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  1. Next-generation Sequencing (NGS) combined with bioinformatic analyses constitutes a powerful approach for identifying and characterizing previously unknown viral genomes. In this study, leaf samples from bitte...

    Authors: Shahrbanou Ghorani, Hossein Massumi, Samin H. Farhangi, Mehdi Mansouri, Jahangir Heydarnejad and Akbar Hosseinipour
    Citation: BMC Genomics 2024 25:181
  2. Gene expression pattern is associated with biological phenotype and is widely used in exploring gene functions. Its evolution is also crucial in understanding species speciation and divergence. The genus Gossy...

    Authors: Yuqing Wu, Rongnan Sun, Tong Huan, Yanyan Zhao, Dongliang Yu and Yuqiang Sun
    Citation: BMC Genomics 2024 25:179
  3. Acute Hepatopancreatic Necrosis Disease (AHPND) causes significant mortality in shrimp aquaculture. The infection is primarily instigated by Vibrio parahaemolyticus (Vp) strains carrying a plasmid encoding the bi...

    Authors: Marieke Vandeputte, Sieglinde Coppens, Peter Bossier, Nick Vereecke and Daisy Vanrompay
    Citation: BMC Genomics 2024 25:178
  4. Prion diseases, also known as transmissible spongiform encephalopathies (TSEs) remain one of the deleterious disorders, which have affected several animal species. Polymorphism of the prion protein (PRNP) gene ma...

    Authors: Adeniyi C. Adeola, Semiu F. Bello, Abdussamad M. Abdussamad, Rahamon A. M. Adedokun, Sunday C. Olaogun, Nasiru Abdullahi, Akanbi I. Mark, Anyebe B. Onoja, Oscar J. Sanke, Godwin F. Mangbon, Jebi Ibrahim, Philip M. Dawuda, Adebowale E. Salako, Samia Kdidi and Mohamed Habib Yahyaoui
    Citation: BMC Genomics 2024 25:177
  5. Xinjiang Mongolian cattle is an indigenous breed that inhabits the Taklimakan Desert and is characterized by its small body size. However, the genomic diversity, origin, and genetic basis underlying the adapta...

    Authors: Lei Xu, Kaiqing Zhou, Xixia Huang, Hong Chen, Hong Dong and Qiuming Chen
    Citation: BMC Genomics 2024 25:176
  6. Brain diseases pose a significant threat to human health, and various network-based methods have been proposed for identifying gene biomarkers associated with these diseases. However, the brain is a complex sy...

    Authors: Ping Zhang, Weihan Zhang, Weicheng Sun, Jinsheng Xu, Hua Hu, Lei Wang and Leon Wong
    Citation: BMC Genomics 2024 25:175
  7. Alfalfa, an essential forage crop known for its high yield, nutritional value, and strong adaptability, has been widely cultivated worldwide. The yield and quality of alfalfa are frequently jeopardized due to ...

    Authors: Jing Yang, Jiangnan Yi, Shihai Ma, Yafang Wang, Jiaxing Song, Shuo Li, Yueyan Feng, Haoyang Sun, Cai Gao, Rongchen Yang, Zhongxing Li, Yuman Cao and Peizhi Yang
    Citation: BMC Genomics 2024 25:174
  8. There is increasing interest in using intestinal organoids to study complex traits like feed efficiency (FE) and host-microbe interactions. The aim of this study was to investigate differences in the molecular...

    Authors: Ole Madsen, Roxann S.C. Rikkers, Jerry M. Wells, Rob Bergsma, Soumya K. Kar, Nico Taverne, Anja J. Taverne-Thiele, Esther D. Ellen and Henri Woelders
    Citation: BMC Genomics 2024 25:173
  9. The highly eusocial stingless bees are crucial pollinators of native and agricultural ecosystems. Nevertheless, genomic studies within this bee tribe remain scarce. We present the genome assembly of the stingl...

    Authors: Natalia de Souza Araujo, Fernando Ogihara, Pedro Mariano Martins and Maria Cristina Arias
    Citation: BMC Genomics 2024 25:171
  10. ATP-binding cassette (ABC) transporter proteins constitute a plant gene superfamily crucial for growth, development, and responses to environmental stresses. Despite their identification in various plants like...

    Authors: Xiaobing Kou, Zhen Zhao, Xinqi Xu, Chang Li, Juyou Wu and Shaoling Zhang
    Citation: BMC Genomics 2024 25:169
  11. Understanding the molecular underpinnings of phenotypic variations is critical for enhancing poultry breeding programs. The Brazilian broiler (TT) and laying hen (CC) lines exhibit striking differences in body...

    Authors: Renata Erbert Contriciani, Carla Vermeulen Carvalho Grade, Igor Buzzatto-Leite, Fernanda Cristina da Veiga, Mônica Corrêa Ledur, Antonio Reverter, Pamela Almeida Alexandre, Aline Silva Mello Cesar, Luiz Lehmann Coutinho and Lúcia Elvira Alvares
    Citation: BMC Genomics 2024 25:168
  12. The most widely practiced strategy for constructing the deep learning (DL) prediction model for drug resistance of Mycobacterium tuberculosis (MTB) involves the adoption of ready-made and state-of-the-art archite...

    Authors: Yu Wang, Zhonghua Jiang, Pengkuan Liang, Zhuochong Liu, Haoyang Cai and Qun Sun
    Citation: BMC Genomics 2024 25:167
  13. Sugarcane (Saccharum spp.) holds exceptional global significance as a vital crop, serving as a primary source of sucrose, bioenergy, and various by-products. The optimization of sugarcane breeding by fine-tuning ...

    Authors: Hongyan Ding, Xiaoxi Feng, Yuan Yuan, Baiyu Wang, Yuhao Wang and Jisen Zhang
    Citation: BMC Genomics 2024 25:165
  14. Guizhou black goat is one of the indigenous black goat breeds in the southwest region of Guizhou, China, which is an ordinary goat for mutton production. They are characterized by moderate body size, black coa...

    Authors: Lingle Chang, Yundi Zheng, Sheng Li, Xi Niu, Shihui Huang, Qingmeng Long, Xueqin Ran and Jiafu Wang
    Citation: BMC Genomics 2024 25:164
  15. Common wheat (Triticum aestivum L.) is a worldwide cereal crop, which is an integral part of the diets of many countries. In addition, the MYB gene of wheat plays a role in the response to salt stress.

    Authors: Yuanhang Mu, Luxi Shi, Huan Tian, Huaizhi Tian, Jv Zhang, Fusheng Zhao, Qingqin Zhang, Suqin Zhang and Guangdong Geng
    Citation: BMC Genomics 2024 25:163
  16. In this work, a novel isatin-Schiff base L2 had been synthesized through a simple reaction between isatin and 2-amino-5-methylthio-1,3,4-thiadiazole. The produced Schiff base L2 was then subjected to a hydroth...

    Authors: Heba E. Saad, Gaber M. Abu El-Reash, Mohamed gaber, Mohamed A. Hashem, Yasmeen G. Abou El-Reash, Nuha Y. Elamin, Mohamed R. Elamin and Yusif S. El-Sayed
    Citation: BMC Genomics 2024 25:162
  17. The Ovar-DRB1 gene, a crucial element of the Major Histocompatibility Complex (MHC) Class II region, initiates adaptive immunity by presenting antigens to T-cells. Genetic diversity in sheep, particularly in MHC ...

    Authors: Bashir Salim, Ryo Nakao, Elisha Chatanga, Olivia Marcuzzi, Muna Ahmed Eissawi, Faisal Almathen, Olivier Hanotte and Guillermo Giovambattista
    Citation: BMC Genomics 2024 25:160
  18. Myoblasts play an important role in muscle growth and repair, but the high glucose environment severely affects their function. The purpose of this study is to explore the potential molecular mechanism of lira...

    Authors: Dongmei Fan, Yunjie Zhang, Lanyu Lu, Fuzai Yin and Bowei Liu
    Citation: BMC Genomics 2024 25:159
  19. Studies have confirmed that Infectious bovine rhinotracheitis virus (IBRV) infection induces mitochondrial damage. MicroRNAs (miRNAs) are a class of noncoding RNA molecules, which are involved in various biolo...

    Authors: Yingcai Ma, Xueping Guo, Qin He, Lu Liu, Zelong Li, Xiaomin Zhao, Wenxi Gu, Qi Zhong, Na Li, Gang Yao and Xuelian Ma
    Citation: BMC Genomics 2024 25:158
  20. Passionfruit (Passiflora edulis) is a significant fruit crop in the commercial sector, owing to its high nutritional and medicinal value. The advent of high-throughput genomics sequencing technology has led to th...

    Authors: Chaowei Yu, Peng Wang, Shengjie Zhang, Jindian Liu, Yingyin Cheng, Songbai Zhang and Zujian Wu
    Citation: BMC Genomics 2024 25:157
  21. Campylobacter spp. is the most frequent cause of bacterial food-borne gastroenteritis and a high priority antibiotic resistant bacterium according to the World Health Organization (WHO). European monitoring of th...

    Authors: Michael Zarske, Huong Quynh Luu, Carlus Deneke, Marie-Theres Knüver, Maja Thieck, Ha Thi Thu Hoang, Nancy Bretschneider, Ngoc Thi Pham, Ingrid Huber and Kerstin Stingl
    Citation: BMC Genomics 2024 25:156
  22. DNA damage repair (DDR) may affect tumorigenesis and therapeutic response in hepatocellular carcinoma (HCC). Long noncoding RNAs (LncRNAs) can regulate DDR and play a vital role in maintaining genomic stabilit...

    Authors: Fei Huang, Chunyan Zhang, Wenjing Yang, Yan Zhou, Yihui Yang, Xinrong Yang, Wei Guo and Beili Wang
    Citation: BMC Genomics 2024 25:155
  23. Significant differences in immune responses, prevalence or susceptibility of diseases and treatment responses have been described between males and females. Despite this, sex-differentiation analysis of the ge...

    Authors: Collins K. Boahen, Hannah Abee, Isis Ricaño Ponce, Leo A. B. Joosten, Mihai G. Netea and Vinod Kumar
    Citation: BMC Genomics 2024 25:154
  24. The accurate prediction of genomic breeding values is central to genomic selection in both plant and animal breeding studies. Genomic prediction involves the use of thousands of molecular markers spanning the ...

    Authors: Vanda M. Lourenço, Joseph O. Ogutu, Rui A.P. Rodrigues, Alexandra Posekany and Hans-Peter Piepho
    Citation: BMC Genomics 2024 25:152
  25. The mediator complex subunits (MED) constitutes a multiprotein complex, with each subunit intricately involved in crucial aspects of plant growth, development, and responses to stress. Nevertheless, scant repo...

    Authors: Le Liang, Dong Wang, Dongmei Xu, Jiachang Xiao, Wen Tang, Xueping Song, Guofeng Yu, Zongxu Liang, Minghui Xie, Zeping Xu, Bo Sun, Yi Tang, Zhi Huang, Yunsong Lai and Huanxiu Li
    Citation: BMC Genomics 2024 25:149
  26. Captivity and artificial food provision are common conservation strategies for the endangered golden snub-nosed monkey (Rhinopithecus roxellana). Anthropogenic activities have been reported to impact the fitness ...

    Authors: Xuanzhen Liu, Jianqiu Yu, Zongjin Huan, Mei Xu, Ting Song, Ruilin Yang, Wei Zhu and Jianping Jiang
    Citation: BMC Genomics 2024 25:148
  27. Diachasmimorpha longicaudata is a hymenopteran fruit fly endoparasitoid. Females of this species find their hosts for oviposition by using complex sensorial mechanisms in response to physical and chemical stimuli...

    Authors: Juan P. Wulff, Lucila M. Traverso, Jose M. Latorre-Estivalis, Diego F. Segura and Silvia B. Lanzavecchia
    Citation: BMC Genomics 2024 25:147
  28. Environmental monitoring of bacterial pathogens is critical for disease control in coastal marine ecosystems to maintain animal welfare and ecosystem function and to prevent significant economic losses. This r...

    Authors: Neža Orel, Eduard Fadeev, Gerhard J. Herndl, Valentina Turk and Tinkara Tinta
    Citation: BMC Genomics 2024 25:146
  29. Schizothorax o’connori is an endemic fish distributed in the upper and lower reaches of the Yarlung Zangbo River in China. It has experienced a fourth round of whole gene replication events and is a good model fo...

    Authors: Kuo Gao, Zhi He, Jinxin Xiong, Qiqi Chen, Bolin Lai, Fei Liu, Ping Chen, Mingqiang Chen, Wenjie Luo, Junjie Huang, Wenxiang Ding, Haochen Wang, Yong Pu, Li Zheng, Yuanyuan Jiao, Mingwang Zhang…
    Citation: BMC Genomics 2024 25:145
  30. The cation/proton antiporter (CPA) superfamily plays a crucial role in regulating ion homeostasis and pH in plant cells, contributing to stress resistance. However, in potato (Solanum tuberosum L.), systematic id...

    Authors: Jintao Liu, Dianjue Li, Jing Wang, Qian Wang, Xiao Guo, Qi Fu, Philip Kear, Guangtao Zhu and Xiaohui Yang
    Citation: BMC Genomics 2024 25:144
  31. Whole-exome sequencing (WES) is widely used to diagnose complex genetic diseases and rare conditions. The implementation of a robust and effective quality control system for sample identification and tracking ...

    Authors: Yong Huang, Yuanyuan Xiao, Shengqiu Qu, Jiaming Xue, Lin Zhang, Li Wang and Weibo Liang
    Citation: BMC Genomics 2024 25:142
  32. Schizochytrium limacinum holds significant value utilized in the industrial-scale synthesis of natural DHA. Nitrogen-limited treatment can effectively increase the content of fatty acids and DHA, but there is cur...

    Authors: Duo Chen, Jing Chen, Rongchun Dai, Xuehai Zheng, Yuying Han, Youqiang Chen and Ting Xue
    Citation: BMC Genomics 2024 25:141
  33. Fish scales are typical products of biomineralization and play an important role in the adaptation of fish to their environment. The Gymnocypris przewalskii scales are highly specialized, with scales embedded in ...

    Authors: Baoke Xu, Yanrong Cui, Linlin A., Haichen Zhang, Qinghua Ma, Fulei Wei and Jian Liang
    Citation: BMC Genomics 2024 25:140
  34. CircRNAs are a class of noncoding RNAs with tissue- and development-specific expression characteristics. In many mammals, primordial follicle development begins in the embryonic stage. However, the study of ci...

    Authors: Xiangyan Wang, Yan Zhang, Jianjie Yu, Yabo Ma, Yaxiu Xu, Jiaqi Shi, Zhipeng Qi and Xinfeng Liu
    Citation: BMC Genomics 2024 25:139
  35. Spermatogonial stem cells (SSCs) are the foundation cells for continual spermatogenesis and germline regeneration in mammals. SSC activities reside in the undifferentiated spermatogonial population, and curren...

    Authors: Shuang Li, Rong-Ge Yan, Xue Gao, Zhen He, Shi-Xin Wu, Yu-Jun Wang, Yi-Wen Zhang, Hai-Ping Tao, Xiao-Na Zhang, Gong-Xue Jia and Qi-En Yang
    Citation: BMC Genomics 2024 25:138
  36. Microbial remediation of heavy metal polluted environment is ecofriendly and cost effective. Therefore, in the present study, Shewanella putrefaciens stain 4H was previously isolated by our group from the activat...

    Authors: Yajun Cai, Xu Chen, Hanghang Qi, Fantong Bu, Muhammad Shaaban and Qi-An Peng
    Citation: BMC Genomics 2024 25:136
  37. Pseudogenes have been implicated for their role in regulating cellular differentiation and organismal development. However, their role in promoting cancer-associated differentiation has not been well-studied. ...

    Authors: Govada Pravallika and Ramalingam Rajasekaran
    Citation: BMC Genomics 2024 25:135
  38. Cluster heatmaps are widely used in biology and other fields to uncover clustering patterns in data matrices. Most cluster heatmap packages provide utility functions to divide the dendrograms at a certain leve...

    Authors: Feiling Feng, Qiaonan Duan, Xiaoqing Jiang, Xiaoming Kao and Dadong Zhang
    Citation: BMC Genomics 2024 25:134
  39. WD40 proteins, which are highly prevalent in eukaryotes, play important roles in plant development and stress responses. However, systematic identification and exploration of WD40 proteins in tobacco have not ...

    Authors: Lijun Meng, Huan Su, Zechao Qu, Peng Lu, Jiemeng Tao, He Li, Jianfeng Zhang, Wei Zhang, Nan Liu, Peijian Cao and Jingjing Jin
    Citation: BMC Genomics 2024 25:133
  40. Circadian rhythm is crucial to the function of the immune system. Disorders of the circadian rhythm can contribute to inflammatory diseases such as Ulcerative colitis (UC). This Mendelian Randomization (MR) an...

    Authors: Mengfen Huang, Yuan Wu, Yiting Li, Xueru Chen, Jieni Feng, Zuming Li, Jiqiang Li, Jiankun Chen, Yue Lu and Yan Feng
    Citation: BMC Genomics 2024 25:130
  41. Lipid metabolism plays a pivotal role in asthma pathogenesis. However, a comprehensive analysis of the importance of lipid metabolism-related genes (LMRGs) in regulating the immune microenvironment in asthma r...

    Authors: Yuanmin Jia, Haixia Wang, Bin Ma, Zeyi Zhang, Jingjing Wang, Jin Wang and Ou Chen
    Citation: BMC Genomics 2024 25:129

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