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  1. Microspore embryogenesis is an extraordinarily complicated process, comprehensively regulated by a composite network of physiological and molecular factors, among which hormone is one of the most crucial facto...

    Authors: Chenggang Wang, Peiyu Zhang, Yun He, Furong Huang, Xu Wang, Hong Li, Lingyun Yuan, Jinfeng Hou, Guohu Chen, Wenjie Wang, Jianqiang Wu and Xiaoyan Tang
    Citation: BMC Genomics 2023 24:380
  2. Basic leucine zipper (bZIP) proteins are important transcription factors in plants. To study the role of bZIP transcription factors in walnut explant browning, this study used bioinformatics software to analyz...

    Authors: Hui Wang, Jiali Peng, Yaoling Li, Lishan Xu, Wenqiang Dai and Shugang Zhao
    Citation: BMC Genomics 2023 24:377
  3. Pedigree-based inbreeding coefficients have been generally included in statistical models for genetic evaluation of Japanese Black cattle. The use of genomic data is expected to provide precise assessment of i...

    Authors: Motohide Nishio, Keiichi Inoue, Shinichiro Ogawa, Kasumi Ichinoseki, Aisaku Arakawa, Yo Fukuzawa, Toshihiro Okamura, Eiji Kobayashi, Masaaki Taniguchi, Mika Oe and Kazuo Ishii
    Citation: BMC Genomics 2023 24:376
  4. Vibrio spp. are a diverse group of ecologically important marine bacteria responsible for several foodborne outbreaks of gastroenteritis around the world. Their detection and characterization are moving away from...

    Authors: Sabrina Flütsch, Fabian Wiestner, Lisa Butticaz, Dominik Moor and Kai N. Stölting
    Citation: BMC Genomics 2023 24:375
  5. Cancer-cachexia (CC) is a debilitating condition affecting up to 80% of cancer patients and contributing to 40% of cancer-related deaths. While evidence suggests biological sex differences in the development o...

    Authors: Francielly Morena da Silva, Seongkyun Lim, Ana Regina Cabrera, Eleanor R. Schrems, Ronald G. Jones, Megan E. Rosa-Caldwell, Tyrone A. Washington, Kevin A. Murach and Nicholas P. Greene
    Citation: BMC Genomics 2023 24:374
  6. Protein kinase CK2 activity is implicated in the pathogenesis of various hematological malignancies like Acute Myeloid Leukemia (AML) that remains challenging concerning treatment. This kinase has emerged as a...

    Authors: Dania Vázquez-Blomquist, Ailyn C. Ramón, Mauro Rosales, George V. Pérez, Ailenis Rosales, Daniel Palenzuela, Yasser Perera and Silvio E. Perea
    Citation: BMC Genomics 2023 24:373
  7. A common feature of single-cell RNA-seq (scRNA-seq) data is that the number of cells in a cell cluster may vary widely, ranging from a few dozen to several thousand. It is not clear whether scRNA-seq data from...

    Authors: Yong Liu, Jing Huang, Rajan Pandey, Pengyuan Liu, Bhavika Therani, Qiongzi Qiu, Sridhar Rao, Aron M. Geurts, Allen W. Cowley Jr, Andrew S. Greene and Mingyu Liang
    Citation: BMC Genomics 2023 24:371
  8. Cell death plays a crucial role in the progression of active tuberculosis (ATB) from latent infection (LTBI). Cuproptosis, a novel programmed cell death, has been reported to be associated with the pathology o...

    Authors: Liang Chen, Jie Hua and Xiaopu He
    Citation: BMC Genomics 2023 24:368
  9. Intramuscular fat (IMF) is closely related to the tenderness, marbling, juiciness, and flavor of meat. We used a combined transcriptome and metabolome analysis to investigate the molecular mechanisms underlyin...

    Authors: Hengwei Yu, Jianfang Wang, Ke Zhang, Gong Cheng, Chugang Mei and Linsen Zan
    Citation: BMC Genomics 2023 24:367
  10. Ulmus mianzhuensis is an endemic tree species in China with high ornamental and economic value. Currently, little is known regarding its genomic architecture, phylogenetic position, or adaptive evolution. Here, w...

    Authors: Nan Lin, Rui Liu, Yakun Wang, Peng Guo, Yihan Wang, Yanpei Liu and Fude Shang
    Citation: BMC Genomics 2023 24:366
  11. The genetics of male fertility is complex and not fully understood. Male subfertility can adversely affect the economics of livestock production. For example, inadvertently mating bulls with poor fertility can...

    Authors: Wei Liang Andre Tan, Laercio Ribeiro Porto Neto, Antonio Reverter, Michael McGowan and Marina Rufino Salinas Fortes
    Citation: BMC Genomics 2023 24:365
  12. The liver is a principal metabolic organ and has a major role in regulating lipid metabolism. With the development of rapidly fattening livestock in the modern breeding industry, the incidence of hepatic steat...

    Authors: Hui Mi, Fan Hu, Kefyalew Gebeyew, Yan Cheng, Ruiping Du, Min Gao, Zhixiong He and Zhiliang Tan
    Citation: BMC Genomics 2023 24:364
  13. Monogenea (Platyhelminthes, Neodermata) are the most species-rich class within the Neodermata superclass of primarily fish parasites. Despite their economic and ecological importance, monogenean research tends...

    Authors: Jiří Vorel, Nikol Kmentová, Christoph Hahn, Petr Bureš and Martin Kašný
    Citation: BMC Genomics 2023 24:363
  14. PYL (Pyrabactin resistance 1-like) protein is a receptor of abscisic acid (ABA), which plays an important role in ABA signaling and influences plant growth and development and stress response. However, studies...

    Authors: Yanlin An, Xiaozeng Mi, Xiaobo Xia, Dahe Qiao, Shirui Yu, Huayan Zheng, Tingting Jing and Feng Zhang
    Citation: BMC Genomics 2023 24:362
  15. The reliability of culture-independent pathogen detection in foods using metagenomics is contingent on the quality and composition of the reference database. The inclusion of microbial sequences from a diverse...

    Authors: Jillian Rumore, Matthew Walker, Franco Pagotto, Jessica D. Forbes, Christy-Lynn Peterson, Andrea D. Tyler, Morag Graham, Gary Van Domselaar, Celine Nadon, Aleisha Reimer and Natalie Knox
    Citation: BMC Genomics 2023 24:361
  16. The taxonomy and infrageneric delimitation of Phalaenopsis Blume has been significantly disputed due to some overlapping morphological features between species related, which needed further evidence for clarifica...

    Authors: Lei Tao, Hanning Duan, Kaifeng Tao, Yan Luo, Qingqing Li and Lu Li
    Citation: BMC Genomics 2023 24:359
  17. WRKY transcription factors are a prominent gene family in plants, playing a crucial role in various biological processes including development, metabolism, defense, differentiation, and stress response. Although ...

    Authors: Quangang Liu, Shipeng Wang, Jiaxing Wen, Jianhua Chen, Yongqiang Sun and Shengjun Dong
    Citation: BMC Genomics 2023 24:358
  18. Hepatocellular carcinoma (HCC), which has a complex pathogenesis and poor prognosis, is one of the most common malignancies worldwide. Hepatitis virus B infection is the most common cause of HCC in Asian patie...

    Authors: Yanjie Wang, Sijia Huang, Yingtian Zhang, Yaping Cheng, Liya Dai, Wenwen Gao, Zhengyang Feng, Jialong Tao and Yusong Zhang
    Citation: BMC Genomics 2023 24:357
  19. The female reproductive tract is exposed directly to the male’s ejaculate, making it a hotspot for mating-induced responses. In Drosophila melanogaster, changes in the reproductive tract are essential to optimize...

    Authors: Sofie Y. N. Delbare, Asha M. Jain, Andrew G. Clark and Mariana F. Wolfner
    Citation: BMC Genomics 2023 24:356
  20. Domestic geese are seasonal breeders and have the lowest reproductive capacity among all poultry species. Magang geese is a topical short-day breeder, short photoperiod exposure stimulates its reproductive act...

    Authors: Jiaxin Liu, Yanglong Xu, Yushuai Wang, Jinning Zhang, Yuting Fu, Sui Liufu, Danli Jiang, Jianqiu Pan, Hongjia Ouyang, Yunmao Huang, Yunbo Tian and Xu Shen
    Citation: BMC Genomics 2023 24:355
  21. BBX proteins play important roles in all of the major light-regulated developmental processes. However, no systematic analysis of BBX gene family regarding the regulation of photoperiodic microtuber formation has...

    Authors: Yingying Chang, Haoyuan Sun, Shiyu Liu, Yulong He, Shanshan Zhao, Jiage Wang, Tianle Wang, Jiangli Zhang, Jin Gao, Qingxiang Yang, Mingjun Li and Xiting Zhao
    Citation: BMC Genomics 2023 24:354
  22. As one of the components of visual photopigments in photoreceptor cells, opsin exhibits different spectral peaks and plays crucial roles in visual function. Besides, it is discovered to evolve other functions ...

    Authors: Jia-Bao Lu, Ze-Dong Li, Zhuang-Xin Ye, Hai-Jian Huang, Jian-Ping Chen, Jun-Min Li and Chuan-Xi Zhang
    Citation: BMC Genomics 2023 24:353
  23. Clonostachys rosea is an established biocontrol agent. Selected strains have either mycoparasitic activity against known pathogens (e.g. Fusarium species) and/or plant growth promoting activity on various crops. ...

    Authors: Adilah Bahadoor, Kelly A. Robinson, Michele C. Loewen and Zerihun A. Demissie
    Citation: BMC Genomics 2023 24:352
  24. The development of the brain requires precise coordination of molecular processes across many cell-types. Underpinning these events are gene expression programs which require intricate regulation by non-coding...

    Authors: Miguel Ramirez, Remi Robert, Joanna Yeung, Joshua Wu, Ayasha Abdalla-Wyse and Daniel Goldowitz
    Citation: BMC Genomics 2023 24:351
  25. Poa annua (annual bluegrass) is an allotetraploid turfgrass, an agronomically significant weed, and one of the most widely dispersed plant species on earth. Here, we report the chromosome-scale genome assemblies ...

    Authors: Christopher W. Benson, Matthew R. Sheltra, Peter J. Maughan, Eric N. Jellen, Matthew D. Robbins, B. Shaun Bushman, Eric L. Patterson, Nathan D. Hall and David R. Huff
    Citation: BMC Genomics 2023 24:350

    The Correction to this article has been published in BMC Genomics 2023 24:404

  26. T cell receptor repertoires can be profiled using next generation sequencing (NGS) to measure and monitor adaptive dynamical changes in response to disease and other perturbations. Genomic DNA-based bulk seque...

    Authors: Burcu Gurun, Wesley Horton, Dhaarini Murugan, Biqing Zhu, Patrick Leyshock, Sushil Kumar, Katelyn T. Byrne, Robert H. Vonderheide, Adam A. Margolin, Motomi Mori, Paul T. Spellman, Lisa M. Coussens and Terence P. Speed
    Citation: BMC Genomics 2023 24:349
  27. Moso bamboo (Phyllostachys edulis) is a typical East Asian bamboo that does not flower for > 60 years and propagates without seed reproduction. Thus, Moso bamboo can be propagated vegetatively, possibly resulting...

    Authors: Norihide Nishiyama, Akihisa Shinozawa, Takashi Matsumoto and Takeshi Izawa
    Citation: BMC Genomics 2023 24:348
  28. In large-scale high-throughput sequencing projects and biobank construction, sample tagging is essential to prevent sample mix-ups. Despite the availability of fingerprint panels for DNA data, little research ...

    Authors: Zhe Xu, Si Cheng, Xin Qiu, Xiaoqi Wang, Qiuwen Hu, Yanfeng Shi, Yang Liu, Jinxi Lin, Jichao Tian, Yongfei Peng, Yong Jiang, Yadong Yang, Jianwei Ye, Yilong Wang, Xia Meng, Zixiao Li…
    Citation: BMC Genomics 2023 24:347
  29. Pinus is the largest genus of Pinaceae and the most primitive group of modern genera. Pines have become the focus of many molecular evolution studies because of their wide use and ecological significance. However...

    Authors: Qijing Xia, Hongbin Zhang, Dong Lv, Yousry A. El-Kassaby and Wei Li
    Citation: BMC Genomics 2023 24:346
  30. Poplar is one of the main urban and rural greening and shade tree species in the northern hemisphere, but its growth and development is always restricted by salt stress. R2R3-MYB transcription factor family is...

    Authors: Jia Hu, Shengqiang Zou, Juanjuan Huang, Xuhui Huan, Xia Jin, Lieding Zhou, Kai Zhao, Youzhi Han and Shengji Wang
    Citation: BMC Genomics 2023 24:345
  31. Tea geometrid Ectropis grisescens (Geometridae: Lepidoptera), is one of the most destructive defoliators in tea plantations in China. The MAPK cascade is known to be an evolutionarily conserved signaling module, ...

    Authors: Xiaozhu Wu, Chenghua Zhou, Xiaofang Li, Jingyi Lin, Luis Carlos Ramos Aguila, Feng Wen and Liande Wang
    Citation: BMC Genomics 2023 24:344

    The Correction to this article has been published in BMC Genomics 2023 24:394

  32. The tobacco thrips (Frankliniella fusca Hinds; family Thripidae; order Thysanoptera) is an important pest that can transmit viruses such as the tomato spotted wilt orthotospovirus to numerous economically importa...

    Authors: Michael A. Catto, Paul E. Labadie, Alana L. Jacobson, George G. Kennedy, Rajagopalbabu Srinivasan and Brendan G. Hunt
    Citation: BMC Genomics 2023 24:343
  33. Tibetan chickens (Gallus gallus; TBCs), an indigenous breed distributed in the Qinghai-Tibet Plateau, are well adapted to the hypoxic environment. Currently, the molecular genetic basis of hypoxia adaptation in T...

    Authors: Qiguo Tang, Runjie Yu, Yubei Wang, Fuyin Xie, Hao Zhang, Changxin Wu and Meiying Fang
    Citation: BMC Genomics 2023 24:342
  34. Glutathione S-transferases (GSTs) are large and multifunctional proteases that play an important role in detoxification, protection against biotic and abiotic stresses, and secondary metabolite transportation ...

    Authors: Zejun Mo, Ying Huang, Tianxiunan Pu, Lili Duan, Kai Pi, Jiajun Luo, Benshan Long, Anbin Lu and Renxiang Liu
    Citation: BMC Genomics 2023 24:341
  35. Oriental river prawn (Macrobrachium nipponense) is one of the most dominant species in shrimp farming in China, which is a rich source of protein and contributes to a significant impact on the quality of human li...

    Authors: Cheng-Yan Mou, Qiang Li, Zhi-Peng Huang, Hong-Yu Ke, Han Zhao, Zhong-Meng Zhao, Yuan-Liang Duan, Hua-Dong Li, Yu Xiao, Zhou-Ming Qian, Jun Du, Jian Zhou and Lu Zhang
    Citation: BMC Genomics 2023 24:340
  36. The plant bug, Pachypeltis micranthus Mu et Liu (Hemiptera: Miridae), is an effective potential biological control agent for Mikania micrantha H.B.K. (Asteraceae; one of the most notorious invasive weeds worldwid...

    Authors: Xiafei Wang, Ning Zhao, Liqiong Cai, Naiyong Liu, Jiaying Zhu and Bin Yang
    Citation: BMC Genomics 2023 24:339
  37. The search for quantitative trait loci (QTL) affecting traits of interest in mammals is frequently limited to autosomes, with the X chromosome excluded because of its hemizygosity in males. This study aimed to...

    Authors: Marie-Pierre Sanchez, Clémentine Escouflaire, Aurélia Baur, Fiona Bottin, Chris Hozé, Mekki Boussaha, Sébastien Fritz, Aurélien Capitan and Didier Boichard
    Citation: BMC Genomics 2023 24:338
  38. Wall associated kinase (WAK) and WAK-like (WAKL) are typical pattern recognition receptors act as the first sentry of plant defense. But little of WAK/WAKL family is known in Rosaceae.

    Authors: Zicheng Wang, Yuan Ma, Meng Chen, Lingling Da, Zhen Su, Zhao Zhang and Xintong Liu
    Citation: BMC Genomics 2023 24:337
  39. Labeo rohita is the most preferred freshwater carp species in India. The concern of increasing salinity concentration in freshwater bodies due to climate change may greatly impact the aquatic environment. Gills a...

    Authors: Vemula Harshini, Nitin Shukla, Ishan Raval, Sujit Kumar, Vivek Shrivastava, Aparna Chaudhari, Amrutlal K. Patel and Chaitanya G. Joshi
    Citation: BMC Genomics 2023 24:336
  40. Genomic prediction of breeding values (GP) has been adopted in evolutionary genomic studies to uncover microevolutionary processes of wild populations or improve captive breeding strategies. While recent evolu...

    Authors: Seyed Milad Vahedi, Siavash Salek Ardetani, Luiz F. Brito, Karim Karimi, Kian Pahlavan Afshari and Mohammad Hossein Banabazi
    Citation: BMC Genomics 2023 24:335
  41. Panax ginseng is a perennial herb and one of the most widely used traditional medicines in China. During its long growth period, it is affected by various environmental factors. Past studies have shown that grow...

    Authors: Ping Wang, Ying Xiao, Min Yan, Yan Yan, Xiujuan Lei, Peng Di and Yingping Wang
    Citation: BMC Genomics 2023 24:334
  42. Subacute ruminal acidosis (SARA) is a metabolic disorder often observed in high-yielding dairy cows, that are fed diets high in concentrates. We hypothesized that circulating miRNAs in blood of cows could serv...

    Authors: O. E. Ojo, L. Hajek, S. Johanns, C. Pacífico, A. Sener-Aydemir, S. Ricci, R. Rivera-Chacon, E. Castillo-Lopez, N. Reisinger, Q. Zebeli and S. Kreuzer-Redmer
    Citation: BMC Genomics 2023 24:333
  43. Balanophoraceae plastomes are known for their highly condensed and re-arranged nature alongside the most extreme nucleotide compositional bias known to date, culminating in two independent reconfigurations of ...

    Authors: Woorin Kim, Thea Lautenschläger, Jay F. Bolin, Mathew Rees, Albertina Nzuzi, Renchao Zhou, Stefan Wanke and Matthias Jost
    Citation: BMC Genomics 2023 24:330
  44. Branching is a plastic character that affects plant architecture and spatial structure. The trait is controlled by a variety of plant hormones through coordination with environmental signals. Plant AT-rich seq...

    Authors: Jiuyang Li, Yongliang Zhao, Yaohui Zhang, Feng Ye, Zhengcun Hou, Yuhang Zhang, Longjie Hao, Guofang Li, Jianzhu Shao and Ming Tan
    Citation: BMC Genomics 2023 24:329
  45. Retinal neovascularization (RNV) is a leading cause of blindness worldwide. Long non-coding RNA (lncRNA) and competing endogenous RNA (ceRNA) regulatory networks play vital roles in angiogenesis. The RNA-bindi...

    Authors: Ning Yang, Ningzhi Zhang, Zhiyi Wang, Wenye Cao, Xuejun He, Wenxi Zhang and Yiqiao Xing
    Citation: BMC Genomics 2023 24:327

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