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  1. Mitochondrial genome abnormalities can lead to mitochondrial dysfunction, which in turn affects cellular biology and is closely associated with the development of various diseases. The demand for mitochondrial...

    Authors: Zehui Feng, Fan Peng, Fanfan Xie, Yang Liu, Huanqin Zhang, Jing Ma, Jinliang Xing and Xu Guo
    Citation: BMC Genomics 2024 25:41
  2. Viral diseases are posing threat to annual production and quality of tobacco in China. Recently, tomato spotted wilt orthotospovirus (TSWV) has been reported to infect three major crops including tobacco. Curr...

    Authors: Ali Kamran, Ying Li, Wanhong Zhang, Yubin Jiao, Tahir Farooq, Yong Wang, Dongyang Liu, Lianqiang Jiang, Lili Shen, Fenglong Wang and Jinguang Yang
    Citation: BMC Genomics 2024 25:40
  3. Scutellaria baicalensis Georgi has been extensively used as a medicinal herb in China for over 2000 years. They may be intentionally or inadvertently substituted or blended with comparable species in the local ma...

    Authors: Zhen Li, Baozhong Duan, Zhongyu Zhou, Hui Fang, Meihua Yang, Conglong Xia, Ying Zhou and Jing Wang
    Citation: BMC Genomics 2024 25:39
  4. Citrus is one of the most valuable fruits worldwide and an economic pillar industry in southern China. Nevertheless, it frequently suffers from undesirable environmental stresses during the growth cycle, which...

    Authors: Ming-Kang Fu, Ying-Na He, Xiao-Yue Yang, Xi Tang, Min Wang and Wen-Shan Dai
    Citation: BMC Genomics 2024 25:37
  5. Hollow heart is a kind of physiological defect that seriously affects the yield, quality, and economic value of cucumber. However, the formation of hollow hearts may relate to multiple factors in cucumber, and...

    Authors: Jiaxi Li, Chenran Gu, Yanwen Yuan, Zeyuan Gao, Zhiwei Qin and Ming Xin
    Citation: BMC Genomics 2024 25:36
  6. Macrobrachium nipponense is a freshwater prawn of economic importance in China. Its reproductive molt is crucial for seedling rearing and directly impacts the industry’s economic efficiency. 20-hydroxyecdysone (2...

    Authors: Huwei Yuan, Pengfei Cai, Wenyi Zhang, Shubo Jin, Sufei Jiang, Yiwei Xiong, Yongsheng Gong, Hui Qiao and Hongtuo Fu
    Citation: BMC Genomics 2024 25:35
  7. Bats are renowned for harboring a high viral diversity, their characteristics contribute to emerging infectious diseases. However, environmental and anthropic factors also play a significant role in the emerge...

    Authors: Nádia K. Albuquerque, Sandro P. Silva, Carine F. Aragão, Tânia Cristina A. S. Cunha, Francisco A. S. Paiva, Taciana F. S. B. Coelho and Ana Cecília R. Cruz
    Citation: BMC Genomics 2024 25:34
  8. The sexual maturity of chickens is an important economic trait, and the breeding of precocious and delayed puberty roosters is an important selection strategy for broilers. The comb serves as an important seco...

    Authors: Hao Qi, Zhidan Deng, Fei Ye, Junwei Gou, Miaoxin Huang, Hai Xiang and Hua Li
    Citation: BMC Genomics 2024 25:33
  9. γ-glutamylcyclotransferase (GGCT), an enzyme to maintain glutathione homeostasis, plays a vital role in the response to plant growth and development as well as the adaptation to various stresses. Although the GGC...

    Authors: Long Zhang, Wanting Sun, Weidong Gao, Yanyan Zhang, Peipei Zhang, Yuan Liu, Tao Chen and Delong Yang
    Citation: BMC Genomics 2024 25:32
  10. Shaziling pig is a well-known indigenous breed in China who has superior meat quality traits. However, the genetic mechanism and genomic evidence underlying meat quality characteristics of Shaziling pigs are s...

    Authors: Shuaihan He, Yubei Wang, Yabiao Luo, Mingming Xue, Maisheng Wu, Hong Tan, Yinglin Peng, Kejun Wang and Meiying Fang
    Citation: BMC Genomics 2024 25:30
  11. Orychophragmus violaceus is a potentially important industrial oilseed crop due to the two 24-carbon dihydroxy fatty acids (diOH-FA) that was newly identified from its seed oil via a ‘discontinuous elongation’ pr...

    Authors: Changfu Jia, Qiang Lai, Yiman Zhu, Jiajun Feng, Xuming Dan, Yulin Zhang, Zhiqin Long, Jiali Wu, Zeng Wang, Xiner Qumu, Rui Wang and Jing Wang
    Citation: BMC Genomics 2024 25:29
  12. Enterococcus faecium and E. lactis are phylogenetically closely related lactic acid bacteria that are ubiquitous in nature and are known to be beneficial or pathogenic. Despite their considerable industrial and c...

    Authors: Dae Gyu Choi, Ju Hye Baek, Dong Min Han, Shehzad Abid Khan and Che Ok Jeon
    Citation: BMC Genomics 2024 25:28
  13. Databases of genome sequences are growing exponentially, but, in some cases, assembly is incomplete and genes are poorly annotated. For evolutionary studies, it is important to identify all members of a given ...

    Authors: Anton Frisgaard Nørrevang, Sergey Shabala and Michael Palmgren
    Citation: BMC Genomics 2024 25:26
  14. Transforming growth factor β (TGF-β) superfamily genes can regulate various processes, especially in embryogenesis, adult development, and homeostasis. To understand the evolution and divergence patterns of th...

    Authors: Qian Zhang, Jianming Chen, Wei Wang, Jingyu Lin and Jiabao Guo
    Citation: BMC Genomics 2024 25:24
  15. Jianli pig, a renowned indigenous breed in China, has the characteristics of a two-end black (TEB) coat color, excellent meat quality, strong adaptability and increased prolificacy. However, there is limited i...

    Authors: Zhong Xu, Junjing Wu, Yu Zhang, Mu Qiao, Jiawei Zhou, Yue Feng, Zipeng Li, Hua Sun, Ruiyi Lin, Zhongxu Song, Haizhong Zhao, Lianghua Li, Nanqi Chen, Yujie Li, Favour Oluwapelumi Oyelami, Xianwen Peng…
    Citation: BMC Genomics 2024 25:23
  16. Gelsemium elegans is a traditional Chinese medicinal plant and temperature is one of the key factors affecting its growth. RAV (related to ABI3/VP1) transcription factor plays multiple roles in higher plants, inc...

    Authors: Tianzhen Cui, Shoujian Zang, Xinlu Sun, Jing Zhang, Yachun Su, Dongjiao Wang, Guran Wu, Ruiqi Chen, Youxiong Que, Qing Lin and Chuihuai You
    Citation: BMC Genomics 2024 25:22
  17. The order Lepidoptera has an abundance of species, including both agriculturally beneficial and detrimental insects. Molecular data has been used to investigate the phylogenetic relationships of major subdivis...

    Authors: Abdelhameed Elameen, Simo N. Maduna, Melissa H. Mageroy, André van Eerde, Geir Knudsen, Snorre B. Hagen and Hans Geir Eiken
    Citation: BMC Genomics 2024 25:21
  18. Glycoside hydrolase family 1 (GH1) β-glucosidases (BGLUs), are encoded by a large number of genes, which participate in the development and stress response of plants, particularly under biotic and abiotic stre...

    Authors: Haiming Kong, Jiaxing Song, Shihai Ma, Jing Yang, Zitong Shao, Qian Li, Zhongxing Li, Zhiguo Xie, Peizhi Yang and Yuman Cao
    Citation: BMC Genomics 2024 25:20
  19. Eukaryotic messenger RNAs (mRNAs) are often modified with methyl groups at the N6 position of adenosine (m6A), and these changes are interpreted by YTH domain-containing proteins to regulate the metabolism of ...

    Authors: Shugao Fan, Xiao Xu, Jianmin Chen, Yanling Yin and Ying Zhao
    Citation: BMC Genomics 2024 25:18
  20. Specific pathogen-free ducks are a valuable laboratory resource for waterfowl disease research and poultry vaccine development. High throughput sequencing allows the systematic identification of structural var...

    Authors: Lanlan Li, Jinqiang Quan, Hongyi Liu, Haibo Yu, Hongyan Chen, Changyou Xia, Shengguo Zhao and Caixia Gao
    Citation: BMC Genomics 2024 25:17
  21. The Rhus gall aphid, Schlechtendalia chinensis, feeds on its primary host plant Rhus chinensis to induce galls, which have economic importance in medicines and the food industry. Rhus gall aphids have a unique li...

    Authors: Aftab Ahmad, Carol von Dohlen and Zhumei Ren
    Citation: BMC Genomics 2024 25:16
  22. The sacred datura plant (Solanales: Solanaceae: Datura wrightii) has been used to study plant–herbivore interactions for decades. The wealth of information that has resulted leads it to have potential as a model ...

    Authors: Jay K. Goldberg, Aaron Olcerst, Michael McKibben, J. Daniel Hare, Michael S. Barker and Judith L. Bronstein
    Citation: BMC Genomics 2024 25:15
  23. Mapping expression quantitative trait loci (eQTLs) in skeletal muscle tissue in pigs is crucial for understanding the relationship between genetic variation and phenotypic expression of carcass traits in meat ...

    Authors: Felipe André Oliveira Freitas, Luiz F. Brito, Simara Larissa Fanalli, Janaína Lustosa Gonçales, Bruna Pereira Martins da Silva, Mariah Castro Durval, Fernanda Nery Ciconello, Camila Sabino de Oliveira, Lucas Echevarria Nascimento, Izally Carvalho Gervásio, Julia Dezen Gomes, Gabriel Costa Monteiro Moreira, Bárbara Silva-Vignato, Luiz Lehmann Coutinho, Vivian Vezzoni de Almeida and Aline Silva Mello Cesar
    Citation: BMC Genomics 2024 25:14
  24. Alcohol dehydrogenases (ADHs) are the crucial enzymes that can convert ethanol into acetaldehyde. In tobacco, members of ADH gene family are involved in various stresses tolerance reactions, lipid metabolism a...

    Authors: Ruiqi Wang, Chaofan Du, Gang Gu, Binghui Zhang, Xiaolu Lin, Chengliang Chen, Tong Li, Rui Chen and Xiaofang Xie
    Citation: BMC Genomics 2024 25:13
  25. GRAS is a family of plant-specific transcription factors (TFs) that play a vital role in plant growth and development and response to adversity stress. However, systematic studies of the GRAS TF family in kiwi...

    Authors: Ling Zhu, Tuo Yin, Mengjie Zhang, Xiuyao Yang, Jiexin Wu, Hanbing Cai, Na Yang, Xulin Li, Ke Wen, Daming Chen, Hanyao Zhang and Xiaozhen Liu
    Citation: BMC Genomics 2024 25:12
  26. Genomic dissection of genetic effects on desirable traits and the subsequent use of genomic selection hold great promise for accelerating the rate of genetic improvement of forest tree species. In this study, ...

    Authors: Leiming Dong, Yunhui Xie, Yalin Zhang, Ruizhen Wang and Xiaomei Sun
    Citation: BMC Genomics 2024 25:11
  27. Plant U-box (PUB) E3 ubiquitin ligases have vital effects on various biological processes. Therefore, a comprehensive and systematic identification of the members of the U-box gene family in potato will help t...

    Authors: Zhen Liu, Lei Wang, Yuanming Li, Jinyong Zhu, Zhitao Li, Limin Chen, Hongyang Li, Tianbin Shi, Panfeng Yao, Zhenzhen Bi, Chao Sun, Jiangping Bai, Junlian Zhang and Yuhui Liu
    Citation: BMC Genomics 2024 25:10
  28. Planting tested forest reproductive material is crucial to ensure the increased resilience of intensively managed productive stands for timber and wood product markets under climate change scenarios. Single-st...

    Authors: Kedra M. Ousmael, Eduardo P. Cappa, Jon K. Hansen, Prasad Hendre and Ole K. Hansen
    Citation: BMC Genomics 2024 25:9
  29. Oxidative stress (OS) plays an essential role in chronic diseases such as colorectal cancer (CRC). In this study, we aimed to explore the relation between oxidative stress-related genes and CRC prognosis and t...

    Authors: Leilei Yang, Chengfeng Fang, Ruili Zhang and Shenkang Zhou
    Citation: BMC Genomics 2024 25:8
  30. Nitrogen use efficiency (NUE) is closely related to crop yield and nitrogen fertilizer application rate. Although NUE is susceptible to environments, quantitative trait nucleotides (QTNs) for NUE in wheat germ...

    Authors: Zaicheng Zhang, Chaojun Peng, Weigang Xu, Yan Li, Xueli Qi and Mingzhong Zhao
    Citation: BMC Genomics 2024 25:7
  31. Microsporidia are a large taxon of intracellular pathogens characterized by extraordinarily streamlined genomes with unusually high sequence divergence and many species-specific adaptations. These unique facto...

    Authors: Dennis Svedberg, Rahel R. Winiger, Alexandra Berg, Himanshu Sharma, Christian Tellgren-Roth, Bettina A. Debrunner-Vossbrinck, Charles R. Vossbrinck and Jonas Barandun
    Citation: BMC Genomics 2024 25:6
  32. Human endogenous retroviruses (HERVs) are the germline embedded proviral fragments of ancient retroviral infections that make up roughly 8% of the human genome. Our understanding of HERVs in physiology primari...

    Authors: Nicholas Dopkins, Bhavya Singh, Stephanie Michael, Panpan Zhang, Jez L. Marston, Tongyi Fei, Manvendra Singh, Cedric Feschotte, Nicholas Collins, Matthew L. Bendall and Douglas F. Nixon
    Citation: BMC Genomics 2024 25:5
  33. TCP proteins are plant specific transcription factors that play important roles in plant growth and development. Despite the known significance of these transcription factors in general plant development, thei...

    Authors: Chaoqun Chen, Yao Zhang, Yuanfei Chen, Hongxu Chen and Ronggao Gong
    Citation: BMC Genomics 2024 25:3
  34. The infection of carbapenem-resistant organisms was a huge threat to human health due to their global spread. Dealing with a carbapenem-resistant Serratia marcescens (CRSM) infection poses a significant challenge...

    Authors: Qian Xu, Beiwen Zheng, Kaixuan Li, Ping Shen and Yonghong Xiao
    Citation: BMC Genomics 2024 25:2
  35. There has been a significant surge in the global prevalence of diabetes mellitus (DM), which increases the susceptibility of individuals to ovarian cancer (OC). However, the relationship between DM and OC rema...

    Authors: Zhihao Zhao, Qilin Wang, Fang Zhao, Junnan Ma, Xue Sui, Hyok Chol Choe, Peng Chen, Xue Gao and Lin Zhang
    Citation: BMC Genomics 2024 25:1
  36. Increasing evidence has shown that the expression of circular RNAs (circRNAs) can affect the drug sensitivity of cells and significantly influence drug efficacy. Therefore, research into the relationships betw...

    Authors: Shanghui Lu, Yong Liang, Le Li, Shuilin Liao, Yongfu Zou, Chengjun Yang and Dong Ouyang
    Citation: BMC Genomics 2023 24:796
  37. GDSL esterase/lipases (GELPs) play important roles in plant growth, development, and response to biotic and abiotic stresses. Presently, an extensive and in-depth analysis of GELP family genes in cotton is still ...

    Authors: Lisheng Duan, Fei Wang, Haitao Shen, Shuangquan Xie, Xifeng Chen, Quanliang Xie, Rong Li, Aiping Cao and Hongbin Li
    Citation: BMC Genomics 2023 24:795
  38. Sepsis is a life-threatening syndrome resulting from immune system dysfunction that is caused by infection. It is of great importance to analyze the immune characteristics of sepsis, identify the key immune sy...

    Authors: Haiyan Xue, Ziyan Xiao, Xiujuan Zhao, Shu Li, Zhenzhou Wang, Jie Zhao and Fengxue Zhu
    Citation: BMC Genomics 2023 24:794
  39. Heat shock proteins (HSPs) function as molecular chaperones with critical roles in chicken embryogenesis, immune response to infectious diseases, and response to various environmental...

    Authors: Anh Duc Truong, Ha Thi Thanh Tran, Nhu Thi Chu, Huyen Thi Nguyen, Lanh Phan, Hoai Thi Phan, Thi Hao Vu, Ki-Duk Song, Hyun S. Lillehoj, Yeong Ho Hong and Hoang Vu Dang
    Citation: BMC Genomics 2023 24:793
  40. Changshun green-shell laying hens are unique to the Guizhou Province, China, and have high egg quality but relatively low yield. Egg production traits are regulated by the hypothalamus-pituitary-ovary axis. Ho...

    Authors: Wenbin Xu, Ren Mu, Tuya Gegen, Tiantian Ran, Qi Wu, Di Wen, Fen Wang and Zhi Chen
    Citation: BMC Genomics 2023 24:792
  41. Escherichia coli O157:H7 is a foodborne pathogen that has been linked to global disease outbreaks. These diseases include hemorrhagic colitis and hemolytic uremic syndrome. It is vital to know the features that ...

    Authors: Natalie Naidoo and Oliver T. Zishiri
    Citation: BMC Genomics 2023 24:791
  42. Transcriptome studies disentangle functional mechanisms of gene expression regulation and may elucidate the underlying biology of disease processes. However, the types of tissues currently collected typically ...

    Authors: Molly Martorella, Silva Kasela, Renee Garcia-Flores, Alper Gokden, Stephane E. Castel and Tuuli Lappalainen
    Citation: BMC Genomics 2023 24:790
  43. Social interactions affect physiological and pathological processes, yet their direct impact in peripheral tissues remains elusive. Recently we showed that disruption of pair bonds in monogamous Peromyscus califo...

    Authors: A. Naderi, K. Liles, T. Burns, B. Chavez, K-T. Huynh-Dam and H. Kiaris
    Citation: BMC Genomics 2023 24:789

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