction of forest habitats. Thus, effec...

    Authors: Ping Xie, Jingru Wu, Mengyue Lu, Tongxin Tian, Dongmei Wang, Zhiwen Luo, Donghong Yang, Lili Li, Xuewen Yang, Decai Liu, Haitao Cheng, Jiaxin Tan, Hongsheng Yang and Dequan Zhu
    Citation: BMC Genomics 2024 25:773
    Content type: Research Published on:

  49. The Icelandic horse and Exmoor pony are ancient, native breeds, adapted to harsh environmental conditions and they have both undergone severe historic bottlenecks. However, in modern days, the selection pressu...

    Authors: Heiðrún Sigurðardóttir, Michela Ablondi, Thorvaldur Kristjansson, Gabriella Lindgren and Susanne Eriksson
    Citation: BMC Genomics 2024 25:772
    Content type: Research Published on:

  50. Prolonged or chronic social isolation has pronounced effects on animals, ranging from altered stress responses, increased anxiety and aggressive behaviour, and even increased mortality. The effects of shorter ...

    Authors: Patricia C. Lopes, Madeleine Chang, Faith Holloway, Biola Fatusin, Sachin Patel, Chandler Siemonsma and Morgan Kindel
    Citation: BMC Genomics 2024 25:771
    Content type: Research Published on:

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BMC Genomics

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