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  1. Pancreatic ductal adenocarcinoma (PDAC) is one of the most malignant tumors and approximately 5% of patients with chronic pancreatitis (CP) inevitably develop PDAC. This study aims explore the key gene regulat...

    Authors: Zhirong Zhao, Qiang Luo, Yi Liu, Kexin Jiang, Lichen Zhou, Ruiwu Dai and Han Wang
    Citation: BMC Genomics 2023 24:101
    Content type: Research Published on:

  2. Apis cerana is widely distributed in China and, prior to the introduction of western honeybees, was the only bee species kept in China. During the long-term natural evolutionary process, many unique phenotypic va...

    Authors: Yi Zhang, Hao Xu, Zhi Wang, Haoliang Jie, Fuchao Gao, Minqi Cai, Kang Wang, Dafu Chen, Rui Guo, Zheguang Lin, Qingsheng Niu and Ting Ji
    Citation: BMC Genomics 2023 24:100
    Content type: Research Published on:

  3. In Amomum tsaoko breeding, the low germination rate is the major limitation for their large-scale reproduction. We found that warm stratification was an effective treatment to break the seed dormancy of A. tsaoko

    Authors: Chunliu Pan, Lixiang Yao, Liying Yu, Zhu Qiao, Meiqiong Tang, Fan Wei, Xueyan Huang and Yunyi Zhou
    Citation: BMC Genomics 2023 24:99
    Content type: Research Published on:

  4. Serum biochemical indicators are often regarded as direct reflections of animal metabolism and health. The molecular mechanisms underlying serum biochemical indicators metabolism of chicken (Gallus Gallus) hav...

    Authors: Haijie Song, Wenting Li, Yuanfang Li, Bin Zhai, Yujie Guo, Yi Chen, Ruili Han, Guirong Sun, Ruirui Jiang, Zhuanjian Li, Fengbin Yan, Guoxi Li, Xiaojun Liu, Yanhua Zhang, Yadong Tian and Xiangtao Kang
    Citation: BMC Genomics 2023 24:98
    Content type: Research Published on:

  5. ‘Long read’ sequencing methods have been used to identify previously uncharacterized structural variants that cause human genetic diseases. Therefore, we investigated whether long read sequencing could facilitate...

    Authors: Ahmed Arslan, Zhuoqing Fang, Meiyue Wang, Yalun Tan, Zhuanfen Cheng, Xinyu Chen, Yuan Guan, Laura J. Pisani, Boyoung Yoo, Gill Bejerano and Gary Peltz
    Citation: BMC Genomics 2023 24:97
    Content type: Research article Published on:

  6. Serum microRNAs (miRNAs) are promising non-invasive biomarkers for diagnosing glioma. However, most reported predictive models are constructed without a large enough sample size, and quantitative expression le...

    Authors: Hongdong Li, Liyuan Ma, Fengyuan Luo, Wenkai Liu, Na Li, Tao Hu, Haijian Zhong, You Guo and Guini Hong
    Citation: BMC Genomics 2023 24:96
    Content type: Research Published on:

  7. Acanthocephala is a clade of obligate endoparasites whose mitochondrial genomes (mitogenomes) and evolution remain relatively poorly understood. Previous studies reported that atp8 is lacking from acanthocephalan...

    Authors: Jin-Wei Gao, Xi-Ping Yuan, Ivan Jakovlić, Hao Wu, Chuan-Yu Xiang, Min Xie, Rui Song, Zhong-Gui Xie, Yuan-An Wu and Dong-Sheng Ou
    Citation: BMC Genomics 2023 24:95
    Content type: Research Published on:

  8. Dung beetles recycle organic matter through the decomposition of feces and support ecological balance. However, these insects are threatened by the indiscriminate use of agrochemicals and habitat destruction. Cop...

    Authors: Hee Ju Hwang, Bharat Bhusan Patnaik, Snigdha Baliarsingh, Hongray Howrelia Patnaik, Min Kyu Sang, Jie eun Park, Hang Chul Cho, Dae Kwon Song, Jun Yang Jeong, Chan Eui Hong, Yong Tae Kim, Hyeon Jun Sin, Liu Ziwei, So Young Park, Se Won Kang, Heon Cheon Jeong…
    Citation: BMC Genomics 2023 24:94
    Content type: Research Published on:

  9. The quorum-sensing molecule farnesol, in opportunistic yeast Candida albicans, modulates its dimorphic switch between yeast and hyphal forms, and biofilm formation. Although there is an increasing interest in far...

    Authors: Sima Mohammadi, Annie Leduc, Steve J. Charette, Jean Barbeau and Antony T. Vincent
    Citation: BMC Genomics 2023 24:93
    Content type: Research Published on:

  10. Non-alcoholic fatty liver disease (NAFLD) is one of most common diseases in the world. Recently, alternative splicing (AS) has been reported to play a key role in NAFLD processes in mammals. Ducks can quickly ...

    Authors: Yiming Wang, Linfei Song, Mengfei Ning, Jiaxiang Hu, Han Cai, Weitao Song, Daoqing Gong, Long Liu, Jacqueline Smith, Huifang Li and Yinhua Huang
    Citation: BMC Genomics 2023 24:92
    Content type: Research Published on:

  11. The high similarity in anatomical and neurophysiological processes between pigs and humans make pigs an excellent model for metabolic diseases and neurological disorders. Lipids are essential for brain structu...

    Authors: Bruna Pereira da Silva, Simara Larissa Fanalli, Julia Dezen Gomes, Vivian Vezzoni de Almeida, Heidge Fukumasu, Felipe André Oliveira Freitas, Gabriel Costa Monteiro Moreira, Bárbara Silva-Vignato, James Mark Reecy, James Eugene Koltes, Dawn Koltes, Júlio Cesar de Carvalho Balieiro, Severino Matias de Alencar, Julia Pereira Martins da Silva, Luiz Lehmann Coutinho, Juliana Afonso…
    Citation: BMC Genomics 2023 24:91
    Content type: Research Published on:

  12. Aconitum transsectum Diels. (Ranunculaceae) is an important medicinal plant that is widely used in traditional Chinese medicine, but its morphological traits make it difficult to recognize from other Aconitum spe...

    Authors: Niu Yanfei, Su Tai, Wu Chunhua, Deng Jia and Yang Fazhong
    Citation: BMC Genomics 2023 24:90
    Content type: Research Published on:

  13. Near 70% of hepatocellular carcinoma (HCC) recurrence is early recurrence within 2-year post surgery. Long non-coding RNAs (lncRNAs) are intensively involved in HCC progression and serve as biomarkers for HCC ...

    Authors: Yi Fu, Anfeng Si, Xindong Wei, Xinjie Lin, Yujie Ma, Huimin Qiu, Zhinan Guo, Yong Pan, Yiru Zhang, Xiaoni Kong, Shibo Li, Yanjun Shi and Hailong Wu
    Citation: BMC Genomics 2023 24:89
    Content type: Research Published on:

  15. Facility cultivation is widely applied to meet the increasing demand for high yield and quality, with light intensity and light quality being major limiting factors. However, how changes in the light environme...

    Authors: Penghui Ai, Jundong Xue, Yifei Zhu, Wenchao Tan, Yifei Wu, Ying Wang, Zhongai Li, Zhongya Shi, Dongru Kang, Haoyi Zhang, Liwen Jiang and Zicheng Wang
    Citation: BMC Genomics 2023 24:87
    Content type: Research Published on:

  16. Prenatal stress (PS) is considered as a risk factor for many mental disorders. PS-induced transcriptomic alterations may contribute to the functional dysregulation during brain development. Here, we used RNA-s...

    Authors: Yuhao Dong, Jie Weng, Yueyan Zhu, Daijing Sun, Wei He, Qi Chen, Jin Cheng, Ying Zhu and Yan Jiang
    Citation: BMC Genomics 2023 24:86
    Content type: Research Published on:

  17. Paenibacillus polymyxa WLY78 is a Gram-positive, endospore-forming and N2-fixing bacterium. Our previous study has demonstrated that GlnR acts as both an activator and a repressor to regulate the transcription of...

    Authors: Tianshu Wang, Xiyun Zhao, Xinyuan Wu and Sanfeng Chen
    Citation: BMC Genomics 2023 24:85
    Content type: Research Published on:

  18. Methyl-binding domain (MBD) is a class of methyl-CpG-binding domain proteins that affects the regulation of gene expression through epigenetic modifications. MBD genes are not only inseparable from DNA methylatio...

    Authors: Shuo Wang, Jing Dong, Xue-Lei Zhao, Xin Song, Yue-Hong Long and Zhao-Bin Xing
    Citation: BMC Genomics 2023 24:84
    Content type: Research Published on:

  19. Global wheat productivity is seriously challenged by a range of rust pathogens, especially leaf rust derived from Puccinia triticina. Since the most efficient approach to control leaf rust is genetic resistance, ...

    Authors: Saba Delfan, Mohammad Reza Bihamta, Seyed Taha Dadrezaei, Alireza Abbasi and Hadi Alipour
    Citation: BMC Genomics 2023 24:83
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2023 24:263

  20. Tropical water lily is an aquatic plant with high ornamental value, but it cannot overwinter naturally at high latitudes. The temperature drop has become a key factor restricting the development and promotion ...

    Authors: Xiangyu Ma, Qijiang Jin, Yanjie Wang, Xiaowen Wang, Xuelian Wang, Meihua Yang, Chunxiu Ye, Zhijuan Yang and Yingchun XU
    Citation: BMC Genomics 2023 24:82
    Content type: Research Published on:

  21. Trichosanthes kirilowii Maxim. (TK) is a dioecious plant in the Cucurbitaceae family of which different sexes have separate medicinal uses. We used Illumina high-throughput sequencing technology to sequence miRN...

    Authors: Xiu-qin Hu, Han Song, Na Li, Chun-xiang Hao, Bo Zhang, Xin-peng Li, Jie Xin and Yong-qing Zhang
    Citation: BMC Genomics 2023 24:81
    Content type: Research Published on:

  22. Ribonuclease (RNase T2) plays crucial roles in plant evolution and breeding. However, there have been few studies on the RNase T2 gene family in Ziziphus jujuba Mill., one of important dried fruit tree species. R...

    Authors: Zhi Luo, Yu Zhang, Chunjiao Tian, Lihu Wang, Xuan Zhao, Zhiguo Liu, Lili Wang, Lixin Wang, Jin Zhao, Jiurui Wang and Mengjun Liu
    Citation: BMC Genomics 2023 24:80
    Content type: Research Published on:

  23. B-box (BBX) zinc-finger transcription factors play crucial roles in plant growth, development, and abiotic stress responses. Nevertheless, little information is available on sugarcane (Saccharum spp.) BBX genes a...

    Authors: Zilin Wu, Danwen Fu, Xiaoning Gao, Qiaoying Zeng, Xinglong Chen, Jiayun Wu and Nannan Zhang
    Citation: BMC Genomics 2023 24:79
    Content type: Research Published on:

  27. Exfoliation syndrome (XFS) is an age-related systemic disorder characterized by excessive production and progressive accumulation of abnormal extracellular material, with pathognomonic ocular manifestations. I...

    Authors: Jibril B. Hirbo, Francesca Pasutto, Eric R. Gamazon, Patrick Evans, Priyanka Pawar, Daniel Berner, Julia Sealock, Ran Tao, Peter S. Straub, Anuar I. Konkashbaev, Max A. Breyer, Ursula Schlötzer-Schrehardt, André Reis, Milam A. Brantley Jr, Chiea C. Khor, Karen M. Joos…
    Citation: BMC Genomics 2023 24:75
    Content type: Research article Published on:

  28. Gastrointestinal (GIT) helminthiasis is a global problem that affects livestock health, especially in small ruminants. One of the major helminth parasites of sheep and goats, Teladorsagia circumcincta, infects th...

    Authors: Shamshad Ul Hassan, Eng Guan Chua, Erwin A. Paz, Chin Yen Tay, Johan C. Greeff, Dieter G. Palmer, Olga Dudchenko, Erez Lieberman Aiden, Graeme B. Martin and Parwinder Kaur
    Citation: BMC Genomics 2023 24:74
    Content type: Research Published on:

  29. A considerable fraction of microRNAs (miRNAs) are highly conserved, and certain miRNAs correspond to genomic clusters. The clustering of miRNAs can be advantageous, possibly by allowing coordinated expression....

    Authors: Huiqin Niu, Yifan Pang, Lingli Xie, Qiaozhen Yu, Yubang Shen, Jiale Li and Xiaoyan Xu
    Citation: BMC Genomics 2023 24:73
    Content type: Research Published on:

  30. Vestimentifera (Polychaeta, Siboglinidae) is a taxon of deep-sea worm-like animals living in deep-sea hydrothermal vents, cold seeps, and organic falls. The morphology and lifespan of Ridgeia piscesae, which is t...

    Authors: Muhua Wang, Lingwei Ruan, Meng Liu, Zixuan Liu, Jian He, Long Zhang, Yuanyuan Wang, Hong Shi, Mingliang Chen, Feng Yang, Runying Zeng, Jianguo He, Changjun Guo and Jianming Chen
    Citation: BMC Genomics 2023 24:72
    Content type: Research Published on:

  32. MicroRNAs (miRNAs) are endogenous small non-coding RNAs (21–25 nucleotides) that act as essential components of several biological processes. Golden-back crucian carp (GBCrC, Carassius auratus) is a naturally mut...

    Authors: Xianbo Zhang, Mingkun Luo, Bingjie Jiang, Wenbin Zhu, Qianwen Min, Jinli Hu, Ting Liu, Jianjun Fu, Xiulan Shi, Pan Wang, Lanmei Wang and Zaijie Dong
    Citation: BMC Genomics 2023 24:70
    Content type: Research Published on:

  33. Bacillus Calmette–Guérin (BCG) remains the only vaccine to prevent tuberculosis (TB) during childhood, with relatively low to no efficacy against pulmonary TB in adolescents and adults. BCG consists of close t...

    Authors: Giuseppe D’Auria, Yordan Hodzhev, Michel de Jesús Aceves-Sánchez, Andrés Moya, Stefan Panaiotov and Mario Alberto Flores-Valdez
    Citation: BMC Genomics 2023 24:69
    Content type: Research Published on:

  34. The early craniofacial development is a highly coordinated process involving neural crest cell migration, proliferation, epithelial apoptosis, and epithelial-mesenchymal transition (EMT). Both genetic defects ...

    Authors: Yaohui Liang, Chao Song, Jieli Li, Ting Li, Chunlei Zhang and Yi Zou
    Citation: BMC Genomics 2023 24:68
    Content type: Research article Published on:

  35. Ischemic stroke (IS) is a serious neurological disease that largely results in long-term disability and death. Extensive evidence has indicated that the activation of inflammation and ferroptosis significantly...

    Authors: Jian-Min Chen, Xiao-Lu Li, Yang Ye, Sen-Ming Xu, Qing-Fa Chen and Jian-Wen Xu
    Citation: BMC Genomics 2023 24:67
    Content type: Research Published on:

  36. Karyotype abnormalities are frequent in immortalized continuous cell lines either transformed or derived from primary tumors. Chromosomal rearrangements can cause dramatic changes in gene expression and affect...

    Authors: A. Maslova, V. Plotnikov, M. Nuriddinov, M. Gridina, V. Fishman and A. Krasikova
    Citation: BMC Genomics 2023 24:66
    Content type: Research Published on:

  37. Citrus yellow vein clearing virus (CYVCV) is the causative agent of citrus yellow vein clearing disease, and poses a serious threat to the lemon industry in Asia. The common symptoms of CYVCV-infected lemon plant...

    Authors: Yu Bin, Qi Zhang, Yue Su, Chunqing Wang, Qiqi Jiang, Zhen Song and Changyong Zhou
    Citation: BMC Genomics 2023 24:65
    Content type: Research Published on:

  38. C4 photosynthesis is a mechanism that plants have evolved to reduce the rate of photorespiration during the carbon fixation process. The C4 pathway allows plants to adapt to high temperatures and light while more...

    Authors: Santiago Prochetto, Anthony J. Studer and Renata Reinheimer
    Citation: BMC Genomics 2023 24:64
    Content type: Research Published on:

  40. The snub-nosed monkey (Rhinopithecus roxellanae) is an endangered animal species mainly distributed in China and needs to be protected. Gut microbiome is an important determinant of animal health and population s...

    Authors: Gang Zhao, Mingpu Qi, Qiankun Wang, Changmin Hu, Xiang Li, Yingyu Chen, Jingyuan Yang, Huiliang Yu, Huanchun Chen and Aizhen Guo
    Citation: BMC Genomics 2023 24:62
    Content type: Research Published on:

  41. Lettuce (Lactuca sativa L.) cultivated in facilities display low vitamin C (L-ascorbic acid (AsA)) contents which require augmentation. Although UV-B irradiation increases the accumulation of AsA in crops, proces...

    Authors: Hua Zhou, Lei Yu, Shujuan Liu, Anfan Zhu, Yanfang Yang, Caihui Chen, Aihong Yang, Lipan Liu and Faxin Yu
    Citation: BMC Genomics 2023 24:61
    Content type: Research Published on:

  43. Starch are the main nutritional components of maize (Zea mays L.), and starch pasting properties are widely used as essential indicators for quality estimation. Based on the previous studies, various genes relate...

    Authors: Xinmei Guo, Zhaopeng Ge, Ming Wang, Meiai Zhao, Yuhe Pei and Xiyun Song
    Citation: BMC Genomics 2023 24:59
    Content type: Research Published on:

  44. Toona is a critical genus in the Meliaceae, and the plants of this group are an asset for both restorative and restorative purposes, the most flexible of which are Toona sinensis and Toona ciliata. To concentrate...

    Authors: Youli Li, Min Gu, Xuanzhe Liu, Jianna Lin, Huier Jiang, Huiyun Song, Xingcui Xiao and Wei Zhou
    Citation: BMC Genomics 2023 24:58
    Content type: Research Published on:

  45. To explore the causes of sudden unexpected death (SUD) and to search for high-risk people, whole exome sequencing (WES) was performed in families with SUDs. 

    Authors: Si-Jie Wei, Jin-Liang Du, Yue-Bing Wang, Peng-Fei Qu, Lin Ma, Zhong-Chun Sun, Xue Tang, Kai Liu, Yan-Mei Xi, Sheng-Jie Nie, Peng-Lin Jia, Wu Long, Yong-Qiang Qu, Yu-Hua Li and Pu-Ping Lei
    Citation: BMC Genomics 2023 24:57
    Content type: Research Published on:

  46. Toxicodendron vernicifluum, belonging to the family Anacardiaceae, is an important commercial arbor species, which can provide us with the raw lacquer, an excellent adhesive and painting material used to make lac...

    Authors: Dan Zong, Zhensheng Qiao, Jintao Zhou, Peiling Li, Peihua Gan, Meirong Ren and Chengzhong He
    Citation: BMC Genomics 2023 24:56
    Content type: Research Published on:

  47. Tripsacum dactyloides (2n = 4x = 72) and Zea perennis (2n = 4x = 40) are tertiary gene pools of Zea mays L. and exhibit many abiotic adaptations absent in modern maize, especially salt tolerance. A previously rep...

    Authors: Xiaofeng Li, Xingyu Wang, Qiangqiang Ma, Yunfeng Zhong, Yibo Zhang, Ping Zhang, Yingzheng Li, Ruyu He, Yang Zhou, Yang Li, Mingjun Cheng, Xu Yan, Yan Li, Jianmei He, Muhammad Zafar Iqbal, Tingzhao Rong…
    Citation: BMC Genomics 2023 24:55
    Content type: Research Published on:

  48. Melophagus ovinus is considered to be of great veterinary health significance. However, little is known about the information on genetic mechanisms of the specific biological characteristics and novel methods for...

    Authors: Qingxun Zhang, Qingsong Zhou, Shuyi Han, Ying Li, Ye Wang and Hongxuan He
    Citation: BMC Genomics 2023 24:54
    Content type: Research Published on:

  49. Arbuscular mycorrhizal (AM) fungi are arguably the most important symbionts of plants, offering a range of benefits to their hosts. However, the provisioning of these benefits does not appear to be uniform amo...

    Authors: Jelle van Creij, Ben Auxier, Jianyong An, Raúl Y. Wijfjes, Claudia Bergin, Anna Rosling, Ton Bisseling, Zhiyong Pan and Erik Limpens
    Citation: BMC Genomics 2023 24:53
    Content type: Research article Published on:

  50. The circadian clock integrates endogenous and exogenous signals and regulates various physiological processes in plants. REVEILLE (RVE) proteins play critical roles in circadian clock system, especially CCA1 (...

    Authors: Zhe Liu, Xiaoxuan Zhu, Weijuan Liu, Kaijie Qi, Zhihua Xie, Shaoling Zhang, Juyou Wu and Peng Wang
    Citation: BMC Genomics 2023 24:49
    Content type: Research Published on:

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BMC Genomics

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